Gasterosteus aculeatus (three-spined stickleback): 120811854
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Entry
120811854 CDS
T07457
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120811854 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120811854 (pan3)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120811854 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
120811854 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
120811854
NCBI-ProteinID:
XP_040023466
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All DBs
Position
XXI:complement(11661547..11673194)
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AA seq
825 aa
AA seq
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MNSGLPASAAPLGVAGIPNVKVKFCRYYAKDKTCFYGEECQFLHEDPSMSGLPLHGGGGS
PVPMSMAGGGGTPAVFSLGGSAAACPGGGGTGVSKKSEPLGPTGASLEGQLLSIPGMEGA
TLSDANLTNSYFSSSFIGVNGFGSPAETKYSMMQRMTTSSSSPSLNDCAKNFSRSTHDPV
NSPTSSLFSDFGALSISQRRKTPNPAASEFIPKGAPRMATMVQSTVQAFPSPLFPHPGLP
TSTAAALAPDSLSPILGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTSAAD
QGPHMIQKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMAD
ELRQELINRHLITMAQIDHSENTDVPSEVDSYHSLFPLEALPPPNRMQKTSNFSYITSCY
KAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVF
SYDFHAGAETMFGRHFSDPAADSYFTKRKWGELVYRRNEASITPDAHLQPSASNTWGQHE
PPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCVGV
FDVLTFDSSQTNHLALMPQYQQADLVSLGKVVLALACNSLAGIQRENLQKAMELVSINYS
SDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRLFR
LLAKLGTINERPEFQKDPSWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLNKL
DAGVPEKISLVSRDEKSVLVVTYSDLKRCFDSTFQELQAAASGSL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcctcagctgctccgcttggggttgccggaatacccaatgtc
aaggtgaagttttgccgatattacgcgaaagacaaaacctgcttttatggggaagagtgc
cagttcctccacgaggatccttccatgtcaggcttgccgctgcacggcggcggcggcagc
cccgtgccgatgtcgatggccggaggtggcgggactcccgcggtgttttctctcggcggc
tccgcggcggcctgcccgggcggcggggggaccggcgtgtccaagaaaagtgaaccattg
ggtcctacgggcgcatctctggaggggcagctgttatcaatcccagggatggagggtgca
actctgagcgatgccaatctcaccaactcttacttcagcagcagctttattggcgtcaat
gggtttggaagcccagctgagactaaatactcaatgatgcagcgaatgaccaccagcagc
agctctccaagtctcaacgactgtgccaagaacttcagccgcagcacacatgatccagtg
aactccccgacatcctcacttttcagtgattttggtgctcttagtatctcccaaaggaga
aagactcctaacccggcagcaagtgagttcatccctaagggagctccacgtatggccacg
atggttcagtccactgtccaggccttcccctcgcctctcttcccccatcctggcctcccc
acctccacggctgctgccctggctcctgactctctgtctccaattttaggtatgtctctt
tctgcgggatcttctcctctccactccccgaaaattacaccgcacacctcaccggctcca
cgtcggcgcagtcacaccccaaacccggccaactacatggtgcccacaagtgcagctgac
cagggacctcacatgatccagaaagaaaccgtaggggggaccacctacttctacacagac
aacaccccagcaccgatggccgggatggtgtttcctacgtaccatatctatccccccact
gcaccccatgtggcttacatgcagccaaaagccaacgctccgtccttcttcatggcagat
gaactccgacaggagttgataaacagacatctgataaccatggcccagattgaccactca
gagaacacagacgtaccctcggaggtggacagctaccacagcctcttcccgcttgaggcc
ctgcctccaccaaaccgcatgcagaagaccagcaacttcagctacatcacctcctgctac
aaggctgtcaacagcaaggatgaccttccttactgcctgaggaggatacacggtttccgc
ctcgtaaacaccaagtgtatgatgctggtggacatgtggaagaaaattcagcactcaaac
tctgtaacactgagggaggtcttcaccacaaaggcctttggagaccactcgttggtcttc
tcctatgactttcatgcgggtgcagaaaccatgttcggcagacacttcagtgatcctgcg
gcagattcgtacttcaccaagaggaagtggggtgagttggtctaccgtcgcaatgaagcc
agtatcaccccagatgcccatcttcagccatctgcttccaacacttggggacaacatgaa
cctccccccccacggcagcatgccggtttgctcccggagtctcttatctgggcctacatc
gtccagctcagctcggccctgcgcaccatccacactgccggcctggcctgccgcgtcatg
gaccccagcaagatcctcatcaccggcaagaccaggttacgggtgaactgtgtcggtgtg
tttgatgtcttgacctttgacagcagtcaaaccaatcatcttgccctaatgccacagtac
cagcaagcagacctcgtgtcgctgggcaaggtggtgctggcgttggcgtgcaactcattg
gctggtattcagagggagaacctgcagaaggccatggagctggtgtccatcaactactcc
tcagacctgaagaacctcattctgtatctgctgaccgaacaatctcgcctgcgcagcgtc
aacgacatcatgccgatgatcggagctcgattctacacacagctggatgcatcgcagatg
aggaacgatgtcattgaggaggatctggccaaggaggtgcaaaacggccgtctcttccgc
ctgttggccaaactgggcaccatcaacgagcggccagagttccagaaagacccgtcgtgg
tcggagacgggcgaccgctacctgttgaagctcttccgggatcacctgttccaccaggtg
acggaagccgggacgccctggatcgacctcagccacatcgtctcctgcctcaacaaactg
gacgctggcgttcccgagaagatcagcctggtgtcgcgggacgagaagagcgtcctggtc
gtgacctactcggacctgaagcgttgcttcgacagtaccttccaggagctgcaggccgca
gcctccggctctctgtag
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