Gasterosteus aculeatus (three-spined stickleback): 120811898
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Entry
120811898 CDS
T07457
Symbol
ddx28
Name
(RefSeq) probable ATP-dependent RNA helicase DDX28
KO
K20096
ATP-dependent RNA helicase DDX28 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gat03009
]
120811898 (ddx28)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120811898 (ddx28)
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
Other ribosome biogenesis factors
120811898 (ddx28)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
120811898
NCBI-ProteinID:
XP_040023575
UniProt:
A0AAQ4RM72
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Position
2:15443569..15447223
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AA seq
564 aa
AA seq
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MHSVKVGYFASAASRALCSGGIHCRDFIKVSACCPVHRSVSQKAASPEETVIRVPRYMQR
RVEHVKQARGQIKINTIKAGKLLIQSKNSDLNQSAGFTLGKFEPLILCSKGWKHNKSFGD
HFTINNIKAVAPFVAENQNEDVQQKAPVTFNNLRISNALVEALDHVNITHPTTVQLQTIP
KVMKGHNVLCAAETGSGKTLSYLLPIVHRLQAESEVDAESAHGIRAVVLVPSRELSEQVA
AVSRRLCAPLGLTTSIVGGGRGVGHIKSVFKRDHPDILVATPGALIKALRRRCVDLSELS
FFVVDEADTLFDPSFSDMLENILLSTNIARDPKETRGPGHKAQLLVVGATFPGGVGEVLS
KVTDLGSVVVIKSKMLHFLMPHVKQTFMKVKGTDKILELHQALKMLQQKEGGGAALVFCN
KSATVNWLGYSLEEMGMRHARLQGEMPAALRAGIFRTFQKAGQMDVLICTDIASRGLDTS
RVRLVVNYDSPESHTDYIHRAGRVGRAGGREDGEVLTFVTHPWDVELVQKIEMAARRRTS
LPGMESDIREPKPKPTEGEGEVEE
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcactctgtgaaggtcggctattttgcttcggctgcatcacgagctctctgctcaggt
ggaattcactgtcgggattttataaaagtgtccgcttgctgtcctgtgcatcgttctgtt
agtcagaaagccgcctcgccggaggagacggtcattcgtgtccctcgctacatgcagagg
cgcgttgaacacgtcaaacaggctcggggccaaatcaaaatcaacaccatcaaagctggc
aagctcttgatccagagcaaaaactctgatctgaaccaatctgcgggattcacactcggt
aagttcgagcctcttattctctgctctaaaggatggaagcacaacaaatctttcggtgac
cactttaccatcaacaacatcaaggcggtcgcgccctttgttgctgaaaatcagaatgaa
gacgtccagcagaaagcccccgtgacttttaataacctccgcatcagcaatgcgctggtg
gaagctttggaccatgtgaacattacccaccccaccactgtacagctgcagaccatccca
aaggtcatgaaaggtcacaacgtcctctgtgccgcggagacgggcagtggaaaaaccctg
agttacctcctgcccatcgtccacagactgcaggctgaatccgaggtggatgctgagagc
gcccacgggattcgcgctgtggttctcgtgccttccagggagctgtccgagcaagtggcc
gccgtgtccaggaggttgtgcgccccgctgggcttgacgacgagcattgtgggcggaggg
cggggtgtcggtcacatcaagagcgtctttaagagggatcatccggatattctggtggcc
acgccgggggccctgatcaaggctctgcggagacgctgcgtggacttgagcgagctcagc
ttctttgtggtagatgaggctgacaccttgttcgaccccagcttttctgacatgctggag
aatatcctcctcagcacgaacattgctagggatcccaaagagacacgaggtcctggccac
aaagcccagctgctggtggtgggcgccaccttccccgggggtgtcggggaagtgctcagc
aaggtgacggacctcggcagcgtggtggttatcaagagcaagatgctgcacttcctcatg
ccacatgtcaaacagacgttcatgaaggtaaagggcacagacaagatcctggagctccac
caagccctgaagatgctccaacagaaagaaggcggtggtgccgctctggttttctgcaac
aagtccgccaccgtcaactggctggggtactcgctggaagagatgggaatgcgccacgca
cgactgcagggggagatgccggccgctctgcgcgcaggaatcttccgaacgtttcagaag
gccggacagatggatgtgttgatatgcacggacattgcctcccgcggcctggacacgtcc
agagtgcgcttggtcgtcaactacgactccccagaatcccacacagactacatccacaga
gcagggagagtggggagggcgggagggcgagaggatggggaggttctcaccttcgtcact
cacccgtgggatgtggagttagtgcagaagattgagatggctgcgcgtaggagaaccagt
ttgccaggcatggaatctgatatacgcgagcccaaacctaaacccacagaaggggaagga
gaggtagaggagtag
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