Gasterosteus aculeatus (three-spined stickleback): 120812054
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Entry
120812054 CDS
T07457
Symbol
lama1
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit alpha-1
KO
K05637
laminin, alpha 1/2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120812054 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120812054 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120812054 (lama1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
Laminin_B
Laminin_N
Laminin_I
COG6_N
Motif
Other DBs
NCBI-GeneID:
120812054
NCBI-ProteinID:
XP_040023769
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All DBs
Position
XXI:complement(17287670..17299133)
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AA seq
1847 aa
AA seq
DB search
MKLLLLLLLMERAVSQQRGLFPAILNLASNAVISSNATCGDPGPEVYCKLVEHVPGRQIK
NPHCLRCDANSVLSKERHPITNAIDGTNYWWQSPSIKNGHQFHWVTITLDLKQIFQVAYI
IIKAANSPRPGDWILERSLDGVTFDPWQFYALSDSECLSRYNMTPRLGPPTYKSDTEVIC
TSYYSRLNPLEHGEIHTSLINSRPGADDLTSDXLNFTSAXYLRLRLQRIRTLXADLMMLS
ARDPREIDPIVTRRYYYSIKDISVGGMCICYGHAQSCPLDLVTKKLKCVCEHNTCGESCD
QCCPGYHQQPWQPGTVSEGNTCEKCNCHNKAEDCFYNQTVSQLSLSTNTHGVRQGGGVCL
DCQQNTAGINCETCAAGFYRPTEVSPYSDSPCVPCNCDLRGSKSSVCSGDDTRTGVSAGQ
CVCQQGFTGRQCDRCAFGYRDFPRCAPCECNLSGSVNTDPCSNCTCKVNVMGAHCDLCKP
GFYNLQGSHELGCTDCFCFGVSDVCESSTWSRAQVFHTSASLRPSQSLHTPPVIYTNDLP
ISNNASGHAHQQVLSWAAPDRFLGNKLVSYRGSLNYSLVYDVPLDNEDHPLPVRSDIIIE
GNGRALRLSPPVVLFFSDLAERSVAVTMAEQRFVDVQSGAHVARDDLLSVMAHVTSLTVR
VHLNASTERPVRLSSMSMDFADSSAVSGRQAVAVETCECPYGYSGTSCESCLPGFYRVGG
VLFGGNCMQCECNDHAYDCDTDGVCLGCTHNTTGPQCDRCLPGFYGDATEGTPGDCRLCP
CPLTELSNSFSPTCALDASGQVSCDRCRDGYAGRTCERCASGFHGNPQVVGGACVRCECN
GNVDLGRAGHCDTVTGECLRCLGNTGGRHCEVCRPGYYGDAVGAKDCRECGCDVSGALSS
VCDATTGRCFCRENVTGLACDRCQSGFFGLQSPEGCRACGCNQLGSLSESCDENGRCQCV
EGVSGDTCDRCSHGYYGFHANGCTACNCDHTGGNCDPEDGACICPPHTEGDTCDRCEAGY
WGHDPTTGCKPCGCTVAGSSAPQCQLTNGQCPCKEGFSGRSCDRCALGHHGYPACPACGC
DLTGSNEEFCNATLGVCDCQRAGKCVCKVGVSGRRCEECVSGWFALSALSPDGCSRCFCS
GVSSDCEEQGGLQRVPITAGPAPAVLSLVSQANLQGVVSGVRQQGGESLLDTRHLDSSRP
IGPLYWRLPPQYQGHQLLSYGGLLSYIVTFYAEDGSGLSNQEPQVLMRGGTVRKHVIYAD
MVAPSNGIRTQHDIRMTEHKWKYFNSVSEKPVSRDDFMSVLGDVEYVIIKASYGTRLQQS
RISNITMETAVEAELDEGNVATLIESCICPPGYAGLSCQDCASGFFRQPLSELPTKKQKS
LFVRPCVRCRCNNHSESCDAETGACLDCQHHTSGRSCSQCAPGHYGNISGSISDCSLCAC
PLVDNSFSPTCASEGGGGEFRCTACQKGYEGRHCERCSEGYYGNPVVVGGSCAPCGCSGW
GSLRPLCDPLSGQCECKAGVKGQSCDRCEERHALQGGECVSCDDECVGVLLDDLEETHFL
SVNMSAIGMAPYRRLVLLANRTRAVQAALSENASVALRLFTVEDELNHLTSDINALLQQV
PRLSNNLEKVDVSVNSTVSQGALLLDDISSLQHHIQVLQRKAGLLNQTGAKELDSANQMH
LLEEVESMMESIRAIDLKGTNASANQELRLSESLVRSLQDDFLSGRAAVDARLRLLSVPL
NVAMETLQLAQTRLSDTELQNRQTRTLLETAHALLHRYKSVHHNLSVELVSVGGVMEDSQ
LLLDDIIFLTEEVTNTSKQVESIAYVISIDEPLGAAGEVISVCYKHR
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgctcctgttgctgctgctgatggagagagctgtatcacagcagagaggactg
ttcccggccatcttgaacctggccagcaacgcagtgatcagcagcaacgccacgtgtggc
gatccaggaccggaggtctactgtaaacttgtggaacatgttccagggcgacagatcaag
aacccacactgcctgagatgtgatgccaactccgttctgtccaaagaacgtcatccgatc
acaaacgccatcgatggcacaaattactggtggcagagtccgagtatcaagaacggtcat
cagtttcactgggtcacgataaccctggacctgaaacagatctttcaggtcgcctacatc
atcatcaaggcagctaactctcctcgaccaggtgactggatcctggaacgctccctggat
ggtgtgacatttgacccctggcagttttacgccctcagtgactctgagtgtttgtctcgc
tacaacatgacgcccagactcggccctccgacctacaagagtgacacagaggtcatctgc
acgtcttactactccagactgaacccgctggaacacggagagattcacacctccctgatt
aacagccgacctggagccgatgacctgacctctgacntgctgaacttcacgtcagctncg
tacctcagactacggcttcagcgaatcagaacgctcnacgccgacctgatgatgctgagc
gcccgtgacccccgagagatcgaccccatcgtcacacggaggtactactactccatcaaa
gacatctcagtgggggggatgtgcatctgttacggccacgcccagagctgcccgctggac
ctcgttaccaagaagttaaagtgtgtgtgtgaacacaacacctgtggagagagctgtgac
caatgttgccccggttaccaccagcagccatggcaacctgggaccgtctccgagggaaac
acctgtgagaagtgtaactgtcacaacaaagcagaggactgcttctacaatcagaccgtc
tcacaactctctttgagtacaaacactcacggcgttcgtcagggaggcggagtctgtttg
gactgtcaacaaaacaccgccggtatcaactgtgagacctgcgctgccgggttctacaga
cctactgaggtttctccatattcagactccccttgtgtcccgtgtaactgtgatctgagg
ggatcaaagtcttcagtctgcagcggagacgacacccggacaggtgtgtctgcggggcag
tgtgtgtgtcagcagggcttcacgggtcggcagtgcgatcgctgtgcctttggatacaga
gacttccctcggtgtgctccatgtgagtgcaacctgtccggcagcgtcaacacagacccc
tgcagcaactgtacctgcaaggtgaatgtgatgggggctcactgtgatctgtgtaaacca
ggtttctacaacctgcaggggagtcacgagctgggctgcaccgactgtttctgcttcggt
gtgtctgacgtgtgtgagagctccacctggtccagagctcaggtgtttcatacaagcgct
tcgcttcgcccctctcagtccctccacactcccccagtcatctacaccaacgacctcccc
atctccaacaacgcttctggccacgcccaccaacaggtgctgtcgtgggcggcgcccgac
cgttttctcggaaacaagctggtttcctacagaggctccctgaactactcgttggtctat
gacgtcccgttggacaacgaggatcatcctctgcctgtccgctctgacatcatcatcgag
ggaaacggccgagctcttcgcctctctcctcccgttgtcctcttcttctcggatctggct
gaacgctctgttgccgtgacgatggccgagcagaggtttgtggacgtccagtcgggcgct
cacgtcgcccgcgacgatctgctctccgtcatggcgcacgtgacatcactgacggtcagg
gttcacctgaacgcctccaccgaaaggcctgtacgtctcagctcaatgtccatggacttt
gctgactctagtgcagtttctggtcgtcaggcggttgccgtggagacgtgtgaatgtccg
tatggttacagcggtacttcgtgtgagtcgtgtctcccggggttctacagagtgggcgga
gtcttgttcggagggaactgcatgcagtgcgagtgtaacgaccacgcgtacgactgtgac
accgacggcgtttgtttggggtgcacccacaacaccacgggcccccagtgtgaccgctgc
ctacccggtttctacggcgacgccaccgagggcacgccgggcgactgtcgcctgtgtccg
tgtcctctgaccgagctgtccaacagcttcagccccacgtgcgcactggacgcctccggc
caggtgtcctgtgaccgctgtcgggacggatacgccgggcgcacctgtgagaggtgtgcc
agcggttttcacggtaacccgcaggtggtgggcggggcctgcgtccgctgcgagtgcaat
ggcaacgtggacctcggcagggcggggcactgtgacactgtcaccggggagtgtctgcga
tgtctgggcaacaccggcgggaggcactgcgaggtctgtcggcccggttactatggagac
gccgtgggcgcaaaggactgtcgggagtgtggctgtgatgtcagcggcgccctctccagt
gtgtgtgatgccacaacaggacgttgtttctgtagagaaaacgtgacgggactcgcgtgt
gaccgctgtcagtctgggttcttcgggctgcaaagtccggagggatgtcgcgcctgtggc
tgcaaccaattaggatctctctctgagtcatgtgatgagaatgggcgttgccagtgcgtg
gagggtgtgtctggagatacgtgtgaccgctgtagccatggttactatggtttccatgcc
aacggctgcacagcatgcaactgtgatcacactggagggaactgtgatccagaggacggc
gcgtgcatctgcccgccacacacagagggagacacttgtgacaggtgtgaggccggttac
tggggtcatgaccccaccacaggttgcaagccgtgcggctgcacggtggctggaagctcc
gcccctcagtgtcagctgaccaatgggcagtgtccgtgcaaagagggcttctctggccga
tcatgtgaccgctgtgcccttggtcaccacggttacccagcatgcccagcatgcggctgc
gacctgacaggatccaacgaagagttctgcaacgccacgctgggagtgtgtgactgtcag
cgcgccggaaagtgtgtgtgcaaggtgggcgtgtctgggcggcgctgtgaggagtgcgtg
tccggctggtttgctctgtcggctctgagtcctgacggctgctcgcggtgcttctgctcg
ggtgtcagctccgactgcgaggagcagggaggcctgcagcgagtaccgatcaccgcgggt
cccgcccccgctgtcctctcgttggtcagccaggccaacctgcagggtgtcgtgtctgga
gtccgccaacagggcggcgagtcgctgctcgacacccgtcacctggacagcagccggcca
atcggcccgctgtactggagactgcccccccagtaccaaggccatcagctgctgtcgtac
ggcggtctgctgtcttacatcgtcaccttctacgccgaggacggctcggggctgtccaat
caggaacctcaggtgctaatgaggggcgggaccgtgaggaagcatgtgatatatgctgac
atggtcgctcctagcaacggcatcaggacacagcacgacatccggatgacagagcacaag
tggaagtactttaactcggtgtcggagaagccggtgagtcgcgatgacttcatgtcggtc
ctcggcgacgttgagtacgtcatcatcaaagcgtcatacgggacccgactgcagcagagc
aggatctctaacatcaccatggagacggcggtggaggcggagctagatgagggaaacgtg
gccacgctgatcgagtcctgcatttgtccacctggatacgccgggctgtcctgtcaggac
tgtgcttccgggtttttccgtcagcctctgtctgagctaccgactaagaagcagaagtcg
ctgtttgttcgtccgtgtgttcgatgccgctgcaacaaccacagcgagagttgtgacgcg
gagaccggagcctgtctggactgtcagcatcacaccagtgggcgcagctgctcgcagtgt
gccccggggcattatgggaacatcagcggctccatcagcgactgctcgctgtgtgcctgc
cccctggtggacaacagtttcagtcccacctgtgcgtcagagggtggaggcggtgaattc
cgctgcaccgcctgtcagaaggggtatgaggggagacactgcgagaggtgttcggagggt
tactacggtaacccggtggtggtgggcgggtcctgtgcgccctgcggctgcagtgggtgg
ggctcgctgcgcccgctgtgcgacccactgagtggacagtgtgagtgcaaggctggggtt
aaaggtcagtcatgtgaccggtgcgaggaaagacacgccctgcagggaggagaatgtgtg
tcgtgcgacgatgagtgcgtcggtgttctgttggacgaccttgaagaaacccacttcctg
tccgtcaacatgagcgccattggcatggcgccataccgccggctggttctgctggcaaac
cggaccagagccgtccaggcggccctctcagaaaacgcctccgttgctctgcggctgttc
acagtggaagacgagctcaatcatttgacctccgacatcaacgcgctgctgcagcaggtc
ccgcgcctgtccaacaacctggagaaagtggatgtgtctgtaaacagcaccgtttcccag
ggtgcactgctgctggatgacatcagcagccttcagcaccacatccaggtgcttcagagg
aaggcggggcttttgaaccaaaccggtgccaaggagcttgattcggccaatcagatgcat
ctgctggaggaggtggagtccatgatggaaagcatccgcgccatcgacctgaagggcacc
aacgcctcggccaatcaggagctccgcctctccgagtctctcgtccgatcgctgcaggac
gacttcctgtccggcagggcggcagtagacgccagactccgcctcctctccgtgcccctc
aatgttgctatggaaacactgcaacttgctcaaacgcggctgagcgacactgaactacaa
aacagacaaacacgcactctcctggaaaccgcacacgctttgcttcaccgctacaagtcc
gtccatcacaacctcagtgtggagttggtgtctgtgggcggagtgatggaggacagtcag
ctgctgctggatgacatcatctttctgacggaggaggtcaccaacaccagcaagcaggtg
gagtcaatagcgtatgttataagcatagatgaacccctgggtgcagcaggtgaagtcatt
agcgtatgttataagcatagatga
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