Gasterosteus aculeatus (three-spined stickleback): 120812198
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Entry
120812198 CDS
T07457
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120812198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120812198
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120812198
mRNA degradation factors
5'-3' decay
Decapping complex
120812198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
RVT_3
Motif
Other DBs
NCBI-GeneID:
120812198
NCBI-ProteinID:
XP_040023938
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Position
Y:8539551..8562520
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AA seq
1389 aa
AA seq
DB search
MNPVSPVPQHMASNSNIDIEDATQHLRDILKLDRPGNTTDASSDILRMPTLNGELNGLLG
AAGLLGGTDRSSMSDSTRLISTDLCSTQECQIICLSGDDGSTCTPITSNNVEIVASQDTS
INSKARGSNKVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVTFAE
RSLLKGFTGAVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKIFDQVVVHIRRPEDSP
LNSHRRLIWCPFIQDDNQDDISQTLALLHEDLAEVWDLEALRANHSSWPVDDTDVKEGLI
IVKGHTQRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSC
LLFCDNHKRQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLK
ASLDLASEYLILTDVQRKVLYVMELRQDLEKGKGSFTAVSEFLLTHPVLSFGIQDVSHCR
LRHTEVLPAEEESESMTTEGTQGLTESKSGIQIKLYCVHTKSLQDVQIWFQPSSPVFLPN
SDTQDGFAGFSDNLTDHSSDKESGSGSQTDLRKIPSLPATTDFLSTSGANSGTKLMTPDA
FMTPSTLVPASPGSSASSLTVVTAINSNSDLTNGAMDEVGQSPTRAENSSSSSSLTLSSS
SPRAVSAVLLPVLENLQALASPNGPLALDSPQVLDSPLLPPLASPTRARSPDVISSASTA
MSQDMPEIASQTLQLQRSHVSILEPVPLSALQTDSMASAASALHLLTSPRSANNGLLPPE
LGGADGPVGGAGGDSEHRLSHTPSLLENALLQENPGVGGGSSDGNVGHTSWPAAPDITRE
TRNNLRDNDLGEYSREESKDRSLSSPYHRRSYHLTQIDSQDAGGEQSDPNDEGSGLVSST
VNCGSRSSHRLPVKDWKTSPRASPKVKRKTKKDDGELSQSRQMDSGQMNAEVQDELLMLL
RSQQRELTDLRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLAERQSDQQQLQEQLIS
TLSSVLTNRMDKVLREEIKKTVPPSISKSLEPVTGHLSNTIAAKLTAVEITLKDNVSKVV
KSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSIFQQINNSFKQGTQEYI
QQLESHMKNKKQREQETQDPVISQLQQTIETFQSSTDQLANNITANVRAEVQHQIQMMVG
NLQESILSHVQRIVKGEVSMAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDYQTQQANIL
QLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLSSNL
TTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLYTFLQQDPHGPLSKRARRLM
MMLQGLVSH
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagtttcccctgtcccccaacacatggcgtccaattccaacatagatattgag
gatgcgacccagcatcttcgggacatcctaaagctcgatcgtcccgggaacaccaccgat
gcatccagtgatattctaagaatgccaactttaaatggagagctgaatgggttattggga
gcagcaggccttctgggaggcactgatcggtcatccatgtcggactctaccagactcatc
tccacggacctgtgcagcactcaggagtgtcagataatctgcctttctggtgatgatggt
tccacctgtacccccatcacctccaacaacgtggagatagtggcaagtcaggataccagc
atcaatagcaaggctcgtggcagcaacaaggtaaagattcaacctgttgcgaagtacgac
tgggaacacaagtattattatggcagactgattgctgtctccaactccttcctggcctat
gccatcagaggagccaacaaccatgcgatgattcgcgtcctgagtgtgacttttgccgag
cgctctctgctgaagggcttcaccggagctgttacagatctggcctttgctcacctcgac
tcctcgctgttgggctgcgtagatgaggcgggcaacctcatggtctggcagctcacctgc
actggaagcaagatatttgatcaggtggtagttcatatccgacggccggaggactctccg
ctgaactcccaccgtcgcctcatctggtgcccgtttatccaggatgacaaccaggacgac
ataagccagacgttagcccttctccacgaagacttggcggaggtgtgggacctggaggcg
ttgagagccaaccacagcagttggcctgtggatgacacggacgtgaaagaaggcctcatc
atagtcaagggacatacccagagggtcagtgagggggctctgtctccggatggaacagtg
ttggccacagccagccacgatgggtacatcaagttctggcagatatacatcgaaggggta
caggacaagccacggtgtcttcatgaattgcggccccacggaggacgtcccctctcctgc
cttctgttctgcgacaaccacaaaagacaggaccccgacgttcctttctggcggttcctt
ataactggagcggatcagaaccaggagttgaaaatgtggtgcactgtttcctggacctgc
ttacagaccatcaggttctcaccagatttgttcaactcctcagttctaccaagtctgaag
gccagtctggacctcgcttcggagtacctcatcctcactgacgtacagaggaaggttctg
tatgtgatggagctccggcaggacctagagaaaggaaagggcagttttacagcagtgtca
gagttcctgctgactcaccccgtgctcagctttgggatccaggacgtctcccactgcaga
ctgcgacacaccgaggttctccccgctgaagaggagagcgagagtatgaccacagagggc
acgcaaggactaacagagtcgaagtctgggatccagattaaactttactgtgtccacacc
aagagtctacaggatgtccagatctggtttcagcccagctctccagttttccttcccaat
tctgatactcaggatggttttgcaggcttttcagacaatctcactgaccacagctcggac
aaagaatcagggagcggctcccaaactgacctaaggaagatcccctctcttcctgctacc
actgacttcctgtcaacctcgggggctaacagtgggaccaagctaatgactccagatgcc
ttcatgacaccaagcactttggtaccagcatccccgggcagcagcgccagcagtctgacc
gttgtgacagcgatcaacagcaactctgacttaactaacggcgctatggatgaagtcggt
cagagtccaaccagagcagagaacagcagcagcagcagcagcctgacactttccagcagc
agcccaagagctgtttctgcagtgcttctgcctgtacttgagaacctacaggcattagca
tcccccaacggtcctctcgcactggacagccctcaggttctggactcccccctccttcct
cctctggcttctccgaccagagcccgctcccccgacgtcatctcctcggcctccaccgcc
atgtcccaggatatgccggagatcgcatcgcagaccctacagcttcagcgcagccacgtg
tccattttggagccggtgcctctctccgccctccagacggacagcatggcttccgctgca
tctgccctgcacctgctcacctccccgcgctcagccaacaacggcctgttgccgcccgaa
cttgggggtgcagatggtccggtgggcggggcaggaggagattctgagcacagactcagc
cacaccccgtccctgctggagaacgccttattgcaggaaaaccccggggtcggtggaggc
tcttcagacggcaatgtgggccacacatcgtggccggctgcgcccgacatcaccagggaa
accaggaacaatctaagggacaacgacctcggagaatattcgagagaggagtcgaaggac
agaagcctcagctcaccttaccatcggcgctcctatcacctcacacagatcgacagtcag
gacgccggcggggaacagagtgacccgaacgatgaggggtccggcctcgtatcatccaca
gtaaattgcggctctcgttcctctcaccgactaccggttaaggactggaagacctcacca
cgagcctcgcccaaagtgaagaggaagaccaagaaagatgacggggaattgtctcagtcc
aggcaaatggactctggtcagatgaatgccgaagtgcaggacgagctgctgatgctcctg
cgtagccagcagagggagctcactgacctgcgtgggcagatcgaagccatgcagagcacc
atcatggcccaagttgagcacgtcctcaccaaccaccaggagcaggagcagcggagacta
gagcgggttctggcagagagacagagtgaccagcagcagcttcaggagcagctcatcagc
acccttagctcggtgctaaccaacaggatggacaaagtgctccgtgaggaaataaagaag
accgtcccaccaagcatctctaaaagtctggagccggtgacggggcatctgagcaacacc
atcgctgccaagctgaccgctgtggagatcacactgaaggacaatgtcagcaaggtggtc
aagtccaagaacacgacggatgcgattggtcgagcagcggccgaagcgatgcaggggccc
atccaggcggcctacaaagacgccttccagagcatcgtgctgccggtctttgagagaggc
tgccagtccatcttccagcaaatcaacaacagctttaaacaaggcactcaagaatacatc
cagcagctcgagagccacatgaagaacaagaagcagagagagcaggagacacaagaccct
gtgatcagccagctccagcagaccatcgagaccttccagagctccaccgatcagctggcc
aataacatcacggctaatgtgcgggccgaggtccagcatcagatccagatgatggtggga
aatttgcaggagtcgattctgagccatgtgcagcgaatcgtcaaaggcgaggtgagcatg
gcgatgaaggagcagcaggcggtggtcacctccagcatcatgcaggcgatgaggtcagcg
gccagcactcccgtccccacagcgcacctcgactaccagacgcagcaggccaacatcctg
cagctcctccagcagggccagctgaaccaggctttccagcaggctctgtctgccacagat
ctgaacctggtcctgtatgtttgcgagaccattgactcccagcaggtgtttgggcagcac
ccgtgtcctctcagccagcccgtgctgctgtcgctcatccagcagctctcctccaacctc
accacccgctctgagctcaaaatcagctacctggaggacgccgtgatgaatctggaccac
ggcgacccgctaacccgagaccacatgtcctcggtgctggcccaggtcaggccgaagctc
tacaccttcctgcagcaggacccccacggcccgctcagcaagagggcgcgccgcctgatg
atgatgctgcagggcctcgtcagccactag
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