Gasterosteus aculeatus (three-spined stickleback): 120812949
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Entry
120812949 CDS
T07457
Symbol
ddx46
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120812949 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120812949 (ddx46)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120812949 (ddx46)
Spliceosome [BR:
gat03041
]
Complex A
U2 snRNP components
U2 related factors
120812949 (ddx46)
Complex B
120812949 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
120812949
NCBI-ProteinID:
XP_040025055
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRSRDRKRV
RRSRSRERRRSRSRDRRRSGSRTRARRSRSASPSKSRRPDEKSRSKEKDSVDPLSEKKKI
KEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEEMKQGKK
WSLEDDEDDDEDNSAPMEGDDEEDGEGKGENEEKEIKKEEEKEEEEEEEEEKESEAPMEL
EAEDDDVDPLDAYMEEVKQEVKKFNMGAMKGNDKKGAMTVTKVMTVLKTRKGPNTHKKKG
ELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEAYRRNFYVEVPEL
ARMTPEEVNTYRLELEGINVKGKGCPKPIKTWVQCGVSMKILSAMRRHGYDKPTPIQAQA
IPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQIT
KECKKFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRR
ATYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPLEVQ
VGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADTLLKDLMKA
SYPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYED
YVHRAGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSGSPVPQELEQLWASFKDQQKA
EGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFN
SKKRVKDLSAPGSASASSGSASSSAGVQGGLPGLGPPSAGNIQKLEMAKRLALKINAQKN
LGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAE
QAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGER
KIYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKSRYKVL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgagtccagacactaccggaagaggtccacgtcccggggacggtcgggaagc
cgctccaagagtcgctccccggacaaacgctccaagaaggacgaccgagaccggaaccgc
agggagcgatctcggagccgggaccgccgcaggtcccggtccagggacaggaaacgagtc
cggcgctccaggagcagagagcgaaggaggtccagaagccgagacaggaggaggtcaggc
agcaggacccgagctcggcggtcccggtccgctagtcccagcaagagcaggaggccagac
gaaaagtcaaggagcaaggagaaggacagtgtggaccctttatccgaaaagaagaagatc
aaagaggagaaggaggatgagaaggtggaggaccaagactttgaccagaacaagctggag
gaggagatgaggaagaggaaggagcgtgtggagaagtggagggaggagcagaggaagaag
gccatcgagaacattggggagatcaagagggagctggaggagatgaagcagggcaagaag
tggagcctggaggacgacgaggacgacgacgaggacaactctgctccgatggaaggagac
gacgaggaagacggagagggcaagggggagaacgaagagaaggagataaagaaagaggag
gagaaggaggaggaagaggaggaggaagaggagaaggagagcgaggccccaatggagctg
gaggccgaggacgacgacgtcgaccctctggacgcctacatggaggaggtgaagcaggag
gtgaagaagttcaacatgggagccatgaagggaaacgacaagaaaggagcgatgacggta
accaaggtgatgactgtccttaaaaccagaaaaggacccaacacccacaagaagaagggg
gagctgatggagaacgaccaggacgccatggagtactcatcagaggaggaggaggtggac
ctgcagacggctctgacgggctttcagaccaagcagaggaaggtcctggagcccgtggac
cacggcaagatccagtacgaggcgtaccgcaggaacttctacgtggaggtgcccgagctg
gccaggatgacgccggaagaggtgaacacgtaccgactggagctggagggcatcaacgtc
aaagggaagggatgtcccaaacccatcaagacctgggtgcagtgcggcgtgtccatgaag
atcctcagcgccatgaggaggcacggctacgataagcccaccccgatccaggcccaggcc
atccccgccatcatgtcgggccgagacctcatcggcatcgccaagaccggcagcggcaag
accatcgccttcctgctgcccatgttcagacacatcatggaccagaggcccctggaggag
tccgagggacccatctcggtgatcatgactcccaccagagagctggctctgcagatcacc
aaggagtgtaagaagttctccaagcagctgggcctcagggtggtgtgtgtgtacggaggc
acgggcatcagcgagcagattgctgagctgaagagaggagcggagatcatcgtgtgcacc
ccgggcagaatgatcgacatgttgggagccaacagcggtcgagtcaccaacctgcggcgg
gccacctacgtggtgctggacgaggccgacaggatgttcgacatgggcttcgagccgcag
gtgatgcgcatcgtggacaacgtgcgcccggaccggcagaccgtcatgttctcggccacc
ttcccccgggccatggaggcgctggcccggaggatcctggccaagcccctggaggtgcag
gtggggggccgcagtgtggtctgctccgacgtggagcagcacgtgctggtgatcgaagag
gacaagaagttcctgaagctgctggagatcctgggtcactaccaggagaagggctcggtc
atcatcttcgtggacaaacaggagcacgcggacacgctgctgaaggacctgatgaaggcc
tcgtacccctgcatgtcgctgcacggcgggatcgaccagtacgacagagacagcatcatc
aacgacttcaagaacggggcgtgtcgcctgatggtggccacctccgtggcggccagaggg
ctggacgtcaagcagctcatcctggtggtcaactacaactgccccaaccactacgaggac
tacgtccaccgggcggggcgcacgggccgcgccggcaacaagggcttcgcctacaccttc
atcacggacgatcaggtccgctacgccggtgacatcatcaaggcgctggagctttccggc
tctcccgtcccgcaggagctggagcagctgtgggcctccttcaaggaccagcagaaagcg
gagggaaagtccatcaagagcagcagcggcttctcgggaaaaggcttcaagttcgacgag
acggaacacgctctggccaacgagaggaagaagctgcagaaagccgctctggggctgcag
gactcggacgacgaggacggcgccctggacattgaggagcaaatcgagagcatgttcaac
tccaagaagagggtgaaggatctgtcggctcccgggtcggcctccgcttcctcgggctcg
gcctcctcctcggcgggcgtccagggggggctgccgggcctcggacccccgtccgccggg
aacatccagaaactggagatggccaagaggctggcgctgaagatcaacgctcagaagaac
ctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgggggggc
accatcatgacgccctcggtgtcggcgaagaccatcgcggagcagctggcggagaagatc
aacgccaagctgaactacacccccgtagagaagctggaggaggagcggcaggcggctgaa
caggccgagacggtcaagagatacgaggaggagctggagatcaacgacttcccccagacg
gccaggtggaaggtgacgtctaaggaagctctgcagaggatcggcgagtactcggaggcc
gccatcaccatccgaggaacctacttccctccaggcaaggagcccaaggagggagaacgc
aagatctacctggctattgaaagtgcaaacgagctggctgtgcagaaagccaagacggag
atcacgcgcttgatcaaggaggagctcatcagattacaaaattcctaccagccgacaagc
aaaagccggtacaaagttctgtag
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integrated database retrieval system
