Gasterosteus aculeatus (three-spined stickleback): 120815630
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Entry
120815630 CDS
T07457
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04382
Cornified envelope formation
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04518
Integrin signaling
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120815630
04518 Integrin signaling
120815630
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120815630
09142 Cell motility
04820 Cytoskeleton in muscle cells
120815630
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120815630
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120815630
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120815630
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120815630
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120815630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120815630
NCBI-ProteinID:
XP_040026384
UniProt:
G3PLA6
LinkDB
All DBs
Position
3:complement(2231004..2251356)
Genome browser
AA seq
1672 aa
AA seq
DB search
MGRPMLGVLLILFAGMLMGTGAKNCVCNGRSRCHCAGVKGDRGEKGFKGIQGLPGPEGRR
GSYGHSGPLGPKGSTGPDGPDGAKGDSGYEGKEGLAGSHGLPGIPGLQGPPGTTGSPGCN
GTDGDEGPPGNPGVHGPDGSAGPPGLPGPKGESWGSTISITGPHGPQGRKGQPGNPGPFG
ERGQPGDPGRRGSVGFPGRSGSPGSKGQEGIGGIPGPQGLKGRQGPRGPPGPPGQIKEFL
TGSLLSKGEKGSKGDIGIKGCHGEAGDPGYENYIKGAKGDRGPQGPEGKQGMDGNPGQST
QGRPGPRGDPGYPGTPGGTGEKGDKGLPGPPGAVGDIFGPVTAPLKGFRGDPGFPGLPGL
PGRQGVEGFPGPDGPPGQSSGIHVSGPTGPNGFPGPKGDPGEPGDIYLGLPGQDGDHGDQ
GPPGDRGPPGPPEDRTNRIIKGIPGMKGTRGMPGPTGYDGQHGMKGGKGEPCYECVGLGF
PGPPGPRGPQGAPGYNQGPGAKGDPGYPGSIGLPGRPGPLGPMGFQGPSGQKGDSYTDQT
PGEKGEEGDPGQPGPPGVDALPGFPGLPGRKGDQGPPGNSYPFHGADGDRGFPGQPGPVG
RQGPVGYPGPVGYGPAGSMGSTGDVGVPGLPGQPGIPGQKGEPSHSHTKGFPGPPGFKGL
PGSLGRPGNTGAPGIPGIPGQKGQKGESGEVSLPGRPGIPGQKGDKGPPGIPGPTTRGLP
GRRGSSGISGPAGVKGDGGPGYPGPRGSPGPPGEDGVQGPVGDPGNPGRPGNPGVDGNPG
LSGEKGNQGSVGHPGPPGNKGSCNSDLPGPRGPEGPDGYPGHPGPNGFAGEKGNPGLPGF
GRPGVPGVPGVLGPSVPGSPGLPGQKGMKGHSGLPGLSGPRGEPGPDGLPGYGQDGLPGI
AGPPGQIGDPGPDGAPGSVGPPGMDGEPGLTGPPGPAPLPPIDFFGSIGDPGEPGYPGLP
GANGDTGSVGPKGQRGFAGAPGSPGQRGPTGDPGGDDQVDSEGSRGPAGAPGDSGVTGPP
GPKGIKGDQGQSGEPGPQGAPGPTGNKGINGEPNYNGYGLPGPVGQKGEPASCNAGVLGQ
KGEPGSFGPLGLPGKRGDKGNPGPDGQNGPAGYQGPKGSDGHPGNKGQPGPTGLAGDPGQ
PGVGGYPGLKGNQGRDGIPGSPGQKGDTNIIGGTPGRRGNTGQQGFPGNPGPPGLSVTGR
SGPIGDRGFPGRKGARGPKGLPGMEGACVPGSKGDHGHPGNPGVPGYRGLPGLPGPTGPG
RMGDRGDPGPTGAQGYSGPHGDSGPQGPPGTRGRPGNQGPRSDFGPSGGFGPPGVKGDPG
YIPGPPGQPGMKGFPGPTGLKGKARVTYEPGSPGAPGPSGNPGAPGKTGPSGSPGQPGQP
GVRGERGSSPDGHPGFTGLKGDKGRAGLPGPEGRLGDPGHKGSQGLPGIGGPGYVDSFLI
ARHSQSTKVPDCPRGTTLIFSGYSFLFINGNERAHGQDLGTMGSCLPRFSTMPFLFCDTE
SNCRYASRNDYSYWLSTDTPMPTNMASITGDTLATYISRCSVCETTSNVIAVHSQTTLTP
ECPQNWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDS
YSYWLASLDPRSMFSNPVPQTVKGPSLQSVISRCRVCRKQWQPTDERRGDNF
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccaatgcttggagttcttctcatcctctttgctgggatgctgatgggcact
ggggccaaaaattgcgtgtgcaatggaagatccaggtgccactgtgcaggagtgaaaggc
gacaggggagagaaaggctttaaaggaattcaaggcctcccagggccagagggccgtcgt
ggatcatatggccattctggtcctttgggaccaaagggcagcactgggcctgatggaccg
gacggggccaaaggcgattcgggctatgagggtaaagaaggactcgctgggtctcacggc
ttaccgggtatcccaggtttacaagggcctcctggaaccaccgggagcccgggctgcaac
ggcactgatggagacgagggacctcctggcaatcccggcgtccatggccctgacggaagt
gcaggtcctcctggtctgcctggacctaagggtgagtcttgggggtcaacaatttcaata
acggggccacacgggcctcaagggaggaaaggacagccggggaatccaggtccctttgga
gagcgtggacaaccaggagaccctggacgacggggttctgtggggtttcctggtcgttct
gggtctccaggatcaaagggtcaagaaggcataggcggtattccaggacctcagggacta
aagggcagacaaggaccacgaggcccaccggggccaccgggtcagattaaggaatttctc
actgggagtctcttgtcaaagggtgagaaaggaagcaaaggagacataggaataaaagga
tgccatggtgaagcaggagacccaggttatgagaattacatcaaaggagcaaagggagac
agagggccgcagggtccagagggaaaacaagggatggatggcaatccgggccaatcaaca
caggggcggcccggccccagaggtgatccaggatatccagggacaccaggagggacgggt
gaaaagggagataagggtctccctggtccccctggtgcagttggagatatatttggccct
gtgactgcaccactcaaggggtttcgtggggatcctggttttccaggcttacctgggctc
cctggacgtcaaggtgttgaaggattccctggacctgatggacctccaggccaatcatct
gggattcatgtgtcaggccctactggtcccaatgggtttccaggccccaaaggggaccct
ggggagcctggggatatttatctaggacttccaggtcaagatggggatcatggggatcaa
ggtcctcctggggatcggggcccacctgggcctcctgaagacagaactaacaggattatc
aaaggtattccgggaatgaagggaacaagaggtatgcctggacctacaggatatgatgga
cagcatggaatgaaaggagggaagggggagccctgttatgaatgtgttggattaggattc
ccaggaccaccgggtcctcgcggcccacagggcgcccctggatataatcaagggccaggt
gctaaaggtgatccaggctacccgggatctattggcttacctggaagaccaggtcctctt
ggtccaatgggatttcaaggcccttcgggacaaaagggagactcatatactgaccaaacc
cctggggaaaagggagaggaaggagatccgggacagcctggcccacctggtgtagatgcc
ctccctgggtttcctggactacctggtcgcaagggggaccaaggccctccagggaattcg
tatcccttccatggtgcagatggagaccggggtttcccaggacaaccaggacctgtaggc
agacaaggaccagttggctaccctggcccagtgggatatggccctgctggatctatgggt
agtaccggagatgttggggtacctgggctgccagggcaacctgggattccaggccagaaa
ggcgaaccgagccacagccacactaaaggatttcccggaccacctggatttaaaggtctg
cctggttcacttggaagaccaggtaatacaggagcaccaggtatcccaggaataccaggt
caaaaaggtcaaaaaggagaaagtggtgaggtgtcattacctggaaggccaggtatccca
ggacaaaaaggggacaaggggccgccaggtatcccaggtcctacaacgaggggcttgcct
ggtcggcgaggttccagtggaatttctggtcctgcaggcgtgaagggggatggcgggcct
ggataccctggccccagaggatcccctgggcctccaggagaagacggcgttcaggggccc
gtaggagatcctgggaaccctggccgacctgggaacccaggagtagatggaaatccaggt
ttatcaggagaaaagggaaatcaaggttctgtaggccacccaggaccacctggtaataaa
ggttcatgtaatagtgatttacctgggccaaggggaccagaaggaccagatgggtatcca
ggacatccaggtccgaatggcttcgctggtgagaaggggaacccaggtttgccagggttt
ggtcgtcctggcgtccccggtgttcctggtgttcttgggccgtcagtgccaggttcacct
ggccttcctggacaaaaagggatgaagggacacagcggcctgcctggtctatcaggaccg
agaggagaacctggaccagatgggttaccaggatatggacaagatgggttgcctggaatt
gcaggaccaccaggccaaataggtgacccaggcccagatggagccccgggttccgtgggt
ccaccaggtatggatggtgaaccaggtttgacaggtcctccgggcccagcgccgctacca
ccaatagattttttcggctcaataggggaccctggcgagccaggttaccctggtctacct
ggtgccaatggagatactggcagtgttggaccaaaagggcagagagggtttgctggagca
ccagggagtcctggacaaagaggtcccacaggtgatccaggtggtgatgaccaagttgat
tcagaaggaagtcgaggacctgctggagctccaggagactcaggagtcacagggcctcca
ggcccaaagggaataaaaggagatcaaggacaatctggagagccaggtccacaaggtgca
ccaggtccaactggtaacaaaggcatcaatggcgagccaaattataatggatatggattg
cctggaccagtaggacaaaaaggtgaaccagcatcgtgcaatgctggtgtgttgggtcag
aaaggagaacctggttcttttggacctctaggtttaccaggaaagcgtggagacaaagga
aacccagggcctgatggacaaaatggtccagcaggctatcaagggcctaaaggttcagat
ggacatccaggaaacaaaggacagccaggaccaactggacttgcaggtgacccgggccag
ccaggtgtcggtggttatccaggtcttaaaggcaatcagggccgggatgggattcctggt
tcaccagggcagaaaggagacactaatataataggagggacacctgggagacgtggtaac
acaggtcaacaaggtttccccgggaaccctggtccccctggcttgtctgttacaggacgt
tctggaccaataggagacagaggatttccaggtcgaaagggggcccgtggtccaaaagga
ctaccaggaatggaaggagcttgtgttcctgggtcaaaaggagaccatggtcatcctggc
aatcctggtgtcccaggctatcgtggcttacctggccttccaggtcctacagggccgggg
cgaatgggagacagaggggacccaggtccaacgggagcccaaggctatagtggaccccac
ggagattcaggccctcaaggaccaccgggtacaagaggcagacctggaaaccagggacca
agaagtgattttggtccttctggaggctttggacctcctggtgttaaaggagaccctgga
tacatccctggcccccccgggcagcctgggatgaaaggttttcctggaccaactggctta
aagggcaaggcacgtgtcacgtatgaaccaggatctcccggcgcgcccggtccctctggt
aatcctggagccccagggaagacgggaccatcaggatcaccaggacaaccaggtcagccg
ggtgtcagaggcgagcgtggttcaagcccagatggccatcccggatttactggactcaaa
ggagacaaaggaagagcaggactgccaggtcctgaaggcagacttggagacccaggccat
aagggtagtcaagggttgccaggcataggtggtccaggttatgtggacagtttcctgatt
gccagacacagtcagagcaccaaggtccctgactgtcctcgtggcaccaccctcatcttc
tctggttactccttcctcttcatcaatggaaacgagagagctcacggtcaggaccttggc
accatgggaagctgcctcccccgtttctccaccatgcccttcctgttctgtgacacggag
agtaactgccgctatgcttctcgtaacgactattcctactggttgtccactgacactcct
atgccaaccaacatggcttccatcactggggatacactggccacctacatcagcaggtgc
tccgtgtgtgaaaccacctccaatgtcatagccgtccacagccagacaactttgacaccc
gaatgccctcaaaactgggagtcactatggacgggatactcctttgtcatgcaaacgggt
gctggagcagagggctcctctcagccgctggtgtcaccagggtcatgtctggaaagcttc
cgccaagtgcccttcatcgagtgtcatggcaggggaacttgtaactattaccctgactcc
tatagctactggctggcctccctagaccccagaagcatgttcagtaatcctgttcctcaa
acagtgaagggaccttctctacaaagtgtcatcagtcgttgtcgggtctgcaggaaacaa
tggcaaccaacagacgaaagacgcggggacaatttttaa
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integrated database retrieval system
