Gasterosteus aculeatus (three-spined stickleback): 120815732
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Entry
120815732 CDS
T07457
Symbol
chd7
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 7
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gat03036
]
120815732 (chd7)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120815732 (chd7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
Chromo_MIT1
HTH_CHD1_Hrp3
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
120815732
NCBI-ProteinID:
XP_040026583
LinkDB
All DBs
Position
3:complement(6080980..6134921)
Genome browser
AA seq
3263 aa
AA seq
DB search
MADPGMLSLFGDDAGLFSDGLDGLGDCFPPQPASAQSNPLTQQSNPSLSHELQGNRGYHQ
GMIHGAGAGPGQPKLGQMYDHGPYTGYDQPVGPGGRMMAQNGPSQGPPIVNPAMNGMASH
YHNNPANSSNPLHGYQGDAGTGGGGAGVWGQQTQQQQTRSAYQQPPTQAGAGPNQMGAYQ
ISQGNYGGMQGPPTSNAARMNQHYPSQSMAPPPAQDPSHYLGHGMGGTQMRLPQPQAQAQ
GYPNMGHTARYPQSPSRQPSIPHQHQPGMGGFGTSRYPGYQAQYGAMGPGMGQGGNVNAN
TSPAMGPGQLGQRFNQGSTPAAGPQVQRYPPGPPHQPQPHPTHSAPMQQAGQQGPPMHPQ
HPQSLPQAQNPPQSHLAPPAQGNYPSPSSMSPMRVLGTPTPPPQQGRPPSAGLVGAPEVA
GYVALQSQPNAMVQRTPQIPLSAPQPQHQQPHNMPPSAGQMYPGLGPQRGPQMGPSRPPL
QQGPLEAPASQGGDQRLLQVPRSGPPMQPTPIGFQGPAVGQHGVPAPTQCLAPPAQSTST
QHAHMPPQPRHLQSTPPLPNQASHPWAPPASHPLSSPPLTPQKVPHVQHSPSDPSGDASM
MVPDRSTVGAGTTGQPISTEQPSNQVTKPKRKRKKKAKVAAGEDEGGKEAREEAAAAREG
EEDAKSDYLGTGSDAGEHVAGTGTVEGSSPPMEEKKKRKKKPKEKVEGKEPKAPKTPKTP
KTPKEPKEPKEKKAKSSTPKTKTPKKPSSKKVESEGGSSAAKKDSKRKREPSVSDDVEVK
SPPPSPPEEDDDDGVQKRRSRRQVKRKRYTEDLEFRISDDDDSGDDSPAPKSPSSQQQDV
AEAEGPIVEKIMGKRITKKQLELGEEAQVEEFYVKFKGFSYLHCRWADLEELEKDKRIHQ
KVKRFRAKQQLNSFIAEMDDEPFNPDYVEVDRVLDISESPDENGETVTLYLVKWCSLPYE
DSTWELKADIDQSKIEEYERIAARTPNTTRMDRPPAADWKQLEGSRDYKNSNALREYQLE
GLNWLTFNWYNSRNCILADEMGLGKTIQSITFLYEMFMKGIEGPFLVIAPLSTIPNWERE
FRTWTELNAVVYHGSQASRKTIQAYEMYYRDTQGKIIKGAYRFHAIITTFEMILTDCPEL
RSVNWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPE
RFPSEQTFMTEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQ
KKYYRAILEKNFSFLSKGGPGGGGGPNVPNLLNTMMELRKCCNHPYLINGAEEKIAEDFR
ESHGGRADMPDMALQAMVQAAGKLVLIDKLLPKLKAGGHRVLVFSQMVRCLDILEDYLIQ
KRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW
NPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA
NSGVQQLSKKEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIESEGKGST
FAKASFVAAGNRTDISLEDPDFWQKWAKKAELDLDAMNGRNTLVIDTPRVRKQTRHFSSA
KDDEMLEFSELESDEDEPSRPTSKPRRPQDKSQGYPRSECFRVEKNLLVYGWGRWSDILT
HGRFKRPLKEADVETICRALLAYCLLHYRGDENIKSFIWDLITPSADGTTKTLTNHSGLS
TPVPRGQERARRGNPRPPPSADSTKPIGWPSCNSXPPYWQEGXHTKRHLKHHCNKVLLRV
RMLYYLRQEVIGDQADRILEGADSSELDIWIPQPFHAEVPADWWESEADKSLLIGVFKHG
YEKYNSMRADPALCFLERVGMPDAKAIAAEQRGSDMMTDGVEGEDEDPEYKPLRMPFKDE
MEDFTNSPLDDKDEHVDGEAEAKSGENGQGVGGASGSSERLYWPAASALTARLRRLITAY
QRSNRREQLRQEALSRPDGRRRRRRDFLPAIGMVTDATGGGATYIQDAAAVFMTDGGPYL
TKGGAYFAKGGQFLPEASPVMSASSLMTDGAMYYKERRQRWTRREEADFYRVVSTFGVVY
DTQRQRFDWAQFRAFARLDKKTDESLEKYYYSFIAMCKRVCRMQVKTETELPDPTLIIDP
ITEERASRTLYRIELLRRIREQVLPHPLLSERLKLCQSSPDLPEWWENGRHDRDLLLGAC
KHGVSRTDYHILNDPALAFLEAHQRSTGQRAAAQGEXPPSSIGSGGEHPAPLFTAAEMAN
GAAAAEVSLIAAKEEEGEGKEVKMETEEGDASDILMVKTENVKEESTASPTKEVKKEEEE
ATPTLKKEEQEQHSEDGETTSKPAEDTEKLSVTPADSLGDPTETTAKLSEHPNSTATDQP
DHKDAEQEDREEKELPDSPKSPKSAEAEKSPEDEDDEEERMDEDDKSEKSSQAEVSAASE
QKNFDEDSIASLSTSARDGFHPDDLPETSALQALQDRSYSFSFWPKGRVVFNRRDKICEG
XLRGKWPVNRXHIFDFPSNMLPGHSAAVAAAASTVATVTESPLQRRSLAEMTMAGIHTAY
SGSEDKTLSPQVHDDALSLTAPRQRRRRRRKIEIEAERAAKRRNLMEMVAQLRESHSAAE
SQSQAIDLTKGMHHHHKAAPSLAGFPSALVTSPSLKAQMELLQQAPPSGHRANGSMEADL
PIMRRRRGRRKNVEGLDLLFMGNKRAGGDDTNGTKVSGAEGVKDSARAQRPLCVPEQSPS
GRSLASGSVEEEEAAVSNKELGEWLRQHPTYTMDMTGFTPKSDDALLSQFSKPKQKRHRC
RNPNKIDINTLTGEERVPVVNRRNGRKMGGAMAPPMKELPRWLLENPEYSIAPDWTDIVK
QSGFLPEAMFDRLLTGPVVREEGVRRRGRRPKSEIAKAAAAAQATAAAHAAQASAAQSAG
GINPLLLNSLFGGMDLSSLQSLQSLQLAAGLMAFPHPNDPKQAAAAASMLPLMLPGMGGM
PNMAASLPNMFSLGSLFGGNLANAAAAAASNSMAATSRNTNGTTGGEGQDGDETAKTKDE
EGEDFEEGGDEEEEAEGSEEGAKKARKKGRDGRRAAQKSLHDATGAPGDSSAESCINGDT
AALLAAAGMSANSLAFNPFLLSTMAPGLLYPSMFLPPGLGGLSLPGFPTASTLAELQSAM
AGALGGNPVTANPPKNEDEDEDEKEGLKASGEEEEVDGGKSDFGEEEGGEEGGAEPKADD
SAPEDGGPEDEDEATSPQKDKSD
NT seq
9792 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccagggatgttgagcttattcggggacgatgcagggctattctcagatgga
ttggatggcttgggggactgctttcctccacagcctgcttccgcccagtccaacccttta
acccagcagagtaacccctcactgagccacgagctccagggaaacaggggctaccaccag
ggtatgatccatggggccggggccggccctgggcaacctaaattggggcagatgtatgac
catggcccctacacaggctacgatcaacctgtgggccccggaggacgaatgatggcccag
aacggccccagccagggaccaccaatcgtgaaccctgccatgaacggcatggcttcccac
taccataataacccagctaactctagcaaccccctccatgggtaccagggtgatgctggc
acaggtggaggtggagctggtgtttggggacagcaaacgcagcaacagcagactagatca
gcttatcagcagcctccgacacaagcaggggccggccctaaccagatgggagcctatcag
atatcccaaggcaactatggtgggatgcaaggcccgcccacatccaatgcagctcgcatg
aaccaacactacccttcgcagagcatggcaccccctcctgctcaggacccatctcactac
ctgggacatggaatgggtggcactcagatgagacttccccagccccaggcgcaagcccag
ggctatcccaacatgggccacacagcccgatacccacaatccccttccagacagccttca
atcccccaccagcaccaaccgggcatgggagggtttgggacttcccggtaccctggctat
caggcccagtatggagccatgggacctgggatgggccaggggggcaatgtcaatgctaac
acaagcccggccatgggcccaggacagctcggccagaggtttaaccagggatcaacccca
gcagctgggccacaagtgcagcgatatccacctggaccaccgcaccaaccccaaccccat
ccaacccattctgccccaatgcagcaggcagggcaacagggcccgcccatgcacccccaa
caccctcaaagtctgccccaggcccaaaacccgccacaatcccaccttgcccccccagct
cagggaaattacccctccccgtcatcaatgtcccccatgcgggttttggggaccccgacc
cctcctccccagcagggaagaccccccagcgcagggttagttggagctccggaggttgca
ggttatgtagccctgcagtctcagcccaatgctatggtgcagagaactccccaaatcccc
ctgtctgccccacagccccaacaccagcagccccacaacatgccccccagtgcggggcag
atgtatcccggcttggggccgcagcgtggtccacagatggggccaagcaggcctccgctt
cagcaagggcctcttgaagctccggccagccaggggggagaccagcgtctgctccaagtc
ccccgaagcgggccgcccatgcagcccactcccattggtttccagggtcctgctgttggg
cagcacggcgtcccggccccgacacagtgcttggcgccccctgcccagagcacttcgacg
cagcatgcacacatgcctccccagccgcgccacctgcagagcacaccccctctccccaac
caggcctcccacccctgggcgccccctgcttcccacccgctctcctcaccccccctcact
ccacagaaagtgcctcacgtacagcattccccctccgacccgtcaggcgacgcctcaatg
atggttcctgacaggtcgacggttggcgccggaaccactggccagccaatcagcacagag
cagcccagcaaccaggtgaccaagccaaaaaggaaaaggaagaagaaagctaaagtagcg
gccggagaggatgaaggagggaaggaggcgagagaggaagcagcagcagccagagaagga
gaggaagacgcaaagtctgactatctcggaacaggaagtgatgcgggcgaacatgtggcc
ggcacaggtactgtagagggaagttcaccgccgatggaggagaaaaagaagcggaaaaag
aaaccaaaggagaaggtggagggcaaggagcccaaggccccgaagacgcccaagaccccc
aagacccccaaagagcccaaggagcccaaggagaagaaagccaagagctcaacgcccaag
accaagacccccaagaaacccagcagtaagaaggttgagtctgagggcgggtctagcgct
gctaagaaggattccaagaggaagagagagccgtcggtcagtgatgacgtggaggtgaag
tctccccctccctcgccccctgaggaggacgacgatgacggtgtccagaagcgtcgctcc
cgccgccaggtaaagaggaagaggtacacggaggatctggagttcaggatctcggacgac
gacgacagcggcgacgactcgccggcacccaagtccccgtcgtcacagcaacaggacgtg
gctgaggctgaggggcccatcgtggagaagatcatgggcaaacgcatcaccaagaaacag
ctggagttgggggaggaagcacaggtggaggagttctacgtcaagttcaagggcttttcg
taccttcactgtcgctgggcggacctggaggagctggagaaggacaagagaatacaccag
aaggtcaagaggttccgggctaagcagcaacttaacagcttcatcgccgagatggacgac
gagccttttaacccggactacgtggaggtggaccgcgtcctggacatctccgagagccca
gatgaaaacggagagacggtgaccttgtatctggtgaaatggtgcagcctgccttatgaa
gactccacttgggagctgaaggctgacatcgaccagtccaagatagaggaatatgaacgc
atcgcagcacgcacacccaacactacgagaatggatcggcctcctgccgccgactggaaa
cagctggagggctccagggactacaagaacagcaacgcactcagggaataccagctagaa
ggcctcaactggctaaccttcaactggtacaactcacgtaactgtatcttggcggacgag
atgggtctaggcaagaccatccagtccattacattcctctacgagatgttcatgaagggc
atcgaggggcccttcctggtcatcgccccgctctccaccatccccaactgggagagggag
ttcaggacctggacggagctcaacgcggtggtctaccacggcagccaggccagccgcaag
accatccaggcctacgagatgtactacagagacacacagggtaagataataaagggagcg
tatcggttccacgccatcataacaacctttgagatgattctgaccgactgcccggagctg
cgcagcgtgaactggcgctgcgtggtgatcgacgaggcccaccgcctcaaaaaccgcaac
tgcaaactgttggaaggactgaaaatgatggacatggagcacaaagttctgttgacggga
actcctctccagaacaccgtggaggagctcttcagcttgcttaacttcctggagcccgag
cgcttcccctccgaacagacattcatgactgaatttggagaccttaagactgaagagcag
gttcagaaactgcaggccattctgaagcccatgatgctgagaagactgaaggaggacgtg
gagaagaacctggccccgaaagaggagaccatcatcgaggtggagctaaccaacatccag
aagaaatactacagggccattctggagaagaacttctccttcctgtctaaaggaggtcct
ggcggaggtggaggaccaaacgtccccaacctcctcaacaccatgatggagttgaggaaa
tgctgcaaccacccgtacctcatcaatggagcggaagagaaaattgccgaggatttcagg
gaatcccacggcggcagggcggatatgccggacatggccctccaagccatggtgcaggcc
gcgggcaagctggtgctcattgacaagctgctgcccaaactgaaggccggcggtcaccga
gtcctggtgttcagtcagatggtccgctgcctggacatcctggaggactacctcatccag
aaaaggtatccctacgaacgcatagacggccgagttcggggaaacctgcggcaagcggcc
atcgaccgtttctccagacccgactcggaccgctttgtcttcctgctgtgtacgagagcc
ggaggactcggcatcaacctgaccgcagcagacacctgcatcatcttcgactcggactgg
aaccctcagaatgacctgcaggcccaggccaggtgccaccgcatcggccagtccaaggca
gtgaagatctaccgtctgatcaccaggaacagctacgagagggagatgttcgacaaggcc
agtctcaagctggggctggacaaggcggtcctccagagcatgagtggacgagagaatgcc
aacagcggggtccagcagttgtccaagaaggaggtggaggacctgctgagaaagggagcg
tacggggctctgatggacgaagaggacgagggctccaaattctgcgaggaagacattgac
cagatcctccagcgacgaacccacaccatcaccatcgagtccgaggggaagggctccacc
ttcgccaaggccagttttgtcgcagcgggtaaccgaacagacatttctcttgaggatccg
gacttctggcagaaatgggccaagaaggcagagcttgacctggacgccatgaatggaagg
aacacgctggtgatcgacacgccgagggtgaggaagcaaacgcgccacttcagcagcgcc
aaagacgacgagatgctcgagttctccgagctggagagcgacgaggacgagccgagcagg
cccacgtccaaacccagacggccccaggacaagagccagggctacccccggtccgagtgc
ttcagggtggagaagaacctcctggtctacgggtggggcaggtggagcgacatcctgact
cacggtcgcttcaagcggcccctgaaggaggccgacgtggagaccatctgcagggccctg
ctggcctactgcctactgcattatcgcggagacgagaacatcaagagcttcatctgggac
ctgatcaccccgagtgcagacgggaccaccaagacactgaccaaccactctggtctctcc
accccggtccctcgagggcaggaaagggcaagaaggggaaacccacggccccctccttcc
gcagactccacgaagccgattggttggcccagctgcaattcctgaccaccttactggcaa
gaaggatagcatacaaaaagacacctgaaacaccactgtaacaaggtgctgctgcgggtg
aggatgctgtactacctgagacaggaagtcatcggcgaccaggccgatcgcatcctggaa
ggcgctgactccagtgagttggacatctggatccctcagccgttccacgccgaggtcccg
gccgactggtgggagagcgaggccgacaaatccctcctcatcggcgtcttcaaacatggc
tacgagaagtacaactctatgcgagccgaccccgccctgtgtttcttggagagggtgggc
atgcccgacgccaaggccattgccgctgagcagaggggctctgacatgatgacagatggc
gttgagggtgaggatgaggatccagagtacaagcccctgcggatgcctttcaaagacgaa
atggaggacttcaccaactctcctctggatgacaaagatgagcacgtggacggtgaagcg
gaagccaagtcaggtgaaaacggtcagggcgtgggcggagcctcgggctccagcgagcgt
ctctactggccggcggcctctgctctcactgcccggctgcgtcgcctcatcacggcctac
cagcgctccaaccgcagggagcagctccgccaggaggccctcagccggcccgacgggcgc
cgccgccgccgccgggacttcctgccagccatcggcatggttaccgacgcaacgggagga
ggggcaacttacatccaagatgctgcggcggtgttcatgacggatggaggcccgtacctg
actaaaggaggggcctactttgccaaaggggggcagttcctgccggaggcgtcgccggtg
atgagcgccagctcgctgatgactgatggcgccatgtactacaaggaaagacgacaacgg
tggactcgtcgcgaggaggcagatttctatcgcgtggtgtccacctttggagtcgtctat
gacacccagcggcagagattcgactgggcgcagttcagggccttcgctcgactggacaag
aaaacggatgagagcctggagaaatactactactccttcatcgccatgtgcaaacgggtc
tgcaggatgcaggtcaagactgaaaccgaactccctgacccgaccctgatcatcgacccc
atcacagaggagcgcgcctctcgcaccctgtaccgcatagagctgctccgccgcatccgg
gagcaggtcctcccccacccgctgctctcggagcgcctcaagctttgccaatcctccccg
gacctcccagagtggtgggagaacggccgccacgaccgcgacctcctcctgggagcctgc
aagcacggcgtgagccggacagactaccacatcttaaacgaccccgccttggccttcctg
gaggcccaccagcgctccaccggccagcgggccgcggcccagggtgagnnaccaccaagc
agcattgggagcggcggagagcaccccgcgcccctcttcaccgccgcggagatggcgaac
ggtgcggcggctgccgaagtgtcccttattgcagcgaaagaggaggagggcgaagggaag
gaggtgaaaatggaaactgaggaaggagatgcaagcgacattctgatggtgaagactgaa
aatgtcaaagaggaaagtaccgcttcaccgacaaaagaggtgaagaaagaggaggaggaa
gccacgcccacactgaaaaaagaggagcaggagcagcacagtgaagacggagagacgacc
tcgaagccggcagaagacacagagaagttgagtgtcactcctgcagactcgctcggggac
ccgacagagacgactgccaagctctcagagcatcccaactccactgcaacagatcaaccg
gaccacaaggatgcagagcaggaggaccgggaggagaaggagctcccagactctcccaaa
tctccaaagtcagccgaggcagagaaaagcccagaggacgaggacgacgaggaggagagg
atggatgaggacgacaaatcggagaagtcttctcaggctgaagtgagcgctgcgtccgaa
cagaagaactttgacgaggacagcatcgcgtcgctgagcacttcggccagagacgggttc
caccccgacgacctgccggagacctcggctctgcaggccctacaggaccgctcctactct
ttctccttctggcccaagggccgagtggtgttcaaccggagggataaaatctgcgagggt
ngtctgagaggcaagtggcccgtaaacaggncgcacatttttgacttccccagcaacatg
ctaccggggcacagtgccgctgtcgctgcagcagcatccaccgtcgccacagtgaccgag
agcccgctacagaggcggagcctcgctgagatgacgatggccggtatccacacagcttac
agcgggagtgaggataaaacgctatcgccacaggttcatgacgacgctctcagcctgact
gcgcctcgccagaggaggaggaggcggaggaagatcgagatcgaggcggagagggcggcc
aagaggcgcaacctgatggagatggtggcgcagctgagagagagtcactctgccgccgag
tcccagagccaggccatcgacctcactaaggggatgcaccatcaccacaaggccgctccc
tcgttggccggcttccccagtgccctggtgacgagcccttcactcaaggcccagatggag
ttactgcagcaagccccgccctccggtcacagagccaacggttcaatggaggctgacttg
ccaatcatgaggaggaggcggggccgcaggaaaaatgtggaaggtctggacctgctgttc
atgggcaacaagagagcaggaggggatgacaccaatgggacaaaagtctcaggtgcagag
ggggttaaggattctgcccgggcccaaagacccctctgcgtccccgagcagagccccagt
ggccggtctctggcctcaggcagtgtggaggaggaggaggcagcggtttccaacaaggag
ctgggggagtggctgaggcagcaccctacatacaccatggacatgactggattcacacca
aagagcgatgatgcactgctgtctcagttctccaagcccaagcagaagcgccaccgctgt
cgaaaccccaacaagatcgacatcaacaccctaaccggagaagagcgagtgcctgtagtc
aaccgacgcaacggacgcaagatgggcggagctatggctccacccatgaaggagctcccc
agatggttgctggagaacccggagtattctatagcccccgattggaccgacatcgttaag
cagtcgggtttcctcccggaggccatgtttgaccgcctattgacgggccccgttgtcagg
gaggagggcgtccgtcgtcgggggcgacgaccaaaatctgagatcgccaaggcggcggcc
gccgcccaggccacggcggcagctcacgcggcccaggcctctgctgctcaatctgcaggc
ggaatcaaccctctgctgttgaacagtctgtttggaggcatggacctgtcgtccctgcag
agcctccagtcgctccagttggccgctggtctgatggcgttccctcaccccaacgacccc
aagcaggccgccgctgctgcctccatgctgcccctcatgctgcccggaatgggaggcatg
cccaacatggccgcctccctccctaacatgttcagtctaggcagcctgtttggcggcaat
ctggcgaacgccgccgccgctgcagcatcgaactccatggccgccacgtcacggaacacc
aacggaacaacgggtggcgagggacaagacggcgacgagacggcgaagacgaaggatgag
gagggagaagactttgaggaaggaggagacgaggaggaggaggctgagggtagtgaggag
ggggccaagaaggcgagaaagaagggacgagatggcagacgagcggcgcagaagtcgctc
cacgacgcgacgggagcccccggcgactcgtcggcagagtcctgcatcaacggcgacacg
gcggcgctgctggccgcagccggcatgtcggccaactcgctggcgttcaaccccttcctc
ctctccaccatggcccccggcctcctctacccctccatgttcctgcctccgggcctcggg
gggctcagcctgcccggcttccccaccgcctccaccctggccgagctgcagagcgccatg
gccggagcgctgggggggaatcccgtgaccgccaacccccccaagaacgaggacgaggac
gaggatgagaaggaggggctgaaagcttcgggagaggaagaggaggtggatggaggcaag
agtgactttggcgaggaggagggtggagaggagggcggagccgagccgaaagcagacgat
tcggccccggaggacggagggccggaggacgaggacgaggcgacgtctccacagaaggac
aagagtgactga
DBGET
integrated database retrieval system
