Gasterosteus aculeatus (three-spined stickleback): 120816301
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Entry
120816301 CDS
T07457
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03013
Nucleocytoplasmic transport
gat03015
mRNA surveillance pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120816301 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
120816301 (acin1a)
03015 mRNA surveillance pathway
120816301 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120816301 (acin1a)
03041 Spliceosome [BR:
gat03041
]
120816301 (acin1a)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120816301 (acin1a)
Spliceosome [BR:
gat03041
]
Complex C
Other components
EJC/TREX
120816301 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
HeH
Motif
Other DBs
NCBI-GeneID:
120816301
NCBI-ProteinID:
XP_040027768
LinkDB
All DBs
Position
III:2798957..2812156
Genome browser
AA seq
1644 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQRTSTAN
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNEPEDHTEVNNSTSCP
PQAQEATPGLAEQHKPPGPSGVDNLFSAVNKEEGNRNQEAEMPGPPASGSMAVGVPDGEH
RPEKGSASKEAPSDSDDDDSEDGEEDGGDDDDWESGTRRRSHREPARAPTTRERSGAPCQ
PPQQHMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAQARRSSSTSSSGSSS
SGSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHHASGAGERQDGSSLATSF
PGRGPPEGLVSAITHTANTAGHVSFPTIPGINQGIPGAHSAHIQLPVGVRKATATEERHS
EIERERALELERQRKLEQERAMEEERERADVLEREERQRALDQERMERQQALEREEREKA
LQRERELTLERERQDREVALAREREERERALAQEMEIERQKELERQRALEQERQERERRE
REEMERARALEQERKERERALEQERLQRERALEAERKEKERIEREKALEQERLERERLER
QRALDQERLEREKAFEQQRVEMERALEKERLEREKALERERLEREKALEQERMERERALE
QEKLKQERALEQQRLELERKEKERIEREKSLERERIEKEKALEREREEKERLAREAAQKE
ERERALQQEKLEREEKERALEQERLEKEKAMQKEKEEMEAERARMAERESHLPPSKRGRD
IGLTSLSTPLPLSAVPGRKSSTKGGEQEDDHASKSRVEADEHSATTSPTPPVPQSSFRKF
RFSRDSPIQLQSSSPSMVIKRPRNFSDTPQPQASPGSSLTDSAKSHEEGLQSSTEQEGPE
KVTKQEVTGHVGGTPEEETTLAPVSEKDGAKGSVSEDKEKEYTRKVDESHATNPLDSAQR
RGRDAKKEEKQARQRSTSNDSSSSESDSGSSSSGSSGSSSSSQEKTISTTRGRREGEPDR
DISPQHQMTRHAKAEGLKETHTASPCKRDPPVEKSKAAADGDTPTKKTIMDAPTREESQR
KRTNKEEEMDKKRQVKETAMAEAEKLPETNEETPKAFSARKISISSSKMSPGTGSAEVEQ
DAGAAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIRQSLGQEAVVDLDPEQAVLSG
PEDEEKERADQDLQIQRTVTQVVHLESQENGEKETKKSRHEDSEEEDPQGDGERTGAPSD
KMDTSFPGAMETQSPSHTSHDVESNTVTPSDTFIRRSISQQKTGVSITIDDPVRSARKPS
PPRGKVSNIVHISNLVRPFTLGQLKELLSRTGTLLEEGFWIDKIKSHCFVTYCSPEEAVA
TRASLHGVKWPQSNPKVLRVDFCQKDELDFHKGLADRPAAEDQGPGAARGRPPGLPSLLP
ERDQWAEREREMERREKGRAEREWDRDKVREFGKPGEEKEGGPPRSHSRERRRKERGKSK
EKKTEKKEKPAEDPPAKLLDDLFRKTKAAPCIYWLPLTDEEFVQREAARADRMKEREKRR
KEQDEEKEKKREEERKERMKAGGVPTGERSEGEKDRDRERDRDRGRDRERENDKRRDGYR
RPEGRGEDGGRRSRSRSDPRERRR
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtcccttcgagtagcg
gatttaaaagctgctcttgaggagagaggactttcgaaaagtgggcagaagaatgctctc
gttaaaagactcaaaggggcactcatgcttgagaatcttcagaggacctccactgctaac
attggactgcagccaaactcacagattggtgaggaaatgagccagaacagctttatcaag
cagtatctggctaagcaacaggagcttctgaggcagcggctggaaagagaggcccgcgaa
gcatacgacacaaatgagccagaggaccacacagaagtcaataacagtacatcatgccct
cctcaagcccaggaggccacgccaggattggctgagcagcacaagccgcccggcccgtct
ggtgtcgacaatttgtttagtgcagtgaataaggaagagggcaacaggaaccaggaggct
gaaatgcccggtcctcccgcttctggctctatggctgtaggcgtccctgacggcgagcat
cggccagagaaggggtctgcctccaaagaagccccttcagacagcgacgacgacgatagt
gaggatggcgaggaggatgggggcgatgacgacgattgggaaagcggcactcggaggaga
agccacagagagccggccagagcgcccacaaccagagagcggtccggagccccctgtcaa
cccccgcagcaacacatgccctcccttttgtcccctcaactccgccagccaactcctcct
ccctccccacccccagagctgtctttcccactgcctgacaccccgaaacagagccccccg
agtccagatgtagcccaagccaggcgctcatcgagcacctccagctctgggtcctccagc
agcggcagccgcagtagcagcccagagccccagagaagtgggcatgccgagcgcaagccg
ggcccactgacccttctggcacgtaaaatggagtcagaaggagcgttctctggagcaggt
tggcaccacgccagtggggcaggtgaaaggcaagacggaagttctctggcaacatctttt
cctggtagagggcctccagagggtctggtgtctgccatcactcacacagccaacactgcc
ggccacgtgtcctttcccacaattccaggcattaaccagggtatcccaggagcacattcg
gctcatattcaactacctgttggtgtgcgcaaagccactgcaacagaagagaggcactct
gaaatagaacgagaaagggctctagagctggagcggcagaggaaacttgagcaagaacga
gcaatggaagaagagcgggaaagagctgatgtgctggagagagaggaaagacagagggca
cttgaccaagagcgaatggaacgacagcaggccttggaaagagaagaacgcgagaaagct
ttgcagcgggagagagaactcaccctcgaacgagagagacaggacagggaagtagctttg
gctagagagagggaagagagggagcgagccttggctcaagagatggagatagagaggcag
aaggagcttgagagacagagggccctggagcaggagcgtcaggagagagagaggcgggaa
agagaagaaatggagagggcaagggccttggagcaggagaggaaggagcgagagagggcg
cttgagcaggaaaggcttcagagagagagagctctggaggctgagagaaaggaaaaggag
aggatcgagcgggaaaaggctctggagcaggagaggttggaaagggaaaggttggagaga
cagagagccttggaccaagagagactggagagagagaaagcctttgagcaacagagagtg
gaaatggagagagccctggagaaggagcgactagagagagagaaagcccttgagagagag
cgtttggagagagagaaagccttggagcaagagagaatggagagagaacgagctctagaa
caagaaaaattgaagcaagagagagccttggagcagcagaggttagagcttgagaggaag
gaaaaggagagaattgagagggagaaatcattggagcgagaaaggatagagaaggaaaag
gccttggaacgagaaagggaggagaaagaaagattggcaagagaggcagcacagaaagag
gagagggagagagctctgcagcaggagaagcttgagagggaggagaaagagagggctctg
gaacaagagaggctagaaaaggagaaggccatgcagaaagaaaaggaggagatggaggcc
gagagagctcggatggctgagagggaaagtcacctccctccgtccaagcgcggccgtgac
atcggtctcacctccttgtccactcctctccccctttctgctgtaccaggtagaaagtcc
tcaacaaaggggggagagcaggaagatgatcatgcttcaaagtcccgggttgaagcagac
gaacacagcgccaccacgtcaccaacgcctccggtgcctcaatcctcctttaggaagttc
cggttctcaagggacagcccgattcagctgcaatcttcctccccttccatggtcatcaag
cgacctcgtaacttctccgataccccccagccccaggcctcacctggctcctccctcacc
gacagcgcaaaaagccacgaggaaggactccagtcctccactgaacaggaaggcccggag
aaggtgacaaagcaggaggtcacgggacacgtggggggcactccggaggaggagaccaca
cttgccccggtttccgaaaaagatggagccaagggctctgtgtcggaggacaaggaaaag
gaatacaccagaaaagtggatgaaagccatgctacaaacccactggacagcgcacagcgt
aggggaagagacgcgaagaaggaagagaagcaagcgagacaaagatcaacgtctaatgat
tcctcatcctcagaatccgactctgggtcctcatcctccgggtcttctggctcatcctcg
tcctctcaagagaagactatctccactacaagaggcagacgggaaggggaacctgaccga
gatatctcaccacagcaccagatgacacgacatgcaaaggctgagggtttaaaggaaact
catacagcctccccttgtaaaagagacccgcctgtagagaagagtaaagcagccgctgat
ggagatactcccacaaagaaaacaatcatggacgcgccaaccagagaggagtcacaaaga
aagaggacaaacaaggaagaagaaatggacaaaaaaaggcaggtgaaggagactgccatg
gcagaggctgagaaacttccagagaccaacgaggagacgccaaaggccttttccgctcgt
aagatctctatcagcagcagtaaaatgtccccaggcactggcagtgccgaggtcgagcag
gacgcaggagccgcagccggtcgcaagaggaggtggggctccagcacagccgtcactgcc
aagaaaccttccatcagtatcaccaccgattcactcaagtccctgatcccagacattcgc
cagagtctcgggcaggaagcagttgtggacctggacccggagcaagcagtcctctctggg
ccggaggatgaagagaaagagcgggctgaccaagaccttcaaattcaacgtactgtaaca
caggtggtgcacttggagagtcaggagaatggagagaaggagacaaagaagagcagacat
gaggattcggaggaagaggacccacagggagacggggaaaggaccggggctcccagcgac
aaaatggacacctcgttccctggagccatggaaacccagtctccgtcacacaccagccat
gatgtagaaagcaacactgtgacccccagcgacaccttcatccgtcgctccatcagccag
cagaaaacgggtgtctccatcacaattgatgaccccgttcgctcggcccggaagccttcg
ccccctcgagggaaagtctccaacattgttcacatcagcaacctggtgagaccgttcacc
ctggggcagcttaaggagctgctcagcagaaccggcaccctgttggaggagggcttctgg
atagacaaaatcaagtctcactgctttgtcacctactgtagcccagaggaggccgttgcc
acacgggcatctcttcatggggtgaaatggcctcagagcaacccaaaagtcctccgtgtg
gacttctgccagaaggatgagctggacttccacaaaggcttggcagacaggcccgcggca
gaggaccaggggcccggagccgcccgcgggcgacctccgggcctgccctccctcctccct
gagcgcgaccagtgggctgagcgcgagcgggagatggagcgccgggagaaggggagagct
gagcgggagtgggatcgcgacaaggtccgagaatttgggaaaccgggtgaagagaaggag
ggaggtcctcccaggtcacactccagggagagacgccgcaaggagcggggaaaaagcaag
gagaagaagaccgagaagaaagagaaaccagccgaggatccccctgcaaagctgcttgat
gatttgttccgcaaaactaaagcggctccttgcatatactggcttccacttacggatgaa
gagtttgttcagcgggaagctgcccgcgcagaccggatgaaggagcgggagaaacggagg
aaggagcaggatgaggagaaggagaagaaaagggaagaggagcgcaaggaaaggatgaag
gctggaggtgtgccaactggagagcgcagtgagggggagaaagacagggacagagagagg
gacagagaccgagggagggacagggagcgggagaatgacaaacgcagggatggctaccgt
agaccagagggccgcggggaagacggggggcgccgctctcgcagccgcagcgacccgcga
gaaaggcggcgttaa
DBGET
integrated database retrieval system
