Gasterosteus aculeatus (three-spined stickleback): 120816357
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Entry
120816357 CDS
T07457
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03030
DNA replication
gat03410
Base excision repair
gat03420
Nucleotide excision repair
gat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120816357 (lig1)
03410 Base excision repair
120816357 (lig1)
03420 Nucleotide excision repair
120816357 (lig1)
03430 Mismatch repair
120816357 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gat03032
]
120816357 (lig1)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120816357 (lig1)
Enzymes [BR:
gat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120816357 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
120816357 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
120816357 (lig1)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120816357 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120816357 (lig1)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
120816357 (lig1)
NER (nucleotide excision repair)
Other NER factors
120816357 (lig1)
MMR (mismatch excision repair)
Other MMR factors
120816357 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
120816357
NCBI-ProteinID:
XP_040027837
LinkDB
All DBs
Position
3:15317452..15341423
Genome browser
AA seq
1039 aa
AA seq
DB search
MQRSIASFFQPKCRDKGPQKKASDGPLKKPVKSPLKVQNGAQEADSPVKRVAKRSRQILD
SDEEEDESPAAKDQVAHRGQGDEEALDTKEKKDDVIKAVPAPVSPPPAPAAPAAPAAPAS
SAPPGTQISPTGIAKRKTARKMFPKRKLNESGSGGDDDESPKDEAEAKEEQGQQNKRPRV
EAGAGTPGITDEPMEDDAQEESSTKAAAEARGPDEEVAKKKKKMKKEGGEKKEEEERVER
KNSDEKVKKAEGAEKKNEVKEETDDEKGLAVAKKKNNKKKKVEEEVVEEVEEVVAGEVVE
KETREKEESPKSQTARKRKEAREQKDKEPLKAPISSFFAPRKAAVKTEKDEGERRTSGYR
KTSGEMKTSAEETKDTKGESSRGPTALRPVRARATILCTRPGWKQGQKVPYLAVARTFEK
IEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAV
AQATGRQLDKIKAEAQEKGDLGLVAESSRSNQPMMFPAGPVXRRGGVFKKLKEIAGMSGN
SAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQGFP
PAVLDAGMGKSAESRRSWIEEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPG
VPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSK
YPDIVSRVPTVTKDSVTSCVLDAEAVAWDREKKQIQPFQVLTTRKRKDVEASEITVQVCV
YAFDLLYLNGESLVRQPLCRRRALLKESFSEVEGEFVFARSIDSNNTDAIAEFLEQSVRD
SCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRAGAYGG
FLLACYDDDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRIDPGAEPDVWLD
AVQVWEVKCADLSLSPVYKAAMGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLY
KKQQQIQNQEEKADPEDYY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcattgcgtccttctttcagcccaagtgcagggacaagggcccccagaag
aaagcctcggatggacccctgaaaaaacccgtcaaaagccctctcaaggtgcagaacggc
gcccaggaagccgactcgcccgtcaagagggtcgccaaacgcagccgccagatcctggac
agcgacgaggaggaggacgagagccccgccgccaaggaccaagtggcccacagaggacaa
ggagacgaagaagccctcgatacgaaagaaaagaaggacgacgtcatcaaggcggttccc
gcccccgtgtctcctccacctgcgcccgccgcgcccgccgcgcccgccgctccggcctct
tctgctccgcctgggacccaaatctcgcccaccggcatcgccaaacgcaagacggcgagg
aagatgttccccaagaggaagctcaacgagagcgggagcggcggcgacgacgacgagagc
ccaaaagacgaggcggaggccaaggaggagcagggtcagcaaaacaagcgaccccgcgtg
gaggccggcgcaggtacgcctgggatcaccgatgagcccatggaggatgacgcccaggaa
gaaagcagcacaaaggctgcggccgaggctcgcggtccagatgaagaggtcgcaaagaag
aagaagaagatgaagaaggaaggaggagaaaaaaaggaggaggaggagcgagtagagaga
aagaactctgatgagaaagtaaagaaagctgagggggcggaaaagaaaaatgaagtaaaa
gaggaaactgatgatgagaaaggactcgctgttgccaagaagaagaacaacaagaagaag
aaggtggaggaggaggtggtggaggaggtggaggaggtcgtggcgggggaggtggttgaa
aaggagacgcgagagaaagaagagagcccaaaaagtcagacggcgagaaagcggaaagaa
gccagagagcagaaagataaggagccactcaaagcgcccatcagcagtttctttgcgccg
agaaaagccgcagtgaagacggagaaggacgaaggcgagaggaggacgagcggctatagg
aagacgagcggcgagatgaagacttcggcggaggagaccaaagacacgaaaggcgagtcg
agccgggggccgacggcactacgacccgtccgggcccgggctaccatcctgtgtaccaga
cctggctggaagcagggccagaaagtgccatacttggcggtggcgcgcaccttcgagaag
atagaagaggactctggcaggctgaggaacatcgagacgctgtccaacctgctgcgctcc
gtgctgctgctctctccagacgacctgctctgctgcgtgtacctgtgtttgaaccagctc
ggccccgcctacctggggatggagctcggcgtcggagagacggtgctgatgaaagccgtt
gctcaagcaaccgggcgacaattggacaaaatcaaggcggaggcgcaggagaagggagac
ttgggcctcgtggccgagagttcccgtagcaaccagcccatgatgtttccagccggccca
gtctgacggcgggggggcgtgttcaagaaactgaaggaaatcgccggcatgagcgggaac
tcggccatgaataagaaaatcgacatcatcaaaggccttttcgtggcgtgccggttctcc
gaggcccgctacatcgtcaggtccctggctgggaagctgaggataggcctggccgagcag
agcgtcctatcggcgctaagccaggcggtgtgcctgtcgccccccggacaaggtttcccc
cccgcggtgctcgacgctgggatggggaagagcgccgagagccggcggtcctggatcgaa
gagaagagtctcattctcaaacagacttactgcgagatgcccaactacgacgtcctcatc
cccgttctgctgaaagaaggcatagacgagctgcccaatcactgcaagctgactccaggt
gtgccgctgagacccatgttggcccaccccaccaaaggcgtcggcgaggtgatgaagagg
ttcgacgaggcggcgttcacctgcgagtacaagtacgacggcgagcgcgcacagatccac
attctggagagcggcgaggttcgggtgttcagccgcaaccaggaagacaacaccagcaaa
taccccgacatcgtctcccgcgtccccacggtgacgaaggactctgtgacgtcctgcgtc
ctggacgcggaggccgtggcctgggaccgggagaagaagcagattcagcccttccaggtg
ctgaccacccgcaagaggaaggacgtggaggcctcggagatcacagtccaagtgtgcgtg
tacgccttcgacctcctgtatctcaacggcgagtcgctggtgcggcagccgttgtgtcga
cgtcgcgctctgcttaaagaaagtttctcagaagtggaaggagagttcgtgttcgcccga
tccatcgactccaacaacacagacgccatcgcagagttcctggaacagtctgtccgagac
tcctgtgagggtctgatggtgaagactctggagaaagacgccacctatgaaattgccaag
cgctcacacaactggctgaagctgaagaaggactacctggacggcgtgggcgacacggtg
gacctgtgcgtgatcggcgcctacctggggaaaggcaagcgggccggcgcctacgggggc
ttcctgctggcctgctacgacgacgacaacgaggagttccagtccgtctgcaagatcggg
acgggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcacattctg
cccaaaccgcgcgcctactaccgcatcgacccgggggcggagcccgacgtgtggctggac
gccgtgcaggtctgggaagtgaagtgcgccgacctgtcgctgtcgcccgtctacaaggcc
gccatggggatggtggatccagagaagggcatttctctgaggtttccccgcttccttcgg
atcagagacgacaagaagcccgaggacgccacgactggagctcagattgctgatttgtac
aagaagcagcagcagatccagaaccaggaggagaaagcggacccggaggactactactga
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