Gasterosteus aculeatus (three-spined stickleback): 120817205
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Entry
120817205 CDS
T07457
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gat03016
]
120817205 (rtcb)
Enzymes [BR:
gat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120817205 (rtcb)
Transfer RNA biogenesis [BR:
gat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120817205 (rtcb)
Prokaryotic type
tRNA splicing ligases
120817205 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
120817205
NCBI-ProteinID:
XP_040029076
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All DBs
Position
IV:complement(34122044..34126362)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIGTNCWRIKKGFVPNMQVEGNFYVNDALEKLIFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLEEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFATTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagttacaacgatgagctgcagtacctggacaagatcggcaccaactgctgg
aggatcaagaagggttttgttcccaacatgcaggtcgaagggaacttctacgtgaacgac
gctctggagaagctgatctttgaggagctccgtaacgcctgtcgaggaggaggtttcggc
gggttccttcccgccatgaagcagatcgggaacgtggcggcgctgccggggatcgtgcac
aggtccatcgggctcccggacgtccactccgggtacgggttcgccatcggaaacatggcg
gccttcgacatgagcgacccggacgccgtggtgtctccagggggcgtcggcttcgacata
aactgcggcgtgcggctgctgaggaccaacctggaggagggcgacgtgcagccggtgaag
gagcagctggcccaggcgctgttcgaccacatcccggtgggcgtcggctccaagggggtc
atccccatgggggccaaggacctggaggaggccctggagatgggggtggactggtctctg
agggaggggtacgcctgggccgaggacaaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagaggggcctgccacagctgggg
accctgggggccggaaaccactacgccgagatccaggtggtggacgagatctacaacgac
tacgccgctaagaagatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagcagggggctgggccaccaggtggccacagacgcgctggttgccatggagaaggcg
atgaagagagataagatcacggtgaacgaccgccagctggcgtgcgctcgcatcacgtct
ccggaggggcaggactacctgaagggaatggccgccgccggcaactacgcatgggtcaac
cgctcgtccatgaccttcctcaccagacaggccttctccaaagtgttcgccacgaccccc
gacgacctggacatgcacgtcatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatggtggacgggaggcagaagacgctgctgatccaccgcaagggctccacccgggcc
ttccccccccaccacccgctcatccccgtggactaccagctcacaggtcagccggtgctg
atcggagggacgatggggacctgcagctacgtcctgaccgggacggagcaaggcatgacg
gagacgttcggcactacctgtcacggagcggggcgcgctctgtcccgagcgaagtcccgc
aggaacctggacttccaggacgtcctggacaagctggctgaccagggcatcgccatccgg
gtggcatcgcccaaactggtgatggaggaggctccggagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgccgggatcagcaggaaggccatcaagctgcgaccaatc
gctgtgatcaaaggctga
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