Gasterosteus aculeatus (three-spined stickleback): 120817215
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Entry
120817215 CDS
T07457
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04010
MAPK signaling pathway
gat04210
Apoptosis
gat04218
Cellular senescence
gat04620
Toll-like receptor signaling pathway
gat04621
NOD-like receptor signaling pathway
gat04622
RIG-I-like receptor signaling pathway
gat04623
Cytosolic DNA-sensing pathway
gat04625
C-type lectin receptor signaling pathway
gat04920
Adipocytokine signaling pathway
gat05132
Salmonella infection
gat05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120817215 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
120817215 (nfkb1)
04218 Cellular senescence
120817215 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
120817215 (nfkb1)
04621 NOD-like receptor signaling pathway
120817215 (nfkb1)
04622 RIG-I-like receptor signaling pathway
120817215 (nfkb1)
04623 Cytosolic DNA-sensing pathway
120817215 (nfkb1)
04625 C-type lectin receptor signaling pathway
120817215 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
120817215 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120817215 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
120817215 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120817215 (nfkb1)
Transcription factors [BR:
gat03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
120817215 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_5
Ank_3
Ank_4
Death
DMP19
DUF6156
Motif
Other DBs
NCBI-GeneID:
120817215
NCBI-ProteinID:
XP_040029093
LinkDB
All DBs
Position
IV:complement(4898375..4915421)
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AA seq
1011 aa
AA seq
DB search
MTNKYNSVYSAVEVPLRLEEEPLNWQVSERRSVIRSLLGASSLLARTGGVVTRSVSRSQR
SHSRCVRVDIMAADDHYSHPSNQIFDNIVMDSIWDFPHFPAMSQTASLRTVDGPFLQIVE
QPKQRGFRFRYGCEGPSHGGLPGASSEKTSKTYPAVKISNYQGPARVVVQLVTALTTHPQ
LHAHSLVGKQCDKGICITDLQPKDSTISFPNLGILHVTKKNVAKTLEERMVEAARLGYNC
GISIHPDIDVLQGEVRVPRELNDDQRRVISSAASLQAKEMDLSVVRLMFTAFLPNSDGGF
SRRLEPVVSEPIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEE
DDSGLTWEAMGDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVLVQLKRKSDNETSEPKPF
TYHPQIIDKEEVQRKRQKTLPNFQDFSGHGGGGGLYRGGGGGGRGPAAGGGPGSAGGGGY
FHGFTTYNYGGAAAGGGGVGGGGGFSTGYSAGLGGGGGGAAIKPASEDNQAADDKHPDDD
SGSDVGVGPAVGEGPKEGEVGGEEPEPPRDVQCSDQLQALFQYSVTGDSAFLLAAQRQLM
SVQDEDGDTGLHLAVLHSQQEALKSLTQVVSALPGEEVLNMRNHLYQSPLHLAVITQQRE
AVEALLLAGADPTLTDRHGNTPLHLASRVEGGGGMVQFLLQHREMRELLEHTNTAGLCAI
HLAVLANQLSSLRELLEGGANVEAQERSCGRTALHLATERDNVSLAGCLLLEGNAKVDSF
TFNGSTPLHIAAGRDSVKLTALLMAAGADPQRENFEPLFFREEDCCDEEKEDEGYIPGTT
PLNMATTAQVLELLNGKEYKPKCPQRSITPAQGDLASLDVEVKQQVCCALESEGCWEKLA
HSLGLGILNTAFGLSPSPAKTLLQSYEVSGGTVRELLDGLRSVGDCRALNVLEEVLRHHD
EKEEALRRPGDEEEEEEEETQTSDGSLVRDLKADIRIDSGVCDSGVELSTA
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacaagtacaatagtgtgtattccgcagttgaagttcctctccgattagaggaa
gaaccgttaaactggcaggtttctgaacggagatccgtgatacggagccttctgggcgct
agctccctgctagctaggacaggtggcgtcgtgactcgttctgtttcacgaagccaacgc
tcacacagtcgctgtgttcgtgtcgacattatggctgcggacgaccactactctcatccc
tccaaccagatttttgacaacatcgtgatggattccatctgggacttcccacatttcccc
gcaatgtctcagaccgcctccctgcggacagtggacggacccttcctgcagatcgtggag
caaccgaaacaacggggcttcaggttcaggtacggctgtgaaggtccgtctcacggaggc
ctgccaggagcctccagcgagaagacaagcaagacctaccccgccgtcaagatcagtaac
taccagggtccggcccgggtggtggtccagctggtgacggcgctgaccacccaccctcag
ctccacgcccacagtctggtgggaaagcagtgcgacaaagggatctgcatcaccgacctg
cagcccaaagactccaccatcagctttcccaacctgggcatcctccacgtgaccaagaag
aacgtggccaagacgctggaggagaggatggtggaggctgcccggctgggatataactgc
ggcatctccatccaccctgatattgacgtcctgcagggggaggtccgagtcccccgagag
ctcaacgacgaccagcgccgtgtgatcagcagcgcggcgtctcttcaggctaaagagatg
gacctcagcgtggtgcggctcatgttcacggcattcctcccgaacagcgacggaggtttc
tccagacgactcgagcccgtcgtgtcggaaccgatctacgacagcaaggctcccaacgcc
tccaacctgaagatcgtgaggatggatcggaccgctggctgcgtgagcggaggagaggag
gtctacctcctctgtgacaaggtccagaaagatgacatccaggtccggttctatgaagaa
gatgactcagggttgacctgggaggcgatgggagatttctcccctacagacgtccacaga
cagttcgccatcgtgttcaagactccaaagtatcgagaccagaacctccagaaaccgacg
tcagtgctcgtccagctaaagaggaagtctgataacgagaccagcgaacccaaacccttc
acctaccaccctcagatcatagacaaggaggaggtgcagagaaagagacagaagacgttg
ccaaacttccaggacttcagcggccacggaggaggtggaggtctgtaccgaggaggagga
ggtggtggacgaggtcctgctgcaggaggagggcctggctctgctggaggaggaggctac
tttcatggcttcaccacctacaactatggcggagcagccgcaggaggaggaggagtaggc
ggaggcggaggtttctccacaggatactcagcaggtctgggtggaggaggaggaggagca
gccatcaaacccgcctcggaggacaaccaggcagcggacgacaaacatccggatgatgac
tcggggtcggacgttggcgtaggcccagcggtgggggaggggcctaaggagggagaggtt
ggaggggaggagccagaaccacccagagatgtgcagtgcagcgatcagctgcaggccctg
ttccagtactctgtcacaggagactcagccttcctattggccgcccaacgtcagctgatg
agcgtgcaggacgaggacggagacactgggctccacctggcggtcctccacagccagcag
gaggcgctgaagagtctgactcaggtcgtctctgctctgcccggagaggaggtgctcaac
atgaggaaccatctctaccagagtcctttgcacctggccgtgatcacccagcagagggag
gcagtggaagcgctgctattagcgggtgccgaccctactctgacagatcgtcatggcaac
acgccactccacctggcgtccagggtggaaggaggaggagggatggtgcagtttctactg
cagcacagagagatgagagaacttctggaacacaccaacacagctggtctgtgtgcaatc
cacttggcggtcctggccaatcagctgtcgtctctcagggagctgctggagggcggagct
aacgtggaggctcaggagcgcagttgcggacggaccgccctccacctcgccaccgagaga
gacaacgtgtcgctggccggctgcctgctgcttgagggaaacgctaaggtggacagcttc
accttcaatggctccacccccctccacatcgctgcaggacgagactccgtcaagctgacc
gctctcctgatggctgcaggggcagaccctcagagggagaactttgagccgctcttcttc
agggaagaggactgctgcgatgaagagaaggaagatgaaggctacatcccaggaaccact
cccctcaacatggccaccaccgctcaggtgttggagcttctgaatggtaaagaatacaaa
ccaaaatgtccacaaagatccatcacacctgctcaaggcgacctggcgagtctggacgtg
gaggtgaagcagcaggtgtgttgcgccctggagagtgaaggatgttgggaaaaactggct
catagtctgggtctcgggatcctcaacactgccttcggtctgagcccttcccccgccaaa
acactgctgcagagctacgaggtttcaggagggacagtcagggaactgctggacggtctc
aggtcagttggcgactgcagagcgctgaatgtcctggaggaggtgctgcgtcaccacgac
gagaaggaggaggcgctgcgtcgccctggcgacgaggaggaagaggaggaggaggagacg
caaacgagtgacgggtctctcgttcgggacctgaaggcggacattcggattgacagcggc
gtctgtgacagcggggtggagctctccacggcgtga
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