Gasterosteus aculeatus (three-spined stickleback): 120817300
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Entry
120817300 CDS
T07457
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat02010
ABC transporters
gat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120817300 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120817300 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gat02000
]
120817300 (abca1b)
Transporters [BR:
gat02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120817300 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
120817300
NCBI-ProteinID:
XP_040029298
UniProt:
A0AAQ4Q8P3
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All DBs
Position
IV:150263..177756
Genome browser
AA seq
2288 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSPTPGESPGIVGNFNDSIISRLFLDAKKILLYSQNDK
NLDGFKELAAALHALQRSQSGFKLKHFLRDNETLSLFLLRNTSMSEDHIQQIRDADVDLE
QVLLKGFGVHLSDMCPRKGGERRLGDFVTIADQQVSMMVQKVLCEAPRTWLNQAEEHFLS
NLDFLKPVQRDLRADPEAVQLVARATNHLLDSLGSLAVELAGMKSWIDLRNEIVFLTQNA
TSSPSAMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGSQNSSEDESTSLYDNSST
PYCNSLVRNMDSNPMSRMIWQALKPLLMGKILYTPHTPATQRVIHEVNRTFQELGVFRDL
GGMWEEVRPKIWSFMENGEQMDVIRTLLKNNATARLFSAQLTHTDWTVDDVSYFLSKRVA
QGPGGALTWREVFNDTDQAIMSISRFMECVNLDKLEPVSSEERMVDQSMVLLEDKKFWAG
IVFPDVDPNATELPAKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSY
LQDVIEQGIIRAMTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
LKSVVYEKEARLKETMRIMGLNNGILWFSWFISSLIPLLVSAGLLVLLLKKGNLLPYSDP
GVVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGA
KVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPMEEDDFSLRTAIVIMYFDSFLY
GVLTWYIEGVFPGQYGIPRAWYFPFSKAYWFGEKDGKSNKGPLIQKENPEAVCIEEEPSH
LEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGRDIRTELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVKGEIEQ
ILQDTGLPHKRTSRANALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPFARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKEP
EQALSSCRNSSSTVSFTKKEEESTSVSSSDAGLGSEHESEATTIENGPAASICPVPLGPP
DATLVSGLILGHVPAARLVENLGHELTYVLPYSAAKDGAFVALFKDLDLKLLNLGISSYG
VSDTTLEEIFLKVAEDNGVDTEVPSDGTFPVRRRRRTHAFGGGDHQSCLRPLTEDDDNNC
NESDGDPECREKDWLNYTDGKGSYQVTGWSLKKQQFVALMWKRFLYARRSRKGFFAQIVL
PAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPGDPTMQRLLNSLLDSPG
LGTRCMDGHPIPEAPCTMGDEDWNVPEVPESLQQLFSSSNWTMEDPSPACFCSCDDKKKM
LPHCPAGAGGLPPPEMKLSANDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYG
GFSLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTKNNVKIW
FNNKGWHSIGAFINVMNNGILRANLPEGKDPHLYGIRAFNHPLNLTKEQLSQVALVTTSV
DVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWVANFTWDMCNYVVP
ATLVVVIFICFQQQAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFQIPSTAYVVLTSV
NILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALE
RFGENRLRSPLEWDMVGKNLFAMAVEGVVFFIITLLIQYRFFIKPRPVSTLTKLGPLGDE
DEDVARERQRIVQGLGHGDILELRQLTKVFERKQKPAVDRLCVGIPPGECFGLLGVNGAG
KTTTFKMLTGDTLVTSGEAFLAGKSILREIDSVHQHMGYCPQFDSINELLTGREHLELYA
VLRGVPEGQVCDVAEWGIRKLGLMKYAEKAAGSYSGGNMRKLSTAMSLIGAPPVVFLDEP
TTGMDPKARRALWNCIHSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHL
KNRFGDGYTIILRVGGPDSDLQPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLTHIF
SILAKNKELLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDSVRRRDVVIEVPPGASGGE
VMLKESVM
NT seq
6867 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtttccactcagctgggtctgttgctgtggaagaacttcacctacagacgaaga
cagacgctgcaacttcttgtggagatcgtctggcccctcttcatcttcttcatcctcatc
gccgttcggctgaactaccctccatacgagcaacatgagtgtcattttcccaacaaggcg
atgccgtcggccggcacgctgccttggcttcagggaatcctctgcaatgccaacaacccg
tgcttcaggagcccaacgccgggcgagtcaccgggcatagttggcaacttcaatgactcc
ataatttctcgtctatttctcgacgccaagaagattcttctgtacagtcagaacgataaa
aaccttgatgggttcaaagagcttgctgcggctctgcatgcgctgcagaggagccaatca
ggattcaagttaaagcacttcctgcgagacaatgagacgctgtctctattcctgctgaga
aacacctcgatgtctgaagaccacatccaacaaatccgagacgccgacgtggacctggaa
caggtcctactgaaaggttttggagttcacctatcagacatgtgtcccaggaaggggggc
gagcgccgtctgggggactttgtgaccatcgcggaccagcaggtgtcgatgatggtacag
aaagtcctttgtgaggcaccgcgcacctggctgaaccaggctgaggagcacttcctcagc
aacctggacttcctaaaacctgtgcagagggacttgagagccgaccccgaggccgtccaa
ctggttgccagggcgaccaaccacctcctggacagtctgggttcactggcggtcgagctg
gccggcatgaagagctggatcgaccttaggaacgagattgtgttcctgacgcagaacgcc
acctcgtcccccagcgccatgtaccaggctgtctccaggatcgtgtgcggtcacccggag
ggaggcggcctgcagatcaagtctctcaactggtacgaggacagcaactacaaggccctg
ttcgggagccagaacagcagcgaggacgagtccacgtccctctacgacaactcgtccact
ccctactgcaacagtttggtaaggaacatggactccaacccaatgtcccggatgatctgg
caggctttgaagcctctgctgatggggaagatcctgtacaccccccacactcctgccact
cagagggttatccacgaggtgaaccggaccttccaggagctcggtgtgttcagggacctg
ggcgggatgtgggaggaggtaagacccaaaatctggagcttcatggagaacggcgagcag
atggacgtgatcaggaccctgctaaagaacaacgccaccgccagattattcagcgctcag
ctgacccacaccgactggactgtggacgacgtctcctacttcctgtccaagagggttgcc
caaggccccggtggcgccctcacctggagggaggtgttcaacgacaccgaccaggccatc
atgagcatctcacgcttcatggagtgtgtgaacctggacaagttggagccggtctccagc
gaggagcgaatggtcgaccagtccatggtgttgctggaggacaagaagttctgggcaggg
atcgtgttcccggacgtcgaccccaacgccactgagctgccggccaaactcaactacaag
atccgcatggacattgacaacgttgagaggaccaataagatcaaagacgcgtactgggac
ccaggtcctcgtgccgacccttttgaggacatgcggtacatctggggtgggttctcgtac
ctgcaggacgttatagagcaaggtatcataagagcaatgacgggcaccaaggagaagacg
ggcgtctatattcagcagatgccttatccctgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgcctctcttcatgacccttgcgtggatgtactcggtggcgatcatc
ctgaagagtgttgtgtacgagaaggaggctcgcctgaaagagaccatgaggatcatggga
ttgaacaacggcatattgtggttcagctggttcattagcagtctaattcctctgctggtt
agcgccggtctgctggtgctgctgttgaagaaggggaatctgctgccctacagcgacccc
ggcgtcgtcttcctcttcctgggatctttcgccgtggtaaccatcatgcagtgcttcctc
ctcagcacagccttcgcccgcgccaaccttgccgccgcctgcggaggaatcatctacttc
accctctacctgccctatgtgctctgcgtggcctggcaggactacatcggctacggggcc
aaggtcttcgctagcctcctgtcgcccgtggcgttcggatttggctgtgagtatttcgcc
ctgtttgaggagcaaggagtcggcatccagtggaagaaccttgtttccagtccaatggag
gaggacgacttcagcctccgcacagctatcgtcatcatgtacttcgactccttcctgtac
ggagtccttacctggtacatcgagggcgtgtttccaggtcagtacgggatccctcgagcc
tggtacttccccttctctaaggcctactggtttggggagaaagatgggaagtccaacaaa
ggtccactgatccagaaggaaaacccagaagctgtgtgtatagaagaggagccgtctcac
ctggagcctggtgtctacattgagaatctggtgaaggtgtatcgccacgggaagaagctg
gctgtggacggactgacgctcggcttctacgagggacaaatcacctccttcctgggacac
aatggagcagggaagaccaccactatgtccatcctgactggcctgttccctcccacctct
ggtaccgcctacatcctcggcagagacatccggaccgagctgagtgccatcagacaaaat
cttggagtgtgtcctcaacacaacgtcctcttcagcatgctgacggtggaggagcacatc
tggttctacggccggctcaaaggcctgtcggagcagcaggtgaaaggtgagatcgagcag
attctgcaggacaccgggctgccccacaaacgcacctccagggccaatgcgctgtccgga
ggcatgcagaggaaactgtctgtggcgctggcctttgtcggggggtcaaaggttgtgatc
ctggatgaacccactgccggtgttgaccctttcgcccgtagagggatctgggatctgctg
ctgaagtaccggcagggtcggaccatcatcctgtccacacaccacatggacgaggctgat
atcttgggggaccggatcgccatcatctcccacgggaagctgtgctgcgtgggctcctct
ctgtacctgaagaaccagctggggacaggttactacctgacgctggtgaagaaggaaccc
gagcaggcgctgagctcctgcagaaactcctccagcaccgtgtccttcaccaagaaggag
gaggagagtacctcggtcagcagcagtgacgcaggactcggcagcgaacatgaaagtgag
gccaccaccatcgaaaacgggcctgcggcctccatttgccccgtccccttggggcctccc
gatgcgaccctagtctcgggtctcatcttgggccacgtcccggccgctcggctggtggag
aacctgggccacgagctgacctacgtcctgccctacagcgccgctaaggacggagccttt
gtggcacttttcaaagacctggacctcaagctgctcaacctcggcatctccagttacgga
gtgtcggacaccacactggaggagattttcctgaaagtggctgaagacaacggagtcgac
actgaagtgccttcagatggtacctttcctgtccggaggcggaggaggactcatgccttt
ggtggaggagaccatcagagctgcctcagacctttaaccgaggacgacgacaacaactgc
aacgagtcggacggtgatccagagtgcagggagaaggactggttgaactatactgatggt
aaaggctcctatcaggtgaccggctggagtctgaagaagcagcagtttgttgctctgatg
tggaaacgatttttgtatgctcggcgctccaggaagggcttcttcgctcagattgtcctc
cctgctgtgtttgtgtgcatcgctctcgtcttcagtctcattgttccaccgtttgggaaa
tacccgagtctggagctgcagccctggatgtatgaggaccaggtgaccttcatcagtgac
gatgctcctggagaccccaccatgcagaggttattgaactctctcctggactcgccgggc
ctcgggactcgctgcatggacggacatcccatcccagaagctccctgtacgatgggcgat
gaggattggaatgttcctgaagtccctgaaagcctccagcagctcttcagctcctccaac
tggaccatggaggacccgtcccccgcctgcttctgcagctgtgacgacaagaagaagatg
ctgccgcactgccccgctggagccggaggactgccaccccccgagatgaagctgagcgca
aacgatactctgcaaaacctgacaggaagaaacatctcagactacctggtgaaaacatac
gctcagatcatcggcaagagtctgaagaacaaagtttgggtgaatgagttcaggtacgga
ggcttttcattgggcgccaggagcactcaggtcctcccgccggccaatgagatcgacgat
gccattgaacgagtcagaaagatctttgagctgcagaagggagcggcagcagatcgattc
ctcgacagtctctcaggttttatcaacggtttggacacaaagaacaatgtaaagatctgg
tttaacaacaaaggctggcacagcattggagcgttcatcaacgtgatgaacaacggcatc
ctgagagcaaacctacctgaagggaaggacccacacttgtacggcatcagggccttcaac
catcctctgaacctcaccaaggaacagctgtcacaggtggctctggtaacgacctctgtg
gacgtgctggtgtccatctgtgtgatcttcgccatgtccttcgttccagctagctttgtg
gttttcctcatccaggagcgagtcagtaaagccaaacacatgcagttcatcagcggagtg
cagccgctgctctactgggtggccaacttcacctgggacatgtgtaactacgtcgtcccg
gcaacgctggtcgttgtcatcttcatctgtttccaacaacaagcctacgtttcatccact
aacctgccggtgctcgctctgctgctgctgctctatggctggtccatcactcctctgatg
tacccagcctccttcttcttccagatccccagcacggcctatgtggtcctcaccagtgtc
aacatcctcatcggcatcaacggcagcatctccaccttcgtcatggagctgttcggaaac
aacgagattgggggaattaacgacatcttgaagaatgttctcctcatctttcctcacttc
tgtctcggtcgaggactcatcgacatggtgaagaaccaggcaatggccgatgccctggag
agatttggtgagaaccgcttacgctctcctctggagtgggacatggtgggaaagaaccta
tttgcgatggccgtggagggagtcgtcttcttcatcatcaccctcctcatccagtacagg
ttcttcatcaaacccaggccagtcagtacactcactaaactgggaccactgggggacgag
gacgaggacgtagcccgagagaggcagaggattgtccagggtctgggacatggggacatc
ctagagctccgtcagctcaccaaggtgtttgaaaggaaacagaagccggctgtggatcga
ctttgtgtcgggattcctcctggagagtgcttcgggctgcttggggttaatggtgctggg
aagacgaccacctttaagatgctgactggagacacactggtgaccagtggagaggctttc
ttggctgggaagagcatcctgagggagatcgactccgtccaccagcacatggggtactgt
cctcagtttgactccatcaacgagctgctgacaggaagagagcacctggagctctacgcc
gtcctcaggggggtccccgagggacaagtctgtgatgtggcagagtggggcatcaggaag
ttgggtctgatgaagtacgctgagaaagcagcaggaagctacagcggaggaaacatgagg
aagctgtccacggccatgtctctgatcggagcgccgcccgtcgtcttcctggacgagccc
acaaccggcatggaccccaaagcccgccgggccctgtggaactgcatccacagcatcatc
aaggagggacgctccgtggtcctcacctcccacagcatggaggagtgtgaggctctgtgt
accaggatggccatcatggtaaacgggaggttcagatgtctcggcagcgttcagcacctg
aagaacaggtttggtgatgggtacaccatcatcctgcgggtgggggggccggacagtgac
cttcagcccgtcatgaagttcattgagagtgagttgagcggcagcacgctgaaggagaag
cacaggaacatgctgcagtaccagcttccatcttctctcacctccctcacccacatcttc
tccatcctcgccaagaacaaggagctgctgaggattgaggattactccgtcacccagacc
accctggatcaggtgtttgtgaacttcgccaaggaccagagtgacgactaccactccaaa
gactcggtgcggcgccgagacgtcgtcatcgaggtccccccgggagcttctgggggggag
gtcatgctaaaggagagcgtcatgtga
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integrated database retrieval system
