Gasterosteus aculeatus (three-spined stickleback): 120817321
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Entry
120817321 CDS
T07457
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03020
RNA polymerase
gat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120817321 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
120817321 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120817321 (polr2b)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120817321 (polr2b)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120817321 (polr2b)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120817321 (polr2b)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120817321 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120817321
NCBI-ProteinID:
XP_040029346
LinkDB
All DBs
Position
IV:complement(48445..60438)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPQYEEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagatcctcagtacgaggaggacgatgatgaaatcactccggat
ttgtggcaggaagcttgctggatcgtcattagctcttactttgatgagaagggtctggta
agacagcagctggactcttttgatgagttcatccagatgtcggttcagaggattgtggag
gacgcaccaccaatcgacctgcaggctgaagcgcagcacacctcaggagaggtggaggag
ccgcctcgttacctgctgaagtttgagcagatttacctgtcaaagcccacccactgggag
agagacggagctccgtctcccatgatgcccaatgaagcccgactgagaaaccttacgtac
tctgccccgctttatgttgacatcacaaagactatcataaaggagggcgaggaccagcta
ctaactcagcaccagaagaccttcattggtaaaattcccatcatgcttcgctccacctac
tgtttgctgagcggcctaacggaccgagacctgtgtgagcttaacgagtgtccgcttgac
cccggaggttatttcatcatcaacggctctgaaaaggtgttgattgctcaggaaaagatg
gccaccaacacggtgtatgtgtttgccaagaaagactcaaagtacgcctacacgggcgag
tgtcggtcctgtttggagaactcgtcccgtcccaccagcaccatctgggtcagcatgatg
gcccgaggaggacagggagtgaagaagagcgccatcggtcagagaattgtctccacgctg
ccgtacatcagacaggaagttcccatcatcatcgtatttcgagcgctggggttcgtgtcg
gacagagacatcctggaacacatcatctacgactttgacgacccagagatgatggagatg
gtgaagccatctttggacgaagcgtttgtgatccaggagcagaatgttgctttaaacttc
atcggttccagaggagcgaaacccggtgtgacgaaagaaagaagaataaaatatgcaaaa
gaagttctgcagaaggaaatgctgccacacgtcggagtcagcgacttctgcgagaccaag
aaggcctacttcctagggtatatggtccacaggctgctgctggctgctcttggcagaaga
gagctggacgaccgagatcactacggcaacaagagattggacctggcggggccgctgctg
gccttcctgtttagaggcatgtttaagaacctgttgaaggagatcaggatttacgctcag
aagttcatcgacagaggaaaagacttcaatctggagttggccattaaaaccagaatcatc
tcagacggcctgaagtactcacttgccactgggaactggggcgatgtgaagaaagctcac
caggcccgagccggagtgtcacaggtgttgaaccgtctgaccttcgcctccactctgtct
cacctccgccgactcaactctcccatcggcagagacggaaaactggcaaaaccccgacag
ctccacaacacgctgtgggggatggtgtgtccggccgagacgcccgagggtcacgccgtg
ggactggtgaagaacttggccctcatggcctacatctctgtgggctctcagccgtctccc
atcctggagtttctggaggagtggagtatggagaacttggaggaaatctcacccgctgcc
attgcagatgccactaagatatttgtgaacggatgctgggtcggaattcacaaagatcct
gaacagctgatgaacacactgaggaaactccgtcgacagatggacatcatcgtatccgag
gtatcgatgatcagagacatcagggaacgtgagatcagaatctacacggacgcaggaagg
atatgtcgacctcttctgatcgtagagaagcagaaactactgctgaagaggcgccacatt
gaccagctaaaggagcgggagtacaacaactacagctggcaggacctggtggcgagcggt
gtggtggagtacatcgacactctagaggaggagacagtgatgctcgctatgacccctgat
gacctccaggagaagggcgtggcctactgctccacttatacgcactgtgagatccacccg
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtccccc
aggaacacataccagtctgctatgggaaaacaggccatgggagtctacatcaccaacttc
catgtccggatggacacgttggctcacgtgttgtactaccctcagaaaccactagtcacc
acccggtcgatggagtacctgcgcttcagagagctgcctgcagggatcaactccattgtg
gcgatcgcttcgtacacaggatacaaccaggaagactcggtgatcatgaaccggtctgcc
gtcgaccgaggcttcttcaggtcagttttctatcgatcctacaaagagcaggagtctaag
aagggttttgatcaggaggagatctttgagaagccgacacgtgaaacatgtcaaggtatg
agacacgccatctacgaaaagcttgatgatgacggcctcatcgctcccggcgtgcgtgtc
tccggcgaggacgtgatcatcggtaagaccgtcaccctgccggagaccgacgacgagctg
gacagcaccaaccgccgctacaccaagagggactgcagcaccttcctgagaacaagtgag
actggcattgtggaccaggtgatggtgactctgaaccaggagggctacaagttctgcaag
atcagggttcgctcagtgcggattcctcagattggagacaagttcgccagccgccacgga
caaaaaggaacctgtggaattcagtacagacaggaggacatgccgttcacctgtgaggga
atcacaccagatatcatcatcaaccctcatgccatcccgtccagaatgacagttggccat
ctgattgagtgtctgcaaggcaaggtttccgcaaacaaaggtgagattggtgatgcaacg
ccgtttaatgacgctgtcaatgtgcagaaagtatccaacctgctgtctgagtatggatac
cacctgagaggaaatgaggttctgtataatgggttcacggggaggaagctgacgtctcag
atcttcatcggtccgacttattatcaacgcctgaaacacatggtggatgataaaatccac
tcgagggcccgtggaccggttcagatcctcaacagacaacccatggagggccggtcacgt
gatggtggcctgcgcttcggggagatggagcgtgactgtcagattgcacacggagcggct
cagttcctgaaggagcgtctgtttgaagcttctgatccgtatcaggttcatgtgtgtaac
ctgtgtggactgatggccatcgccaacacgaggacacacacatatgagtgtcgaggctgc
cgcaacaagacccagatctctctcgttcggatgccgtacgcctgtaagcttcttttccag
gagttgatgtcgatgagcattgctcctcgtatgatgacgtcatag
DBGET
integrated database retrieval system
