Gasterosteus aculeatus (three-spined stickleback): 120817408
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Entry
120817408 CDS
T07457
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120817408 (pcdh19)
Cell adhesion molecules [BR:
gat04515
]
Cadherins
Protocadherins
120817408 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Motif
Other DBs
NCBI-GeneID:
120817408
NCBI-ProteinID:
XP_040029549
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All DBs
Position
IV:6868568..6920596
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AA seq
1097 aa
AA seq
DB search
MQTKEMELIQFVAVFVLNWVAAEAVINLKYGINEEMKPGSVIGNVTKDALKQGFQIALQP
PYLRVISNSEPRWVELSPAGILTTQMKIDRDVVCRQNPKCIISLEVMSNMEICVIKVEIE
DLNDNAPRFPTSHIDIEISENASPGTRFPLEGASDPDSGTFGVQSYSITPNELFGLDIKT
RGDGSKIAELVVQKSLDRETQSHYTYEISAEDGGDPPKIGAVQLNIKVIDSNDNNPVFDV
PVYTVNVMENSPINTLVIDLNATDPDEGTNGEVVYSFNSYVSENTRDAFKIDPGTGIITV
NGVLDYEAANIYEIDVQAKDLGPNSIPAHCKVTVNVMDTNDNPPVINLLSLNTEMVEVSE
NAQRGYVIALVRVSDKDSGANGKVQCRLQGNVPFRLQEYESFSTILVDGRLDREQKDTYN
LTIQAEDSGMPPLRATKSLVVKVTDENDNPPHFLKPHYQEMVMENNLPGSCLLAVSAEDP
DLGMNGTVSYSIVPGEIKHMDVNTYVSINPSGKIYSMRSFDHEYTRTFDFKVLARDNGNP
SLSSNATVRIVVLDVNDNTPVMTNPPLVNGTAEVSIPRNAGVGYMVTQVKADDYDEGENG
RLTYTISEGDRAFFEIDQVNGEVRSTRMFGENAKSTYEITVVARDHGKPSLSASAYIVVY
LSPDLNAQEPIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSFFYLR
RVAEYSYGNQKKSSKKKKLNKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQSLP
LGCRRSESTFLNVENQNSRNAAPNHGYQHPFTGQAHQQPDLIINGMPLPETENYSIDSSY
VNSRAHLIKRPPCSTSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGHYVDTAVNDVLNMT
IPPNVCQLPDQDPSEGFHCQDECRILGHSDRCWMPRHSIPSRVKSPEHGRNVIALSIEAT
TVDVPHYEDGTIKRTFATFGKDGPEDVERGELKGKRTQESQVCSPKANGGAVREAGNGRE
AASPITSPVHLKSPPAKPSSAYNTLKCRDAERIANHSLLRQPEGKDSEPAVREINTLLHD
GRDKESPSSKRLKDIVL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaaggagatggaattaattcaattcgttgctgtgttcgtcttaaattgggtg
gcggctgaggctgtcatcaacctaaagtatggaataaacgaggagatgaagcccgggtca
gtaattggaaacgtgacaaaggacgcgctaaagcaaggatttcagattgcgctgcagccc
ccgtacttgagggttatttccaattcagaaccacggtgggtggaactcagtcccgccgga
atccttacaacccaaatgaaaatagatcgggatgtggtttgtcgacagaaccctaagtgc
attatttccctagaagtaatgtcaaacatggagatctgtgtcatcaaggtggaaattgag
gatttgaacgataacgcacccaggttcccaacgagccacatcgacattgaaatctccgag
aatgcctcccctggtaccaggtttcccctagagggggcaagcgatccggactctgggacc
tttggagtgcaatcatattccatcactccgaatgagcttttcggactagacataaagacc
agaggggatgggtctaaaattgctgagcttgttgtgcaaaaatcattggacagggagacc
cagtcccactatacgtatgaaattagcgcagaagatggaggcgaccctcctaaaataggc
gcggtccagttaaatatcaaagtaattgattctaatgacaacaacccagtctttgacgtg
ccagtgtatactgttaatgtcatggaaaattcccccattaatacgttagtcattgacttg
aatgcaacagatcccgacgagggcactaatggcgaggtagtgtactcgttcaacagttac
gtcagcgagaataccagggatgcgttcaaaattgacccgggaaccgggatcatcaccgtg
aacggtgtcttggattacgaagcagcgaacatatacgagatcgacgtccaggccaaagat
ttaggtcccaactctatcccagctcactgcaaagtcacagtgaatgtgatggacacaaac
gataatccacctgtcataaatctgctctcactgaacacagagatggtggaagttagtgaa
aacgcgcagcgtggttatgtcatcgcgctggtgagggtttccgataaggattccggggcc
aacggcaaagtgcagtgcaggctgcagggcaacgttccgttcagacttcaagaatatgag
agtttctccaccatacttgttgatggcaggctggaccgagagcagaaggacacatacaac
ctgaccatccaagcggaagatagcggtatgcctcctctacgcgcgacaaagtctttggta
gtcaaagtcacagacgaaaacgacaaccctccccacttcctcaaaccacactatcaggag
atggtgatggaaaacaacctgcccggatcatgtctgctagcggtgtcggcagaggacccg
gacctggggatgaatggcacagtctcctactccattgtccccggagagattaagcacatg
gatgtaaacacgtatgtcagcattaacccatcaggcaaaatttactccatgagatcattc
gaccacgaatacactagaacttttgatttcaaagtattggccagagacaacggtaacccg
tctctatccagtaacgccacggtgcgtatcgtcgtcctggatgtcaacgacaacacacct
gtcatgacgaaccctccgctcgttaatggcacagcggaggtttccatccccagaaacgct
ggggtgggctacatggtgacccaagtgaaagcagacgactatgacgagggagaaaacggc
cggctgacctacaccatctccgagggcgacagggcttttttcgagatcgaccaagtaaac
ggagaggtgcgttccaccaggatgtttggggaaaacgccaagtccacttacgagatcacc
gtggtggcgagggatcacggcaagccctccctttctgcctcggcctacatcgtagtgtac
ctctcaccagacctgaacgcacaggagcctatcggacctgtcaacctgtccctcatcttc
atcatcgctctgggctccatcgcagccatcctatttgtcactatgatttttgtggcggtc
aagtgcaagagggataacaaggagatccggacgtacaactgcagtttcttctacttgcgc
agggtggcggagtactcatacggaaaccagaagaagtccagcaagaagaagaagctgaac
aagaacgacatccgcctggtgccacgtgacgtcgaggagacagacaagatgaatgtggtg
agttgctcgtctctcacctcctcgctcaactacttcgactaccaccagcagagcttgccg
ctgggctgcaggcgctccgagagcaccttcctcaacgtggagaaccagaactcacgcaat
gcagctccgaaccacggctatcagcacccgttcactgggcaggcccaccagcagccagac
ctcatcatcaacggcatgccactgccagagacggagaattactccattgactccagttac
gtgaacagcagagcccacctcattaaaaggcccccatgtagcacatcgacattcaaggac
ctggaggggaacagtctgaaggacagcggccacgaggagagcgaccagaccgacagtgaa
catgacgtccagagaggacactatgttgacacggctgtcaacgacgtgctgaacatgact
atcccccccaatgtttgccagctgccagaccaagatcccagcgaaggctttcactgccag
gacgagtgtcgcatcctcggccactctgaccgctgctggatgcctcgccactccatcccc
tcgcgcgtcaagtcacccgagcacggccgcaatgtcatcgccttgtccatcgaggccacc
acggtggacgtgccccactacgaggacggcaccatcaagaggacttttgccaccttcggt
aaggacgggcccgaggacgtggagcggggagagttaaaggggaagcggactcaggagtct
caggtgtgcagcccgaaggccaacggaggggccgtccgcgaagccggcaacgggcgcgag
gcagccagccccatcacttcccccgtgcacctgaagagcccaccggccaagccgtcgtcc
gcctacaacacgctgaaatgccgcgacgcagagcggatcgccaaccacagcctgctgcgg
cagcccgaggggaaggacagtgagccagctgtcagggagatcaacacgcttctccacgac
ggccgagacaaggagtccccaagcagcaagcgcctgaaggacattgtgctctag
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