Gasterosteus aculeatus (three-spined stickleback): 120817522
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Entry
120817522 CDS
T07457
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
120817522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120817522
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120817522
Spliceosome [BR:
gat03041
]
Complex C
Other components
Complex C specific factors
120817522
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Utp25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120817522
NCBI-ProteinID:
XP_040029774
UniProt:
G3Q2Z1
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All DBs
Position
IV:12954566..12960160
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AA seq
614 aa
AA seq
DB search
MENENGSKKRSHEEDERSGSGGSEADDYVPYIPVKIRKQQMLNKMLRLRGKAVDDDQKDS
GEDQKDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPSTRHERVRKKFHILVDGDGIPPPIKSFREMKL
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTHPIIMFSLEQEK
RLPFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIGGMSVKDQME
VVNHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDL
KALLVEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaaatggatccaaaaagagatctcatgaggaggatgaaaggtctggctca
ggaggatcagaggctgacgattatgttccatacattcctgtcaaaataaggaaacaacaa
atgctgaacaagatgttacgtctgcgaggaaaggcggtggacgacgaccagaaagacagt
ggggaggatcagaaggatgaggatgagggtctcggtccacgctccaatgttagtcttctc
gaccagcatcagcaccttaaggaaaaagcagaagcccgtaaggagtccgccaaggagaag
cagctgaaagaggaagagaaaattctcgagagcgtcgcagagggcagagctctgatgtct
gtgaaggaaatggccaaaggaatcatatatgatgatcccataaaaaccagctggaaggca
ccgcgctacatcctgaacatgccaagcaccagacatgagcgcgtcaggaagaagtttcac
atcctcgtcgatggggacggcatccctcctccaatcaaaagtttcagggagatgaagctt
ccaccagcaattctaaaaggtttgaaaaagaagggaattgttcatcctacaccaattcaa
attcaaggaattcccacagttctgtcaggtcgagacatgattgggatagccttcactggt
tctggaaagactttggtcttcactcatcccatcatcatgttttcactggagcaggagaaa
cgactgcctttctttaagagagagggaccgtatggactcatcatctgtccctcacgagag
ttggcgaggcagactcacggcatcatcgagtactactgcaagctgctggaggaggaagga
gctcctcagctacgcactgccctctgcatcggaggaatgtctgtcaaggaccagatggaa
gtagtaaatcatggtgtccacatgatggttgctacacccggccgactgatggacttgctg
cagaagaagatggtgagtctggacatctgccgctacttggccctggatgaggccgatagg
atgattgacatgggctttgaggaagacatcagaactatcttctcctatttcaagggacaa
aggcaaaccctgcttttcagcgccactatgcctaaaaaaatccagaactttgccaagagt
gcactggttaaacccatcactatcaacgtgggccgggctggagctgccagcttggatgtc
atccaggaagtggaatatgtcaaagaggaggccaagatggtgtacctgctggagtgtctc
cagaaaacaccgcctcctgtgctgatatttgctgagaagaaggccgacgtagatgccatc
cacgagtatctgctgctaaaaggagtagaggcggtggccatccatggaggaaaagatcag
gaggaaagaacaaaagccatagaggcattcaaagaaggaaagaaagatgtcttggttgcc
acagatgtggcctccaagggtcttgatttcccagctatccagcacgtagtgaattacgac
atgcctgaggagatagaaaactatgtccacagaattggaagaactggaagatcaggcaag
accggcattgccacaacgttcatcaataaaggctgcgacgagtcagtgttgatggacctt
aaagctctgctagttgaggccaagcagaaggttcctccggtcctccaggttctccagaca
ggagacgagaccatgctggacatcggaggagagaggggctgcacgttctgcggcggtctg
ggtcatcgtattaccgactgtcccaagttggaggccatgcagaccaagcaggtcaccaac
atcgggcgaaaagactacctggctcatagctcaatggacttctaa
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