Gasterosteus aculeatus (three-spined stickleback): 120817661
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Entry
120817661 CDS
T07457
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120817661
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gat01009
]
120817661
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120817661
Protein phosphatases and associated proteins [BR:
gat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120817661
Cell adhesion molecules [BR:
gat04515
]
Cadherins
Protocadherins
120817661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
120817661
NCBI-ProteinID:
XP_040030023
UniProt:
A0AAQ4P6E1
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All DBs
Position
IV:476020..531340
Genome browser
AA seq
1098 aa
AA seq
DB search
MAAPRRALLLYLALVLRASCGAAPSDILYRVAEEQPPNTLIGSLASDRGLPDTGHLYKLE
VGSPYLRVDGKTGDIYTTEIPLDRETLKDCRNLLEGDECFLEFEVSITDMVKGPGSGPRL
IDGRIEVLDINDNTPQFSSPILSLSIPENTHVGALFSIPMATDRDSGGNGVAEYSLTAGP
DADRLFSLQVAVDQDEKLPQLVVMGNLDRERKDSYDLNIRVVDGGRPARASSALLRVTVT
DQNDNAPKFERSHYEAELPENSPQGHSVLQVRANDADTGANGEIDYSLHQASEAVQRLLR
IDRSTGVIYVKGLVDREEESFLKFFVVAKDRGPNSKSSKVLVTINVRDLNDNAPAIEIRG
IGLVTHQDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASESAND
RKRKYFLQTTTPLDYERVRDYRIEIVAVDSGNPALSSSNSLKVQVTDMNDNAPVFSPTLL
ELDFAEGNQPGDRVLGVTASDADSGTNAELAYSIVEPAASRLFEIEADTGEIRVRNLLDR
EERERYEFRVAAADKGVPCKTGTATVVINVLDRNDNDPKFMLSGYSFSVIENMAPLNPVG
VVTVTDADKGENARVRLYVEPDNGKFVIQNGTGTILSSISFDREKESTYTFSLRAVDAGD
PPRSSFVGVTINVLDENDNAPYVTKPANSSYTYMSPVTPLDTSVEMVEAEDIDSGPNAEL
VYAITGGNPYDLFYISPTSGEIMLVQEFTSKHNGLHRLVVKVSDKGKPPRHTTALVHVFV
NDTKSNVSLIEALVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILVIVAVVV
LRHRLQKDTKSGYQAGKKESKDLYAPKQGPKSSKGKKTKKGKAPKPAKPLEEEAEAGLQK
SLNFNLINEDVTDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQ
DLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSSKQPPHRRVTFSTANQAQDPAGRVP
AQLLRQRPGGVGDPQLQVLVGGAPHRAPALPEDTTRGPRPTAALAKMEHPENGKTRWSGV
QRRTGERGGTKKADLRQN
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccagacgggccctcctgctctacctggcgctggtcctgcgggcctcctgc
ggcgcggcgccctccgacatcctgtaccgggtcgccgaggagcagcctcccaacacgctg
atcggcagcctggcgtcggaccgcggcctccctgacaccggccacctctacaagctggag
gtgggctcgccatacctgcgcgtggacggcaagaccggggacatctacaccacggagatc
cccttggaccgcgagacgctgaaggactgccgcaacctgctggagggcgacgagtgcttc
ctggagttcgaggtgtccatcacggacatggtgaaggggccgggctcgggcccccggctc
atcgacggccgcatcgaggtgctggacatcaacgacaacacgccgcagttttcctcgccc
atcctctcgctgtccatccccgagaacacacacgtgggcgccctcttctccatccccatg
gcgaccgaccgggactccggcggcaacggcgtggcggagtactcgctgacggcggggcca
gacgccgaccggctcttctccctgcaggtggcggtggaccaggacgagaagctgccgcag
ctggtcgtcatgggcaacctggaccgcgagaggaaggactcgtacgacttgaacatccgg
gttgtggacggcgggaggccggcgagggcgagcagcgccctgctgagggtcaccgtcacc
gaccagaacgacaacgcgccgaagttcgagaggagccactacgaggccgagctgcccgaa
aacagcccgcagggacactccgtgctgcaggtccgcgccaacgacgcggacaccggcgcc
aacggggagatcgactacagcctccatcaggcgtctgaggccgtgcagaggctcctgcgc
attgaccgctctaccggcgtcatctacgtcaagggactagtggaccgcgaggaggaaagc
ttcctcaagttcttcgtggtggccaaagaccgcgggcccaactccaagagctccaaggtc
ctagtgaccatcaacgtccgggacctgaacgacaacgcgccagccatcgagatccgtggc
atcggcctggtgacgcaccaggacggcgtggccaacatctccgaggacatgcccatcggc
acgccggtggcgctggtgcaggtgtcggaccgcgacgagggggagaatgcggttgtgacg
tgcgtggtcgccggcgacgtcccgttccagctgcgccctgccagcgagtcggccaatgac
cgcaagaggaagtacttcctgcagaccaccaccccgctggattatgagcgcgtgcgggat
tacaggatcgagattgtggcggtggactccggcaacccggcgctgtccagctccaactcc
ctgaaggtgcaggtgacagacatgaacgacaacgcgcccgtcttctcccccacgctgctg
gagttggacttcgccgagggcaaccagccgggcgatcgcgtgctgggcgtcacggcgtca
gatgcggacagtggcacaaacgccgagctggcctacagcatcgtggagccggcggcctcc
aggctgtttgagatcgaggccgacaccggggagatccgcgtgaggaacctgctggatcgg
gaggagcgggagcgctacgagttccgtgtggcggcggcagacaagggcgttccctgcaag
accggcaccgccaccgtggtgatcaacgtcctggaccgcaacgacaacgaccccaagttc
atgctgagtggctacagcttctccgtcatcgagaacatggcccccctcaaccctgtcggg
gtggtgacggtcaccgatgcagacaagggcgagaacgcccgggtgaggctgtacgtggag
cccgacaacgggaagtttgtgatccagaacggcacaggcaccatcctctccagcatctcc
ttcgaccgcgagaaggaaagcacctacaccttcagccttagggccgtggacgccggcgac
ccgccccgctcatcctttgtgggcgtgaccattaacgtgctggacgagaacgacaacgcc
ccctacgtcaccaagccggccaactcctcatacacctacatgtccccagtcaccccgctg
gacaccagcgtggagatggtggaggccgaggacatcgactccgggcctaacgccgagctg
gtctacgccatcacgggggggaacccgtacgacctgttctatatctcgcccaccagtggg
gaaatcatgctggtgcaagagttcaccagcaagcacaatggcctgcaccgcctggtggtg
aaggtcagcgacaagggcaaaccccctcgccacaccaccgccctggtgcatgtgtttgtc
aacgacaccaagtccaacgtgtccctcatcgaggcgctggtggggcacagcctctacacc
cctctggaccgggacatcgccggggaccccaactacgccctcgcccagcgcagcaacatc
ctgtacggcagcctggcgggcatcgccggcgtgatcctcgtcatcgtggctgtggtagtc
ctcaggcaccggctgcagaaggacaccaagagcggctaccaggccggaaagaaggagagc
aaggacttgtacgcccccaagcagggtcccaaaagcagcaaagggaagaagaccaagaag
ggcaaggctcccaaaccggccaagccactggaggaggaagcggaggccggcctgcagaag
agcctcaattttaacctcatcaacgaggacgtcaccgacagcccccggatccacctgccc
ctcaactaccctccggggagccccgaccttgggcgccactaccgctccaactccccgctg
ccctccatccagctgcagccgcagtcaccctccgcctccaagaagcaccaggctgtccag
gacctgccggccaccaacaccttcgtggggacgggtgacaacaactccacgggctccgac
caatactcggattacagctacaaggccaacccgcccaaatacagcagcaaacagcccccc
caccgccgcgtgaccttctccacggccaatcaggcgcaggaccctgcaggacgcgtccca
gcacagctactacgacagcggcctggaggagtcggagacccccagctccaagtcctcgtc
gggggggccccgcatcgggcccctgccctgccggaggacactacgagaggaccacgcccg
acggcagcattggcgaagatggagcacccggagaacggtaagaccaggtggagcggcgtc
cagcggcgaaccggagagaggggcgggactaaaaaggccgacttaagacaaaactaa
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