Gasterosteus aculeatus (three-spined stickleback): 120817739
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Entry
120817739 CDS
T07457
Symbol
utp20
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gat03009
]
120817739 (utp20)
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120817739 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
ParB
FANCI_S2
Motif
Other DBs
NCBI-GeneID:
120817739
NCBI-ProteinID:
XP_040030157
LinkDB
All DBs
Position
IV:complement(25028410..25046613)
Genome browser
AA seq
2826 aa
AA seq
DB search
MKIKSKSSYHKSENTYRFLTFAERLSRVKIDVIHRIDRTGSYAEEVETYFSEGLTKWRDL
NLTEHFTTFLKEVSSHSQSFNMLVFHQKAIVASLKTHLAVKNSLAYEPLLDLVVQLARDL
QADFYPHFPDFFLLIASLLETNDTEVLEWAFTCLSYLYKYLWRLMVKDMTNIYSLYSRLL
EHKKEHIRKFAAESFSFLMRKVPDIDALLSLVFSDLQQHPDKAEGAGQLLFEMCKGVQHM
FHSCVGNALPLALRKLGPVTNGGVPLPWDTVRDALDHMAQAAANHVYREHFLVFWESLQV
SAVELQGVVEAKGEEAEQATEQLERLLFILHTLVSHKNGAKITKSADVCQMVLRLIQSPS
LSASCYRLLLQITSSLLLGENVTLQQALTQETVQKVFGSTVGEDLILEFTKEMFTMKQFE
QLFLPCLLRFTAGLFASADPLSRNCGLDILVSLILAKAPPPTDGSMAFETYPLLFTGQTM
GVFSTKSSSLTSEQPPVPELVLSLIQFPDGQQQSITDLSLPWAALVLLPHLRPIAPASVV
PAVTAFLNHLLCEIEAERLGKAGLFVARQALSCLLTLDGSAQLLSLFTVDKINSILRNFP
TDLSALVLGDLYYTRLSLSGVSEHLSHNALLELHQMLHANLSSNISKIRLLTLRILSQFE
AELPPQTEGEESVEVQPVFALCLQAELVPATVQDCREKLLHLRKLRHDLVQRSLPQGPPG
TFQQVPLRYLIAMLFVNFRPLWEGVIELIVSHARGMDNKDFWRVFHEHLEMVAGIAEKEL
QECCEEDEEEEDEEEEEMGVEGEPGCDVIESGDMGVLFLEQLNLTSNPNERTDFPNFRGL
LWRCMTQFPDRVEPRSRELSPLLLRFIRNEFYHADLQVAPTQDLRKVDRAPLEESRMTVG
EDEEGGDDEEEPEEGGRREKKGPPKRAAAKELIAHLKVFAKFTNPRSLYMESSLGELYNQ
LLCHQNHQIQRVALECVLTYKDPNIVPYKENLERLLDDKHFKDEIIQFNITEETGVVEAS
HRAILIPLLMRILFGRMRSKAGSKFQGKSSATTRSSIILRFLGGCQQQELGIFIDLLLEP
ICYHSEGSCLEAVKKAISKTDVGAVLPLGRQHSLLNIIHVVIQKLGHLIHLHLPKVLQIL
LCVTASVSVVLDHRDQLRPGCIGPLKHLRQLGILRIQDFFDGFDSYSFSADELDAVFQAV
VWPQVCRLPTESPYSPSPLLKLIHVWCKNARYFPLLAKERPNQPEYNILLNVFALLSAKN
ASPVTIKAVMDIAESLATTEDFVASDVETELSVNGSVFPEPKEGSFITADSLTQGSRVLL
PHVSTLLQYLSRVVRNTGRLKQKKFKAHVAKELNILSKVSRFVSDKEQSTVLIRLLLPYL
LKGLNSQEITIDILATLQNLLRQCVKPSAFLRPLCKLFAVINNQLPRQALNNVFQTLSDL
EPNLLYITELATKLNAFDSRHLDEIHFDVRLPAFQDATRRVKEMATLDLDYIYIIMYNCF
HTFELGDMSLGDNATTCLSAVITQLAAVGAGGQLYQDIVQNTILDAVHRGLQSKTDSVQH
EYTTVLACLVKTFPSKKEFRDLVQLTNYTDPESDFFEHMKHIQIHRRARALRRLAKQLTE
GQVVMTPRSLQNYIMPYAMTALLDEKMLKHDNMILASVAIVGAVCRRLTWSKYLHYLKHF
VYVLQTGQAEQKLAANLLVTVLDAFHFDHETLSREMEAAKAREAGGVAEAVEEPELGNNE
EEEAMQVDGNAAPADVPMDMDTPGGEKQVAPKKDAASEAKVPATPATLAASSGLPQSAGE
LESLISTIHQTVTNTVLPRLQKCLTAKIKRDDEHNAVRSKDVKDEETARIPIAFAMVKLM
QTLPPHVMEANLPGILIKVCVVLRNRFQEVREVARGTLVKIIETLGYKYLQYLLKEMHGT
LVKGYQVHVLTFTVHRLLTVLSPTLKSGDLDPCMNMLIDIFNNELFGPVAEEKEVKGIVS
KLMEARHSKSMDSYQLLAQFCSRESVTKLLLPLKELLENSSSLKVCNRVAAVLRQVVLGL
LVNEGMTSQDILLLCHGLVSQSLPLLTKRDREKASAKPPPDPKLPPPSCLLLLPTPKRGS
RKAPVSSRTNLHILVGAGLKLLHLSLKKSKVKSSDASVLEMLDPFVLLLLDCLESMHVKV
ITEALLAFTCMLKLPLPAVEHNASQLAKPLFVLLKDYSMAGAGHGENFLLVQNCFKAITI
MVKNVKNNQISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILFRKLIVPEMEEVLKKVA
KLSVTSSNMMVRVRCRQMFLKYLLDYPLGKKLRGHLDFVVAQLQYEHDMGRESVLEMLAY
IFQTFPQRLLFQYNGLFFAPLALVVLNDDSARCKKMAAMAIKALLAKLDLNHHNALFSLV
TTWLNAPKANLRRLGAQICGLYVEVEEEKFTRRTDDLLPLLEKEIHPENYEDIYEEEDER
GADRLLFSFLTLITKLCQHCGLLELSKPHDTLCRIWGHIEAHLRYPHCWVWLTASQLFGQ
LFAAHPAEQLVALWRGEGDASPRPAATEFITSSLDKKMRELALSFCHQLQSKFLDVASGE
QVIKNLLFVGKVIYLLSPESDVTPEEEEEELRENIVEEEEEEEEEELTENVVDEEGAEKE
ADGGEEEDDAADKDDRPPSLLWLIKKLSLMTKREAAHTPKVPLKRTCVFKFIGAMAIDLG
KDRLGPYLTTLITPLYRELDSTYADQDPTLKNLAQELIELLKKQVGLERFSLAFSAVQKE
FSQRRVARKQHRAMLAVSNPEMAAKKKLKKNKNKIEAKKRKIEFLRPGYKAKRSRTHALR
DLAIVK
NT seq
8481 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaatccaagtcatcgtatcacaaatctgagaacacctacaggtttctcact
tttgccgaaagactttcccgtgtcaaaattgatgtcatccatcgtattgacaggactgga
tcttatgcagaggaagtagaaacctatttctctgaaggactgacaaaatggagagacctc
aacttgaccgagcatttcactacatttttgaaagaggtttccagccacagccagtcattc
aacatgctggttttccaccagaaggcgattgtggcgagcctaaaaactcacctggctgtc
aaaaacagtttggcctacgagccgttgctggaccttgtggtgcagctggccagagacctg
caggcggacttctacccccacttccccgacttcttcctcctgatcgcctcgctgcttgaa
accaatgacacggaggtcctggagtgggctttcacgtgtctctcctacctctacaagtac
ctgtggaggctcatggtgaaggacatgaccaacatctacagtttatacagcaggttgttg
gagcacaagaaagagcacatccgcaagtttgcagcagagagcttctcttttttgatgaga
aaggttccggatattgatgccctgctgagtctcgtgttctcagacctgcagcagcacccc
gacaaggcggagggagcaggccagctgctgtttgagatgtgcaaaggagtccaacatatg
ttccactcctgtgtgggaaatgctctccctctagctttgcgtaagctcggacccgtaacc
aacggcggcgtacctctgccgtgggacaccgttagggatgctctggatcacatggcccag
gctgccgccaatcacgtctacagagaacacttcctggttttttgggagtccttacaggtc
agcgcggtggagcttcagggtgttgtggaggcgaaaggagaggaggcggagcaggcaaca
gagcagctggagaggctgctgtttattctccacaccctggtgtcccacaagaatggagcg
aaaatcaccaagtcggcagacgtctgccagatggtgttgaggctgattcagagcccgtct
ctgtcggcgtcttgttaccgtctgctcctccagatcacctcctccctactcctcggggag
aacgtcaccctgcaacaagcgctcacccaggagactgttcaaaaggtgtttggcagcaca
gtgggggaagatctgatactggagttcaccaaggagatgttcacaatgaaacaatttgaa
cagctcttcctgccatgcctgttgcgtttcacagcagggttgtttgccagtgccgatccc
ctttctcgaaactgtgggctggacatactggtcagtctcatcctcgccaaagccccgccc
cccactgacggctccatggcctttgaaacctacccactgctgttcaccggacagaccatg
ggagtgttcagcactaaatccagcagtttaacatcagagcagccgccggtgccagagctg
gtactgtcgctgatccaatttcctgatggccagcagcagtccatcaccgacctgtcactg
ccgtgggctgccctggtgcttctgccacacctcaggcccattgctccagctagtgttgtt
ccagctgtgactgctttcctaaaccacctcctgtgtgagattgaggcagaaagactggga
aaagctgggctgtttgtagccaggcaagccctgagctgcctcctcactctggatggctct
gcccagcttctctcgctgttcactgtggacaaaatcaactcaatcctacgaaactttccc
acggacctttctgccctggtgcttggagacctgtactacactcgcctgtcactcagcggt
gtctcagagcacctttcccacaatgcactgctggagctccaccagatgctccacgccaac
ctctcctccaacatttccaagatccgcttgctgactctgaggattctctcccagtttgag
gcggagctccctccccagacagagggtgaggagagtgtggaggtgcagcccgtgttcgcc
ttgtgcctgcaggccgagctggtgccggctacggtgcaggactgcagagagaagctgctt
cacctccgcaagctgagacacgacttggtgcagcgcagcctgcctcaagggccacccggc
accttccagcaggtgccactgcgttacctcatcgcaatgcttttcgtcaacttcaggcca
ctgtgggaaggagtcattgaacttattgtgagccatgctagaggcatggacaacaaggac
ttctggagggtcttccatgaacatctggaaatggtggcagggatagccgaaaaggaatta
caggagtgctgcgaggaggatgaagaggaggaggatgaagaggaggaggagatgggtgtc
gagggcgagccgggctgtgatgtcattgaaagcggcgacatgggggtgctgttcctggag
cagctgaacttgacctcaaaccccaacgagaggacggacttccccaacttccgtggcctg
ctgtggcgctgcatgacccagtttcccgaccgggtggaaccgcgcagccgggaactgagc
cccctcctgctgaggttcatcaggaacgagttttaccacgccgacctacaggtggctccc
actcaggacttgaggaaggtggatcgcgctcccctagaggagtccaggatgactgtgggt
gaagatgaagagggaggggatgatgaggaggagccagaggagggaggcagacgagagaaa
aaaggtcctcctaagagagctgctgccaaagaactgattgcccatctgaaggtatttgcc
aaattcaccaacccgcgctctctctacatggagagcagcctcggtgagctatacaaccag
ttgctctgccatcagaaccatcagatccagcgagtggcactggaatgtgttcttacatac
aaagaccccaacatagtaccatacaaggagaatctcgagaggctactggacgacaaacac
ttcaaagatgagattatccaattcaacatcactgaggagacgggagtggttgaagcttca
cacagagctatactcatccctttgctcatgaggatcctgttcggccgtatgcgcagtaaa
gcaggcagtaagtttcaggggaagtcgagtgccaccacccggtcctccattatcctgcgt
tttctgggaggttgccaacagcaggagctgggaatattcatcgacttgctgcttgagccc
atctgctatcacagtgaaggctcctgcttggaagcagtgaagaaagcgatctccaagacc
gacgtgggtgccgtcctgccgctgggccgccagcacagcctgctgaacatcatccacgtt
gtgatccagaaactaggccacctcatccacctccacctacccaaggtgctgcagatcctg
ctgtgtgtcaccgcctcagtgtccgtcgtgctggaccacagggaccagctgcgtccaggt
tgcatcggtcctctgaagcacctgagacaactcggcatcctgaggatccaagacttcttt
gacggcttcgattcctacagcttcagtgcagacgagctggatgctgtctttcaggccgtg
gtctggcctcaggtgtgtcgtctccctactgagagcccttactcccccagcccactgctg
aaactcatccatgtctggtgcaaaaatgccaggtacttccccctcctggccaaggagagg
ccaaaccagccggagtataacatcctccttaacgtcttcgccctcctctccgccaagaac
gcttccccagtgaccatcaaggcggtgatggacattgccgagtctctagcaaccactgaa
gactttgttgcttcagacgttgagaccgagctgagcgtcaacggcagtgtgttcccagag
cccaaagagggctctttcatcactgcagactcattgactcagggctccagagtgctgctg
cctcacgtctccaccctgctgcagtacctcagcagagtggtgcgcaacacgggccgactc
aagcagaagaagttcaaggcgcacgtggccaaagagctcaacatcctctccaaggtcagt
cggtttgtgagcgacaaggagcagagcacggtgctcatccgcttgttgctgccctacctc
ctcaaaggcctcaattctcaagagataacaatcgacattctggcaacgctgcagaacctg
ctgcgacagtgtgtgaagccgtctgccttcctgcggccgctctgcaaactcttcgccgtc
attaacaaccagctgcccaggcaggccctgaacaatgtcttccagactctgtcagatctg
gagcccaatctcttgtacatcactgaattggcaacgaagctcaacgcgtttgacagccga
cacttggatgagattcactttgatgtgcgtctgccggctttccaagacgccaccaggcgg
gtcaaagaaatggcgactctggacctggactatatctacatcatcatgtacaactgcttc
cacacatttgagcttggcgacatgtcgctgggagacaacgccaccacgtgtctgtctgca
gtgatcacccagctggcggcggtcggggctggaggacagctctaccaggacatcgtgcag
aacaccatcctggacgcggtgcacagggggctgcagagcaagacggatagcgtgcagcat
gaatacaccacagtgctggcctgcctggtgaagaccttcccctctaagaaagagttcaga
gacctggtacagctcaccaactacactgaccccgagtctgacttctttgagcacatgaag
cacatccagatccaccgtcgtgctcgagccctgaggaggctggccaagcagctgaccgag
ggccaggtggtgatgactcctcgttctctccagaattacatcatgccgtacgccatgact
gccctgctagatgagaagatgctgaagcatgacaacatgatcttggcgtctgtggcgatt
gtgggcgctgtgtgccgcaggctgacctggtccaagtatcttcactacctcaaacacttc
gtctacgtcctgcagacagggcaggctgagcagaaactggctgccaatttgctggtcacc
gtcctggatgctttccattttgaccacgagaccctcagcagagaaatggaagcagccaag
gccagagaggccgggggtgttgcagaggcagtggaggaacctgaattgggcaacaatgag
gaggaggaggcgatgcaggtagacggtaacgccgctccggccgatgtccccatggatatg
gacacccccggtggggaaaagcaggttgcccctaaaaaagacgccgcctctgaagccaag
gtgccggcaacccctgcaaccctggcagcgagcagcgggctgccgcagagcgcaggcgag
ctggagtctctgatcagcaccatccaccagaccgtcactaacaccgtgctgcctcgcctc
caaaagtgtctcaccgcaaagattaagcgcgacgacgagcacaacgcagtgaggtcgaag
gacgtgaaggatgaggagacggcgaggataccgatcgcctttgccatggtcaaactgatg
cagactctaccgcctcatgtcatggaggccaaccttcccgggatcctcatcaaggtgtgc
gtggtgctgaggaaccgtttccaggaggtccgtgaagtggcgaggggaaccctggtgaag
atcatcgagactttgggctacaagtacctgcagtacctgctcaaagagatgcacgggacc
ctggtcaagggctaccaggtccacgtgctgacattcacagtacaccggctgctgacagtc
ctcagtccgaccctgaagagcggggacctggacccgtgcatgaacatgctaatcgacatc
ttcaacaacgagctgttcggacccgtggccgaggagaaggaggtgaaggggatcgtctcc
aagctgatggaggctcggcacagcaaaagcatggactcctaccagctgctggcccaattt
tgcagcagggagagcgtcaccaagttgttattgccattgaaggagctcttggagaattcg
tccagtctgaaggtgtgcaacagggtggctgccgtgctgaggcaagtggtcctgggtctg
ctcgtcaatgagggcatgacatctcaagatatcttactgctatgccatggcctggttagc
caaagtctgcccctccttaccaagagagaccgagagaaagcctcggccaagcccccccca
gaccccaagctgccccctcccagctgcctgctcctgcttccgactccaaagagaggaagt
cggaaggctccggtcagcagccgaaccaacctgcacatcctcgttggcgccggcctcaag
ctgctccacctgagtctgaagaaatccaaagtgaagtcctccgacgcctctgttctggag
atgctggatcctttcgtactgctgctgctcgactgcctcgagtccatgcacgtcaaggtg
atcacagaggctctgctggcgttcacttgcatgttgaagctccccctgccggcagtggag
cacaacgccagccagctggccaagccgctcttcgtcctgctgaaggattactccatggcg
ggagccggccacggggagaacttcctgctcgtccagaactgcttcaaggccatcaccata
atggtgaagaatgtcaaaaacaaccagatttcagagactcaactgcaagtgctgctggga
tatgctgaggaagacatctacgaccagtctcgccaagccacggccttcggcctgctgaag
gccattctgttcaggaagctcattgttccggagatggaggaggtgttgaaaaaggtggcc
aagctttccgtaaccagcagcaatatgatggtcagagttcgctgtcgacagatgttttta
aaatacctgctggactaccctctggggaagaagctgagagggcacctcgactttgtggtg
gcccagctgcagtacgagcacgacatgggcagggagtctgtgctggagatgctggcctac
atcttccagacgttccctcagcggctgctgtttcagtacaacggcttgttcttcgccccg
ctggccctggtcgtgctcaacgatgactctgcccgctgtaagaaaatggccgccatggct
atcaaggccctgctggccaagctggacctgaaccaccacaacgccttgttctccctggtc
accacatggctgaatgcaccaaaggccaacctgcggcgcctcggggctcagatctgcggc
ctgtacgtggaggtggaggaggagaagtttacccgtcgcacggacgacctgctgcctctg
ctggagaaagagatccaccctgaaaattacgaagacatctacgaggaggaggatgagcga
ggagcagaccgcctgctgttcagctttctgactcttatcaccaaactctgccaacactgc
ggcctgctggagctcagcaagcctcacgacacactctgtaggatctggggtcacattgaa
gcccacctgcggtaccctcactgctgggtgtggctgactgcctcgcagctctttggtcag
ctgttcgccgctcatccggcggagcagctggtcgccttgtggagaggagagggagatgct
tcccctcggcctgcagccacggagtttatcaccagcagcctggacaagaagatgagggag
ttggcgttatcgttctgccatcagctacagtccaagttccttgacgtggcttcaggagag
caggtgatcaagaacctgctgttcgtcggcaaggtgatctaccttctttctcccgagtct
gacgttactcctgaggaagaagaggaggagctgagggagaacatagtggaagaagaggag
gaggaggaggaggaggagctgactgagaacgtagtagacgaagagggggcggaaaaagaa
gcagatggcggagaagaggaggacgacgcagccgacaaggatgatcggcctccttcgctg
ctgtggctgataaagaagctgtcgctgatgaccaagagagaggcagcacacactcccaaa
gtccccctgaagagaacgtgcgtgttcaagttcattggggcaatggccatagacctgggc
aaggatcgacttggcccctatctgaccactctcatcactcctctctaccgagagctggac
agcacgtatgcagaccaagatcccaccctgaagaacctggcccaggagctgatagagctg
ctgaagaagcaggtgggactggagagattctctctggccttctccgccgtccagaaggag
ttttcacagaggagagtggcgcgcaaacaacaccgagccatgctggcggtgtccaaccca
gaaatggccgccaagaagaaactcaagaagaacaagaacaaaatagaagccaagaagagg
aagatcgagttcctccggcccgggtataaagccaagaggagccggacccacgcgctcaga
gacctggccatagtgaagtga
DBGET
integrated database retrieval system
