Gasterosteus aculeatus (three-spined stickleback): 120818019
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Entry
120818019 CDS
T07457
Symbol
pcdh20
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120818019 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gat01009
]
120818019 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120818019 (pcdh20)
Protein phosphatases and associated proteins [BR:
gat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120818019 (pcdh20)
Cell adhesion molecules [BR:
gat04515
]
Cadherins
Protocadherins
120818019 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig-like_KY
Motif
Other DBs
NCBI-GeneID:
120818019
NCBI-ProteinID:
XP_040030689
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All DBs
Position
IV:complement(12463610..12469039)
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AA seq
913 aa
AA seq
DB search
MNQAFSCAGLGCCLRPRHSLTAGGSWVTCVRTMGHXDNMNWAGLLQSLLLVIHLQQVICG
SVRFSVPEEKEPGFLAGSLSKYFPPPYQLLTQEYLWLDKNTGNFYTTEQKMNREALCPKD
TKAEECIILHTAVIGPSGDLVQFPVIIEDINDNAPHFENSEIHLRVSEDTRVGTSFLLDD
QAQDMDAGQNGELRYRLEDSDGVFSLKVEDDGPVIMLVVKTALDRETRDTYLMALVATDR
GSEPLSAMATLIVTVTDVNDHCPSFGTESPPNVTIPGDSTKNSLVARVRATDRDSAPNAG
IVYSLSSKVSERVKKLFSLDSLTGYIRLAQDLQNDDSEVLQLNVLASGHHCPPADTRVTV
SIVPKENQELTIKIGFIADHQNQTMVLQENQPPTVLAVLELQGDSGFIGSSLAIESEGPF
TLSPQNGKYLLSTSKPLDYETKSEHFIYVAAQGRLAEGSVITSSRQMIKVLVADVNDNAP
QFFQSRHQLEVEENNQPGMSLLRVAASDADSGHNGRVTYRLDKLASTVFNIAPDTGQLSV
SAVLDKEQQGEYKLTVFAQDSGSPPLESVASVSIRVLDQNDNTPVFLTPHFIFFVPENVP
PFTEVGRVGVTDADEGENGDTELHVVNSRGPFVVYNPEGTLRTTGSLDRETDDRYELYLL
ASDRGRPLALTSTARVTIFVQDINDNRPKVILPSSNSSCQTVSPGTIEGTVVTKVCAIDE
DSGLNSDITYTVVAPESVQKSSPFRLDSRSGNITVAQQLLEKDLGMHHLFIVVRDGGKPA
PLYTTIWVNLLVNDSVARCNLDRVPTWTGTSDLDQTPSKAPVCEMGDARSAQLTLLVGLG
MMLVSTCFLVATVVLYLKQKRRSLQLSKRGHIEENEIPLRLKNKYHSDDEIEQIKASNVC
NPHLHFVKDEIRL
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggccttcagctgtgcaggtttaggttgctgccttcgtcctcgacattcactc
actgccggtgggtcttgggtaacatgtgtgaggacgatgggccatntggataatatgaac
tgggctggactattgcagagtcttctgcttgtgatccatctgcagcaggtcatatgtggc
tcggtccgattctctgtcccagaggagaaggagcccggatttcttgcaggttcacttagc
aaatactttccccctccttaccaactcctgacccaggagtatttgtggctggacaaaaac
acagggaatttctataccactgagcaaaagatgaatcgtgaggccctctgccccaaggac
acaaaagctgaggaatgtattattttacacactgccgtcattgggccctcaggagacctc
gtacagtttcctgtgatcatagaggacatcaatgacaatgcacctcattttgagaacagt
gaaatacacctcagggtgtctgaggacacaagagtggggaccagtttcttactagacgac
caggctcaggacatggatgctggacaaaacggcgagctgcgttaccgcctagaagattct
gatggagttttcagtttgaaagtggaagacgacgggcctgtcatcatgctggtcgtgaaa
acagctctggacagggagaccagggacacatatctcatggcactggtggccaccgaccgt
ggctcagagcctttgagtgccatggcaactttaatagtcacagtgacagatgttaatgac
cactgtccaagctttggcacagagagcccccccaatgtcaccatcccaggagactccacg
aagaactcactggttgctcgggtcagagccacagacagagattcggcaccgaatgccggc
atagtctactccctcagttccaaagtctcagagcgggtcaagaagctctttagcctcgac
agcctcactgggtacatcagactcgcacaggacctccagaacgacgactccgaggtgctg
cagttgaacgtgttagctagcggccaccactgccccccagcagacactcgggtaaccgta
tccatcgtccccaaggagaaccaagagctgacgatcaagatcgggttcatagcagatcat
caaaaccagactatggtgttacaagagaaccagccccccactgttttagctgttttagag
ctccagggtgacagcggttttataggctcgtctctcgctatcgagagtgaggggcctttc
actttgagtccacagaatggcaaatatctgctttccacatcaaagcccctcgactacgag
acgaaaagcgaacattttatttatgtggcagcgcaggggagattagcggaaggatctgtg
atcacatcttcaagacagatgatcaaggtgttggtggcggatgtcaatgataatgcgcca
caattcttccagtctcgccatcagctggaggtggaggaaaacaaccagccagggatgtcg
ctgctgagggtcgcagcgtcagacgcagacagtggacacaacggcagggtgacctacagg
ctggacaaactcgcgtctaccgtctttaacattgcccccgataccggtcaactgtctgtg
tcagcggttctggataaggaacagcagggcgagtacaaactcacagtgtttgcacaagat
agcggctcgcctcccttggagtctgtggcaagtgtttccattcgtgttctggaccagaat
gacaatacacctgtttttctaacccctcacttcatcttttttgtccctgagaatgtacca
ccgttcacagaggtgggaagggtcggggtgacggacgcagacgaaggcgagaacggggac
acggagttgcatgttgtaaacagcagaggaccttttgtcgtgtataaccctgaggggact
ctgcgcaccaccgggagtttggaccgcgagacagacgatcgctacgaactctacctgctg
gccagcgatcgtgggcgtccgttggctctgacctccactgccagggtgaccatctttgtg
caggacatcaacgacaacaggccgaaagtgatccttcccagcagcaactcctcgtgccaa
actgtctctccgggaaccattgaaggcacggtagtaacaaaggtatgtgccatcgacgag
gactctggactgaattcggacattacctacactgttgtggcaccagagtcggtgcaaaaa
agcagcccctttcggctggactcaaggtctgggaacatcactgtggcccagcaacttcta
gagaaagacctggggatgcatcacctgttcattgtggtcagagatggggggaaaccagct
ccactttacaccacaatctgggttaatctgctggtcaatgacagcgtagctcgctgcaat
ttagacagggtgcccacctggacagggacatctgacttggatcaaaccccctcaaaggcc
cccgtctgtgagatgggggacgccagatctgctcagctgacactgttagtgggcctgggt
atgatgctggtatccacatgtttccttgtggcgacagtcgttttatacttgaaacagaag
agaaggagtctacaactgagcaagagggggcacattgaggagaatgaaattccactcagg
ctcaaaaacaaatatcactctgatgatgaaattgaacagattaaagcaagcaatgtgtgt
aatcctcacttgcactttgtcaaggatgaaatcagactttga
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