Gasterosteus aculeatus (three-spined stickleback): 120818220
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Entry
120818220 CDS
T07457
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like isoform X1
KO
K12597
protein AIR1/2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120818220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120818220
03016 Transfer RNA biogenesis [BR:
gat03016
]
120818220
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120818220
Transfer RNA biogenesis [BR:
gat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120818220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
120818220
NCBI-ProteinID:
XP_040031060
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All DBs
Position
IV:complement(9141012..9146782)
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AA seq
482 aa
AA seq
DB search
MDYSIELEGYDGEQCSKDNNFFGDRSEGEEEINLSYRELHSIGKRAARLRRGSSPPLLLA
YNITCGRALSTSHLHDEEEEEEEGEHPIEWWMLLGGEEQAGDSSIQLNLSYKNGSEDYSG
DEDQTVKAVEDTWAVSDRDKPGAHHSLPSRYFTAGRSLFCDICKKTGHLAKSCYSQKQKC
PTCVLCGLQGHVQRHCGGRPCPSCGLPSHGRSPCERPQVWKQHCQRCGMSGHLSDTCPDT
WRQYHLTIGLELPVRPQTDQILRNKKPPAHCYNCSKRGHHGYECTKTRMVSGTFALLPFV
CHYDTINDVLQCGSRKQKRAKELLSAGPMPLSDQQHLSEATGRSWERNQPVQGRSRMQQE
TFGRAGRRKKWPETRREREELKRLRRDAKARREGGLLKRPRRYFDGKVYPADLHGHKQYT
PPPKKKGKKKNEAGGKSRKSREAERWKKRGGRKRGYLYPHGDIDMGSERLLSPKHRVRHR
KR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggattacagcatagaactcgaaggttatgatggtgagcaatgtagcaaggacaacaac
ttttttggggaccgttcagaaggggaggaagagatcaacttgagctaccgggaacttcac
agcatcggtaagcgggcagcgcggctccgcaggggaagctctcctccgctcctcctggcg
tacaacatcacctgtggacgggcgctcagcacttcacacctacacgatgaggaagaggag
gaggaggagggtgagcatcccatcgagtggtggatgctccttggaggagaggagcaggcg
ggagactcaagcatccagctcaacctgagctacaagaacggctctgaggattactctgga
gatgaagatcagactgtgaaggcagtggaggatacctgggccgtatcagacagagacaag
cccggtgctcatcattctttgcccagccgctatttcacggctgggcgctctctgttctgt
gacatttgcaaaaagacgggacacctcgccaaaagctgctacagccaaaagcagaagtgt
cccacctgtgttctctgtgggctccagggccacgtccagaggcactgtgggggccgccca
tgtcccagctgtggactgccgtcacacggccgcagcccctgtgagaggccgcaggtgtgg
aaacaacactgccagcgctgcgggatgtcaggtcacctctctgatacctgccctgataca
tggagacaataccacttgacaatcgggttagagcttccagtcagaccccagacagaccaa
atcctcagaaataagaaaccccctgctcattgttacaactgttctaagaggggacatcat
ggttatgagtgcactaaaacaaggatggttagtgggacttttgccttactgccatttgtc
tgccactacgacaccatcaatgacgtcctccaatgtggctccaggaagcagaaaagagcc
aaagagctcttgagtgctggacccatgcctctgtcagaccagcagcacttgtctgaagcg
acaggcagaagttgggagaggaatcagccggtccaggggaggagcaggatgcagcaggaa
acgtttgggcgggcgggcaggaggaagaagtggccggagacgcgcagagagagagaggag
ttgaagaggcttagaagagatgctaaagccagacgagaaggaggattattgaagaggccc
aggaggtactttgatggtaaagtttaccctgcagacctccacggtcacaagcagtacact
ccgcctccaaagaagaaggggaagaagaagaatgaggcaggtggcaaaagcagaaagagc
agagaagctgagcggtggaagaagagaggagggcggaaacgtgggtatttatatccccat
ggtgacatagacatgggtagcgaacgccttctttcaccaaaacatagagtgcgccacaga
aaaagataa
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