Gasterosteus aculeatus (three-spined stickleback): 120818409
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Entry
120818409 CDS
T07457
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b isoform X1
KO
K05636
laminin, beta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120818409 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120818409 (lamb1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
120818409
NCBI-ProteinID:
XP_040031381
UniProt:
G3Q9F1
LinkDB
All DBs
Position
IV:complement(32720420..32735101)
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AA seq
1786 aa
AA seq
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MLLLEMSPAVLFITTLALCCSVRAQQQLPEFPDVCTEGSCYPATGDLLIGRAHKLSVSST
CGAERPERFCIVGHLEEEKKCFVCDSRRVFDEDSNQGSHAIDNLVTTFAHNRLKTWWQSE
NGVENVTIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGTTWQVYRYFAHDCEASFP
GVPSGPMAKVNEIICDSRYSDIEPSTEGEVIFRVLDPVFEIEDPYSLKIQNMLKITNLRV
KFLKLHTLGDNLLDYREEVTEKYYYALYDMVVRGNCFCYGHASECAPIDHGTPAAIEGMV
HGRCVCNHNTEGLNCERCQDFYQELPWRPAEGRNSHACKRCECNRHAASCHFDPAVYATT
GGASGGVCDDCRHNTAGRQCEQCAPFYYKHPNRDLRDPNVCQPCDCDPAGSLQGGLCDPR
TDVAAGLISGQCRCKANVEGERCDHCRQGHHGLGAEPHGCLPCTCNPLGTLPGGNPCDPD
AGSCFCKRLVGGHNCDACLPQHWGLSNDMDGCRPCDCDHGGAVHDDCDPRSGQCACREHM
HGRRCDRVQSGFYSVSLDHYTYEAEDAAHGPGVTVVPRPRPLDRSPTWTGPGFVNVPEGA
YLEFTVDNVPESMDYDVLIRYEPQLPEQWEQVDVRVQRPASTPQEHAPFCGGREDQDDQS
VSLPPGSRHVSLGRPVCLERGLNYTIRLTLPLYSSAGDVQSPYTLIDSLVLIPSVRELNM
FHGLDGDEAWDTFQRYRCLESSQSVIKSPLTDICNDYIFSVSALLHKGAVECRCDPQGSL
SAVCEASGGQCRCRPNVAGRNCDRCAPATFLFGPAGCRPCGCDPLGSVGAFCHEATGQCE
CAPGAAGRHCSHCLPGFWGFPQCRACQCNGHSEYCHPQSGECQGCRDFTAGRHCARCLAG
YHGDPQLGSGGHCRPCMCPDGPSSGRQFSDSCYLPAAANQLVCVCSPGYKGARCDECAPG
YFGNPQVPGGRCLPCQCNSNIDMHDPGSCDARTGACLKCLHHTEGYGCQQCRQGYHGDAA
AQTCWKCTCDSAGTSPRACSSPGECQCDRRSGQCPCLPNVVGQNCDACAADTWDMAGGAG
CRRCDCDPVHSFGSSCDEVTGQCSCRPGFGGKTCRECRELFWGDPQVKCHACDCDSRGIS
SGQCHRATGACTCAAGVSGPRCDQCARGHRGDFPACEPCHRCFAAWDATVGELTNQTRRL
EARVTRLRASRVTAPYKDLFRSLERNADAVRGIVERKPAAELEQIQELMQQITGVMSYLN
GKLNTTEETASLLRRDANATDANLGALSDAAEQLQRTVRELQQRVSDIKNANIQGAADTI
AEARAQSVAAERSANTSTSGPGSWVEQSAALRKAAEGKLSGARKEFDRRNQRNSEKLDKL
SAALETLVLSPLSEATCGGAAEGDGCSGSPCGGLGCGGEGGAPRCGGEGCGGLVAASHAA
LTSARDRDRQVVAAGHEVDELSRLVWEANNRANEAKVSALGALVGSNRSRERVEQSNQQL
RSLIMEIRDLLSDEKANVSVIEAVADEVLALKMPTSTQELRELTKEIREKVESLTSVEEI
LSQSAEDIGAAELLLRRAGSASKEASNTKEAADKMQAVLDETERAQSVATDALQLAQNNT
NATRELLSSVESETAASELKLGNTTGRLLQLDREVGLLRQNNLEVNRRVETANRTTDRAR
LDAAEAQQEFDEEVKGRLVTVEDLVEDKGESALQGRTTAERLQKEAKELLAQSVSKLQRL
EELERSYEANQLLLEAKAAELLELEVQARLALEAFSHKVMLYSTCA
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgctggaaatgtcgcccgcggtcctcttcataacgactttggcgctgtgctgc
tccgtcagggcgcagcagcagctgcccgagttcccggatgtgtgcacggagggcagctgc
tatccggccacaggtgacctgctgatcggccgcgcgcacaagctctccgtctcctccacc
tgcggcgcggagcgtccggagcgcttctgcatcgtcgggcatctggaggaggagaagaaa
tgcttcgtgtgcgactcgcggcgcgtcttcgacgaggacagcaaccaaggcagccacgcc
atcgacaacctggtcaccaccttcgcccacaaccggctgaagacctggtggcagtcggag
aacggtgtggagaacgtgacgatccagctggacctggaggccgagtttcacttcacgcac
cttatcatgaccttcaagacgttccggccggccgccatggtgatcgagcgctccatggac
ttcgggacaacgtggcaggtttatcgctacttcgcccacgactgcgaggcctccttcccc
ggcgtgccctccgggccgatggccaaggtcaacgaaatcatctgcgactcccgttactcc
gacatcgaaccgtccacggagggagaggtgatatttcgggtgctggaccccgtctttgag
attgaagacccctacagcctgaagatacagaacatgctgaagatcacgaacctgcgggtg
aagttcctgaagctccacacgttgggcgacaacctgctcgactaccgcgaggaggtgacg
gagaagtactactacgccctctacgacatggtcgtccgcggcaactgcttctgctacggc
cacgcctccgagtgcgccccgatcgaccacggaacaccggccgccatcgagggaatggtc
catggccgctgtgtgtgtaatcacaacaccgagggactaaactgtgagcgctgtcaggac
ttctaccaggagttgccgtggagaccagcggagggccgaaacagccacgcctgcaagagg
tgcgagtgcaaccggcacgccgcgtcgtgccacttcgacccggccgtgtacgccaccacc
ggcggcgccagcggaggcgtgtgcgacgactgccgccacaacacggcggggcgccagtgc
gagcagtgcgcgcccttctactacaagcacccgaaccgcgacctcagggaccccaacgtc
tgccagccgtgtgactgtgacccggccggctctctgcagggcgggctgtgcgacccgcgc
accgacgtggccgccgggctgatctcgggccagtgccgctgcaaggccaacgtggagggc
gagcgctgcgaccactgcagacagggccaccacggcctgggggcggagcctcacggctgc
ctgccttgtacctgcaacccgctgggcacgctgcccggaggaaacccctgcgacccggac
gccggaagctgcttctgcaagcgactcgtcggcggacacaactgtgacgcgtgtctgccg
cagcactggggtctgtccaacgacatggacggctgcaggccgtgtgactgcgaccacggc
ggggccgtccacgacgactgtgacccccgctcgggtcagtgtgcgtgcagggagcacatg
cacgggaggcgctgcgatcgagtccagtccggcttctactccgtctccctggaccactac
acctacgaagccgaggacgccgcgcacggccccggcgtgacggtggtgccgaggccccgc
cctctggaccgcagccccacgtggaccggcccgggcttcgtcaacgtcccggaaggagcc
tacctggagttcaccgtggacaacgtccccgagtccatggactacgacgtcctgatccgc
tacgagccgcagctgcccgagcagtgggagcaggtggacgtccgggtgcagcgtcccgcc
tccaccccccaggaacacgcccctttctgcggcggccgcgaagaccaggacgaccagtcc
gtctccctcccgcctggatccaggcacgtgtcgctggggaggccggtgtgcttggagaga
ggactgaactacaccatccgtctcactctgccgctgtactcgtcagccggcgacgtccag
agcccgtacacgctcatcgactcgttggtgctgataccctcggtgagggagctgaacatg
ttccacgggctggacggggacgaagcgtgggacacgttccagcgctaccgctgtctggag
agcagccagagcgtcatcaagagccctctgaccgacatctgcaacgactacatcttcagc
gtctccgccctgctgcacaaaggcgccgtggaatgccgctgtgacccccagggttcgctc
agcgccgtgtgcgaggccagcggcggccagtgccggtgtcgacccaacgtcgcgggcagg
aactgcgaccgctgtgcgcccgccacgttcctcttcggccccgccggctgcagaccctgc
ggctgtgaccccctgggctccgtcggcgccttttgccacgaggcgacgggccagtgcgag
tgcgcgccgggcgccgcggggcgccactgttcccactgcctgccgggcttctggggcttc
ccccagtgccgagcgtgccagtgcaacggccacagcgagtactgccaccctcagagcggc
gagtgtcagggctgcagagacttcaccgccggacgccactgcgcgaggtgtctggccggt
taccacggtgacccacagctgggctcgggtggccactgccgtccctgcatgtgccccgac
ggcccgagcagcggacgccagttttcagacagctgttacctcccggctgccgcgaaccag
ctggtgtgtgtgtgcagccccggatacaaaggtgccaggtgtgatgagtgcgcccccggc
tacttcgggaaccctcaggtgcccggcgggcgctgcttgccctgccagtgcaacagcaac
atcgacatgcacgacccggggtcctgcgacgctcgtacgggcgcctgtctcaaatgcctg
catcacaccgagggctacgggtgtcagcaatgcagacagggttaccacggcgacgcggcc
gcgcagacctgctggaagtgcacgtgcgactcggcgggcacgtcacctcgggcctgctcc
tcccccggcgagtgccagtgcgaccgccgcagcggccagtgcccctgcttgcccaacgtg
gtcggtcagaactgcgacgcctgcgccgccgacacgtgggacatggcgggcggggcgggc
tgccggcgctgcgactgcgaccccgtccactccttcgggtcctcctgcgacgaggtcacg
ggacagtgttcgtgcagacccggtttcggcgggaagacgtgtcgagaatgcagggagctc
ttctggggggacccgcaggtcaaatgtcacgcttgcgactgcgactctcgggggatctcc
agcgggcagtgccaccgggccaccggcgcgtgcacctgcgcggcgggcgtgtccggcccg
cgctgtgaccaatgtgcccgcggccaccgcggcgacttccccgcctgcgaaccctgccac
cgctgcttcgccgcgtgggacgcgacggtcggcgagctgaccaatcagacgcgccgcctg
gaggcccgggtgacgcggctgcgggccagccgggtgacggcgccgtacaaagacttgttc
cgcagcctggagaggaacgccgacgccgtgagaggaatagtggagagaaagccggcggcg
gagctggagcagatccaggagctgatgcagcagatcaccggcgtgatgtcctacctgaac
ggaaagctgaacaccacggaggagaccgcgagcctcctgcggcgagacgccaacgccacc
gacgccaacctgggtgcgctgagcgacgcggccgagcagctgcagcggacggtccgggag
ctgcagcagcgggtgtccgacatcaagaacgccaacatccagggcgccgcggacaccatc
gcggaggcgcgcgcgcagtccgtggcggccgagcgcagcgccaacacctccaccagcggc
cccgggagctgggtggagcaatcggcggcgctgcggaaagccgcggagggcaaactgagc
ggcgctcggaaggagttcgaccgcaggaaccagaggaactcggagaagctggacaagctg
tcggccgcgctggagacgctggtcctgtccccgctgagcgaggcgacgtgtggcggtgca
gctgaaggggacggatgctccggctccccctgcggcggtttgggttgcggcggcgagggc
ggagcgcctcggtgcggcggggaggggtgcggaggcctcgtcgccgcctcccacgccgcg
ctgacatcagccagggaccgggaccggcaggtggtcgcagcgggccacgaggtggacgag
ctctctcggctggtgtgggaggccaacaaccgcgccaacgaggccaaggtgagcgctctg
ggagcgctggtcggatccaaccggagcagagagagggtggagcagagcaaccagcagctg
cggagcctcatcatggagatacgggacctgctgagcgacgagaaggcgaatgtttcggtg
atcgaggcggtggccgacgaggtgttggctctgaagatgccgacctccacccaggagctg
cgggagctgacgaaggagatcagggagaaggtggagagtctgaccagcgtggaggagatt
ctcagccagagcgccgaggacatcggcgccgcagagctgctgctgagacgagccgggtcg
gccagtaaggaggcgtccaacacaaaggaggcggcggataagatgcaggccgtcctggac
gagactgagcgcgctcagagcgtcgccacggacgccctccaactggcccagaacaacacg
aacgccacccgggagctgctgagctctgtggagtcggagacggccgcgtcggagctgaag
ctcggtaacacaacgggccgactgctgcagctggacagggaggtgggcctgctacgacag
aacaacctggaggtgaaccgccgggtggagacggccaaccggaccaccgaccgggcccgg
ctggacgcagcggaggcccagcaggagtttgacgaggaggtgaaggggagacttgtgacg
gtggaggacctggtggaggacaaaggggagtcggcgctgcaggggaggacgacagcggag
agactgcagaaggaagccaaagagctgctggctcagagcgtcagcaagctgcagagactg
gaagagctggaacgctcctacgaggccaaccagctcctcctggaggccaaagctgccgag
ctgctggagttggaggtacaggcccgcttggcgctggaggcgttcagccacaaagtgatg
ctgtacagtacctgtgcgtga
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