Gasterosteus aculeatus (three-spined stickleback): 120818871
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Entry
120818871 CDS
T07457
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gat03016
]
120818871 (trub1)
Enzymes [BR:
gat01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
120818871 (trub1)
Transfer RNA biogenesis [BR:
gat03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120818871 (trub1)
Prokaryotic type
120818871 (trub1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
120818871
NCBI-ProteinID:
XP_040031670
UniProt:
A0AAQ4S440
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Position
V:complement(2739654..2744740)
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AA seq
271 aa
AA seq
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MAGNIHNTAAPISSSLSKLQALNGLFAIYKKQGPTSADVLNTLKEVLLKEAGVKNSNPRK
RKKQSLKMGHGGTLDSTASGVLVVGVGNGTKMLSTMLAGTKKYVAVGELGKATDNLDASG
SVVLEKDFEHITSLDIEEKLKAFTGDIMQVPPLYSALKKDGQRLSVLLMKGHKVEAKPAR
PVTVHNLRLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHALHEEQWTLEHVLRSLQPCSEPKPPGANT
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaacatccacaacaccgcggctccgataagtagctctttgtccaaactacag
gcgctaaatggattgtttgcgatatataaaaaacaagggccgacatctgcagacgtgtta
aatacactcaaagaagttttacttaaagaagccggagtgaaaaactcaaacccgcgaaag
aggaagaagcagagcctgaagatggggcacggagggacgctggacagtacggccagcggg
gtgctggttgttggtgttggcaatggcacaaagatgctaagtacaatgttggctggtact
aagaaatacgtggccgtgggtgagctggggaaagctacagacaacctggatgcctctggc
agtgtggttctggagaaagactttgaacacattaccagcttggacattgaggagaaacta
aaagctttcactggagacatcatgcaagttcctccgctctactctgcgctgaagaaagac
ggccagcgtctctccgtcctgctgatgaaaggtcacaaggttgaggccaaacccgccaga
ccggtgacggtgcacaacctgaggctgcaggagttcaagcctcccctcttcaccctggat
attgagtgtggtggtggattttacgttagaagcttggtggatgacctgggaaaagctctg
tcatcgtgcgctcatgtgaaggagctgatccggaccaagcagggtcagttcaccctggag
gagcacgccctgcacgaggagcagtggacgctggaacacgtcctgcgctctctgcagccc
tgctcggagccgaagcctccgggagctaacacctga
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