Gasterosteus aculeatus (three-spined stickleback): 120819097
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Entry
120819097 CDS
T07457
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120819097 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120819097 (smarcd2)
03036 Chromosome and associated proteins [BR:
gat03036
]
120819097 (smarcd2)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120819097 (smarcd2)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120819097 (smarcd2)
PBAF complex
120819097 (smarcd2)
GBAF(ncBAF) complex
120819097 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
120819097
NCBI-ProteinID:
XP_040032148
LinkDB
All DBs
Position
V:complement(12152196..12159095)
Genome browser
AA seq
505 aa
AA seq
DB search
MASRGGFTPMNLNASPMNVAHGAGMRMPSVPQHPAGYPRSMNTAPQYPQRPGMPSNRVGG
PMGSMGGQLPGPSYGGGNMPMRQGMGPPNMDASRKRFLHMHQQQQQLQQQQEALGGLRRG
AKRRRMADKVLPQRIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPIMQKRKL
RIYISNTYTPSKPEGEEAEKVSSWELRVEGKLLEESGKQKRKFSSFFKSLVIELDKELYG
PDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMIDHQPPQYKLDPRLARLLGVHTQ
TRANIMQALWLYIKNNKLQDCHEKEYINCNRYFRQVFSCPRMRFSEIPMKLASLLQHPDP
IIINHMISVDPTDQKKTACYDIDVEVDDPLKGQMNSFLSSTTNQQEIAALEMKIHETIEY
INQLKTERDFMLSFSNKPQDFIQDWLKSQCRDLKLMTDVKGNPEEERRTEFYEAPWVPEA
VGRYVYSRLQQRRQELEQVLGIRLT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaggggaggattcactccgatgaatctgaacgcgagccccatgaacgtcgcg
cacggcgcgggcatgaggatgccaagtgtgccccaacatccggcgggatacccccgcagc
atgaacaccgctccccagtacccacagcgcccagggatgccgtccaacagagtggggggc
cccatggggtcaatggggggtcagcttcctggcccctcttatggcggcgggaacatgcct
atgcggcaaggcatggggcccccgaacatggacgcctcgaggaaacggttccttcatatg
catcagcagcagcagcagctgcagcagcagcaagaggctctgggaggcctcagacgagga
gcaaaaaggcgcagaatggctgacaaggttctcccacagaggatccgagacctggtccca
gagtcacaggcctacatggatctcctggcgtttgagaggaaactggaccagaccatcgcc
cgaaagcgaatggagatccaggaagccatcaagaagcccatcatgcaaaaacgaaagctc
aggatctacatctctaacacgtacacgcccagcaaacccgagggcgaggaggcggagaag
gtgtcctcctgggaactgagagtggagggaaagcttctggaggaatctggcaagcagaag
aggaagttctcgtctttcttcaagagcctggtgatcgagctcgataaggagctctatgga
cccgacaaccacttggtagagtggcacagaatgcccactactcaggagacggatggtttc
caagtgaaaaggcccggcgacgtgaatgttaagtgcaccctcctgctcatgatcgaccac
cagccccctcagtacaaactggatccgcggttggctcgtctgctgggcgtgcacactcag
acgcgagccaacatcatgcaagccctttggctctacatcaagaacaacaagctgcaggat
tgtcacgagaaggagtacatcaactgcaaccgctatttcagacaggtcttcagctgtcct
cgcatgaggttctctgagattcccatgaagctggccagcctcctgcagcaccctgacccc
atcattatcaaccacatgatcagtgtggaccccacggaccagaagaagacggcgtgctac
gacattgatgtggaggtggacgacccgctgaagggccagatgaacagcttcctgtcctct
acaaccaaccagcaggagatcgctgcgctggagatgaagattcacgagacaatcgagtac
atcaaccagctgaagaccgagagagactttatgctgagcttcagcaataaacctcaggac
ttcatccaggactggctcaagtctcagtgcagagatctgaagttgatgacggatgtgaaa
ggaaacccggaggaggagaggaggaccgagttctacgaggctccctgggtaccagaggct
gtgggcagatacgtttactccagattgcagcagagaagacaagagttggagcaggttttg
ggtatccgactcacctga
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