Gasterosteus aculeatus (three-spined stickleback): 120819393
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Entry
120819393 CDS
T07457
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120819393 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120819393 (msh2)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120819393 (msh2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
120819393
NCBI-ProteinID:
XP_040032675
UniProt:
G3NE68
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Position
V:8997698..9006015
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AA seq
935 aa
AA seq
DB search
MAVQPKHNLSLDSAAEHGFLSFVFSMPEKPDTTFRIFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKYLGSGSRRLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHDWKVDYKA
SPGNLTQFEEILFGGGTGAVGCTGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGENNTDSGKLREVVQRGGILISDRKRAEFSSKNMIQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLDLLSDESNFNSFSLTALDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRYSASLQDCFRVYQAVSHVPALVSAL
ERYSGSYQVLLDAAFISPLRDLQTDFVKYQEMIETTLDMNQIDHHEFLVKASFDPALSEL
RENMDALEKSMQAVLSGAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKNRAEYEEAQNAIVKEIINIASGYVDPLQTLSDVTAQ
MDAVASFAVASVSAPVPYVRPRLVADGRRRVELRQARHPCMETDADTAFIPNDVSFAQGE
KDFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQVKG
VSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASEIGCFCLFA
THFHELTALAAQRPAVHNLHVTALTSHDTLTMLYRVKSGVCDQSFGIHVAELACFPPSVI
AVAKEKAEELEEFQEPAGEKSEQEEEPEAKRRRTDRQVGENLIQDFLEKAKSLPAATMSE
EEVKDALRKMKQELVAKNNTYIKEILSRCVPAKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaacacaacctgtctctggacagtgcggccgagcacggctttcta
agcttcgttttctccatgccggagaagccggacaccactttcaggatattcgaccgcaac
gactactacacggttcacgggaaggacgccgtgttcgcggcgaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagccgcaggctggagagtgtggtgctgagc
aagctgaactttgaggccttcgtgaaagacctgctgcttgtgaggcagtaccgagtagaa
gtgtacaagaaccacagcaagagcagcaaggagcacgactggaaggtcgactacaaggcc
tctccgggaaacttaactcagtttgaggagatcctgttcggtggtggaaccggcgcagtc
ggttgcacgggagtcgtagccgtgcggttcgccaccggagccgacggacagcgagtggtc
ggggtcggctacgtggacgcggcccagaggacgatgggagtgtgcgagttccccgacaac
gagatcttctccaacctggaatcccttctggtccaaatcagccccaaagagtgtctgttg
gcccagggcgaaaacaacaccgacagcggcaaactacgggaggtggtacaacgtggcggc
atactgatctcggaccggaagagggcggagtttagtagcaaaaacatgatccaggatctg
aacaggctgctgagggccaagagaggagagaccgtggcgagcaacacgctgcccgagctg
gacaaacaggtggccatgtcgtgcttggctgcagtggtgcgtttcctcgatctgctctct
gacgagtccaacttcaactcattcagtctcaccgcgctggacctgggtcagtacatgagg
ctggacaatgctgcagtgagggctctcaacctcttccagggatcaccggacgacaccagc
ggagctcattccctggccggcctgctgaacaagtgtcgcaccccgcagggccagcggctg
gtcaaccagtggatcaagcagccgctcatggacaaaaccaaaatagaggaaaggctggac
ctggtggagagcttcgtttgtgactcggagctcaggcagacctgtcaggaggacttgcta
cggcggttcccggaccttcaccgcctggccaagaagttccaccgttactcggcgtcactc
caggactgctttcgcgtctaccaggccgtgagccacgtcccggccctcgtctcggccctg
gagagatactcgggtagctaccaggttctgttggatgcggcgttcatctctcctctcaga
gacctgcaaacggactttgttaagtaccaggagatgatcgaaaccacgctggacatgaac
cagattgaccaccatgagttcctggtgaaggcttcattcgacccagcgttgagtgagctg
agagaaaacatggacgctctggaaaagagcatgcaggcggtgctcagtggtgcagccagg
gaactaggtctggacgccggtaagacggtgaagctggagtccaacgccatgctgggcttc
tacctgagagtcacctgcaaggaggagaagagcctgaggaacaacaagaaattcaccacc
ctggacgtccagaagaacggagtgcgcttcaccaacagcaagctgagctccctgaatgag
gagtacacaaagaaccgagcggagtacgaggaggcccagaacgccatcgtcaaagagatc
atcaacatcgcctcaggctacgtggatcctctccagacgctgagcgacgtgacggcgcag
atggacgcggtggcgagcttcgccgtggcgtccgtgtcggctcccgtgccgtacgttcgt
ccccggctggtggcggacggccgcaggcgcgtggagctgcggcaggccagacacccctgc
atggagacggacgcagacactgccttcatacccaacgacgtgtccttcgcccagggagag
aaggacttctatatcatcacgggaccaaatatgggtggcaagtcgacgtttatccgtcaa
gtgggggttattgctctgatggctcagatcggctgcttcgtgccgtgcgaaaaggcggag
cttagcgtgattgacagcatcctggccagggtgggagcgggagacagccaggtcaaagga
gtgtccacattcatgtctgagatgctggagacggctgccatcctgcgctcggccacggag
aactcgctcatcataatcgacgagctcggcagaggcacgtccacatacgacggcttcggc
ctggcgtgggccatcagcgaacacattgcctccgaaatcggctgcttctgtctgttcgcc
acccacttccacgagctgacggcgctggcagcgcagcggcccgccgtccacaacctgcac
gtcacggccctgacctcccacgacacgctcactatgctgtaccgcgtcaaatcaggtgtg
tgcgatcagagttttggaatccacgttgccgagttggcgtgcttcccgccatcggtgatc
gctgtggcgaaggagaaggcggaggagctggaggagttccaggagcctgcgggggagaag
tctgagcaggaggaagagcctgaggccaagcgacggcgcacagacagacaagtgggggag
aacctgatccaagacttcctggagaaagctaaatccctccctgctgccaccatgagtgaa
gaagaggtgaaggacgccctcaggaaaatgaagcaggagcttgtcgccaaaaacaacacg
tatataaaagagatcctttcacgctgtgttcctgcaaaaacagcttga
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