Gasterosteus aculeatus (three-spined stickleback): 120819451
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Entry
120819451 CDS
T07457
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120819451 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120819451 (dhx36)
03012 Translation factors [BR:
gat03012
]
120819451 (dhx36)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120819451 (dhx36)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120819451 (dhx36)
Translation factors [BR:
gat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120819451 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NB-ARC
DnaB_2
NPHP3_N
AAA_16
HerA_C
Motif
Other DBs
NCBI-GeneID:
120819451
NCBI-ProteinID:
XP_040032823
LinkDB
All DBs
Position
I:complement(10958735..10974034)
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AA seq
1063 aa
AA seq
DB search
MSSGYGGRGGRRGRGGGRGYRDGSRERSDRRGGGGSSGHGNDFDKDQGGGERLDRPPPHL
KGREIGLWYAKFGAVRRKQGDRRSRAVVQMDEAREQHITKLLSSVQSDRPGPWRDYNDIR
ASTSNSRPTAARSSGHCYFDGEMSEEDKQKIELKSEEEEEDVTAGQKTSQRHFPRAAVKD
EAPDAWDEEEQQEKEEKEMLRRKDKDLDFLFQEVARDNSLDERLERDLQSKKSDTKYKEM
LKFREKLPSYGKKEELVELINSNRVLVVSGETGCGKTTQVTQFILDDYINRGVGSVCRVV
CTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRKQGSILYCTTGIILQWLR
SDPLLSTISHLVLDEIHERNLQSDVLLVIVKNILTLRDDLKIILMSATLNAEKFSKYFNN
CAMIHIPGLTFPVEEFLLEDIVEMTRYSPQNQDRRPSRKRGFWQGRNSRPEKEEKEAEYK
ESWPTYARTLQGRYSDNTIETLEMLDDDDKIDLELILALIRHIVLKEEDGAILVFLPGWD
NISGLNDLLVAQEMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAETSIT
IDDVVYVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVCPGKCYHLYNGLR
ASLLDAYQLPEIMRTPLEELCLQIKILKLGSIAQFLEKSLDPPTTKAINLAIKNLTGLNA
LDRSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEK
MADMRRRTLSRNSKSDHLTIVNAFQGWEEAKHSGARYEREYCWDNFLSANTLQMLHNMKG
QFAEHLMHTGFISSRDPKDPKSNVNSDNEKLIKAVIVAGLYPKVATIRPSRCKKAGVKAY
TQADGKVVIHPKSVNAEETEFNYTWLVYHLKMRTSSIFLYDCTEVSPFSLLFFGGDITIQ
KDEDQETIAVDQWIVFRSPARIAHLVKSLKKELDSLLEEKIRNPAPVDWQDRQSKDCAVI
TAIIDLITTQEKPTGGAKGYGQTWASAPRGQHTRFDDEDDEDD
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggatatggcggtcgaggagggagaagaggcagaggaggaggtcgaggatac
agagatggaagcagagaaagatcggacagaagaggcggaggagggtcgagtggacacggt
aacgacttcgacaaggaccaaggcggaggtgaacgactggaccgccctccgcctcacctg
aagggacgtgagattggactgtggtacgcgaagttcggcgccgtgaggaggaagcagggg
gaccggagatcgcgggcggtggtccagatggatgaggccagagaacagcatattaccaag
ctgctcagctctgtccaaagtgatcgccctggtccatggagagattacaacgatatcaga
gcctctacgtctaacagccggcctacggctgcaagaagcagcggtcattgttactttgac
ggggaaatgtctgaagaggataaacagaagattgagttgaaatctgaggaagaggaggaa
gacgttacagcaggccagaagacatcgcaacgtcacttcccccgtgcagctgttaaagat
gaggctccagacgcgtgggatgaagaagagcagcaagaaaaggaggaaaaagagatgctg
aggaggaaggacaaggacctggatttcctattccaggaagtagccagagacaactcactt
gatgaacgcttagagagagatcttcagagcaagaaatccgataccaagtacaaagaaatg
ctgaaattcagagagaaactaccatcttatggcaaaaaagaggagctggttgagcttatc
aactcgaaccgtgtgctggtggtgagcggggaaactgggtgtggaaagaccactcaggtt
acccagttcatcctggatgactacatcaacagaggcgttggctccgtgtgtcgtgtggtc
tgcacgcagccgcgtcgcatcagtgccatctcggtggcggagcgtgtagcagccgaaaga
gcagaaagtgtaggaaatggaaattcttgtggttaccaaatccgactgcagagccggtta
ccacggaaacaaggttcaatcctgtactgtacgacaggcattattcttcagtggcttcgc
tcagacccgttattgtccaccatcagccatctggtgttggacgagatccacgagaggaac
ctgcaatctgacgttttgctcgtcatcgtgaagaacatactcacccttcgagatgacctc
aagatcatactcatgagtgccacgctcaacgcagagaagttttccaaatatttcaacaac
tgcgcaatgatccacatccccggtctgacgttcccagtcgaggagttcctgctcgaggac
atcgtggagatgactaggtattctccccagaatcaggaccgccgcccgtcaaggaagaga
ggcttttggcaggggcgcaactccaggcctgagaaggaggagaaagaggcggagtacaag
gagagctggcccacttatgcacgcacgctgcagggcagatactctgacaacactatcgag
acactggagatgttggacgatgacgacaagattgacctggagctgatcctggctctgatt
cgccatattgtgctcaaagaggaggacggagccatcttggtcttccttcctggctgggac
aacatcagcggtctcaacgacctactggtggctcaggagatgttccgatcagaccggttc
gtgatcatccctttgcactccctcatgcctacggttaaccagacgcaggtgttcaaaaga
ccgcctccgggagttagaaagattgtgattgctaccaatatagcagagaccagcatcacc
atagatgacgtcgtttacgtgattgatggaggcaagatcaaggagaccaactttgacacc
aacaacaacatcagcaccatgacggcggagtgggtgagcctggccaacgccaaacagagg
aaggggcgcgctggcagagtgtgtccagggaagtgctatcacctgtacaatggcctcagg
gccagcctgctggacgcttaccaattacccgaaatcatgaggacaccactggaggagctc
tgcctgcagatcaagattttgaagctcgggtccatcgcgcaattcctggagaaatccctg
gacccccccactacaaaggccatcaacctggccatcaagaacctcacgggcctgaacgcc
ctggaccgttcagagaacctgacggcgctgggtttccacctggctcgcctgcccgtggag
cctcacattggcaaactcatcctgtttggagctctgctgggctgcctcgaccccgtcctg
accatcgccgcttcactcagcttcaaagaccctttcttcatccccctgggcaaagagaag
atggcggatatgaggagaaggaccctgtccagaaactccaagagtgaccacctcactatc
gtcaacgccttccagggctgggaggaagccaaacacagtggagccaggtacgagagggag
tactgctgggacaacttcctgtccgccaacacactccagatgctgcacaacatgaagggt
cagtttgctgagcatcttatgcatacaggctttatcagcagcagggatcccaaagacccc
aaatccaatgttaattcagacaatgagaagttgatcaaggcggtgattgtagccggtctg
tacccgaaggtggcaacgatcagaccttcccgctgcaagaaggccggggtcaaggcgtac
acccaagctgatggaaaggtggtcatccacccgaagtcggtcaacgccgaagagacggag
tttaactacacgtggctcgtctaccacctcaagatgagaacgagcagtatcttcctctac
gactgcaccgaggtgtccccgttctcgctgctgttcttcggcggagacatcaccatccag
aaggacgaggaccaggagaccatcgccgtcgaccagtggatcgtcttcaggtccccggcc
cgcatagctcacctcgtcaaaagcttaaagaaagagctggattctctgctcgaggagaag
atccgcaaccccgctcccgtggactggcaagaccgccagtccaaagactgtgccgtcatc
acggccatcatagacctcatcaccacccaggagaagcccaccggcggcgccaagggctac
ggccaaacgtgggcgtcggccccgagaggacagcacacccgcttcgatgatgaggacgac
gaggacgattag
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