Gasterosteus aculeatus (three-spined stickleback): 120820205
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Entry
120820205 CDS
T07457
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04517
IgSF CAM signaling
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120820205 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120820205 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
gat04812
]
120820205 (sptbn1)
Cytoskeleton proteins [BR:
gat04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
120820205 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
120820205 (sptbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
DYH2-5-8_CC
DUF2680
PH_11
SOS1_NGEF_PH
CH_2
SCAR_helical
DUF8074
Motif
Other DBs
NCBI-GeneID:
120820205
NCBI-ProteinID:
XP_040033649
LinkDB
All DBs
Position
6:16055473..16101522
Genome browser
AA seq
2352 aa
AA seq
DB search
MELQSAAAGLPGPLSPALDYAGPSHATSPIGGPGPGFSGQAAFNYNQLEGRFKQLQDERE
AVQKKTFTKWVNSHLSRVSCRITDLYMDLRDGRMLIKLLEVLSGEKLPKPTKGRMRIHCL
ENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDISVETEDNKEKK
SAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAIIHKHRPDLIDFDKLKKSNAHHN
LQNAFNLAEQHLGLTKLLDAEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEGKRIGKV
LDNAIETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKP
PKFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEHERELALRTE
LIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAA
YEERVQAVVSVAKEMESENYHDIKRITARKDNVIRLWEYLLELLKARRQRLELTLGLQRV
FQEMLYIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEADISIQADRVRNVNRNAQK
FADDMDGYKPCDPQIIRDRVAHMDFCYQELSQLAAERRGRLEESRRLWKFFWEMAEEEGW
IREKEQILSSEDYGKDLTGALRLLSQHKAFEDEMSGRAAHLQQTIKQGEELVANNHFGAD
KIKERILDIQEQWAALERLSAVRKARLQEACNQHQFQADADDIDTWMLDVLRIVSSVDVG
HDEFSTQALVKKHKDVAEEIGSYRPVIEALHEQSGTLPPEKAKSEEVQSRLAGIEERYKE
VVELTRLRKQALQDALALYKMLSEASACEVWIDEKEQWLNSMDIPEKLEDLEVVQHRFES
LEPEMNNQASRVAVVNQVARQLIHCGHPSEKEIKTQQDKLNTRWSQFRDLVDQKKDGLSS
ALGVQNYHLECNETKSWIKEKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEDKLG
DLGKEADRLASEHPDQSEAIRGRLAGITAVWDEMKDTMKNREESLGEASKLQQFLRDLDD
FQSWLSRTQTAIASEDMPNTLAEAEKLLAQHENIKNEIRNYEEDYQKMRDMGETVTQGQT
DAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLA
HTEMPTTLEAAEAAIKKQEDFMTTMDANEEKIGGVVDTGRRLVTDGNINAERAQEMVDSI
DQRHKKNRAAASDLLTRLKDNRDLQRFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKW
LKHQAFMAELQSNKEWLDKIDKDGQALMAEKPETEAMVKEKLSSLKTMWQELESTTQAKA
KCLFDANKAELFTQSCADLDKWLAGLDGQLQSDDYGKDLTSVNILLKKQQILESQVEVRQ
KEVGELQGQSQALSQEGKGSDEVDGQRISVEQKFQSLQDPLKKRRDNLMASREIHQFNRD
VEDEILWVEERMPLATSTDHGNNLQTVQLAIKKNQTLQKEIQGHQPRYDDIFQRSQHVLR
ENGPTAELIRQRLAELQSLWEQIRKETEKRHTRLSEAHEAQQYYFDAAEAEAWMSEQELY
MMSEEKAKDEQSSVAMLKKHQILEQAVEDYADTVHQLSSTSRGLVAAEHPDSERIGMRQS
QVDKLYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVT
MLQERFREFARDTGNIGQERVDTVNQQADELINTGHGDAATIAEWKDGLNEAWADLLELI
DTRTQILAASFELHKFYHDAKEILHRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQ
ALGTQVRQLQEDAVRLQSAYAGDKADDIQKREGERRKGEVLEAWKNLLEAAEGRRVKLVE
TGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTA
CIELGKALLARKHYASEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRDAGVA
EAWLLGQDPYLFSREMGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRR
MQEEEEKRRQPPPTEAQPGDAAAQHREGELVSQNGLPSDQESTRDNVDGGEAVNGTSEPS
PSGSPGGSRKGKASQAATLPAKSQAEAPTSQLEGFLHRKHEWEGHNKKASSRSWHNVYCV
INQQEMGFYKDQKSAGQGIPYHSEIPVTLKDAICEVALDYKKKKHVFKLKITDGNEYLFQ
AKDDEEMNTWLSAISTAMTGEKSEVTPSSHSTPAPAARAQTLPASVAAAAESSPGKREKD
KEKRFSLFSKKK
NT seq
7059 nt
NT seq
+upstream
nt +downstream
nt
atggagctccagagcgccgccgccggcctccccgggcccctctccccggccctggactac
gccggcccgtctcacgccaccagccccattggggggcccggccccgggttctcgggccag
gctgccttcaactacaaccagctggagggccggttcaagcagcttcaagatgagcgtgag
gcggtgcagaagaagaccttcaccaagtgggtgaactcccacctgtccagagtctcctgt
cggatcaccgacctctacatggacctgagggacggacgcatgctcatcaaactgctggag
gtcctgtccggagagaaactgcccaaacccaccaagggtcggatgaggatccactgcctg
gagaacgtggacaaggctctgcagttcctgaaggagcagagggtccacctggagaacatg
ggctcccacgacatcgtcgacggcaaccaccgcctggtcctgggcctcatctggaccatc
atcctccgcttccagatccaggacatcagcgtggagacggaggacaacaaggagaagaag
tcggccaaagacgctctgctgctctggtgtcagatgaagacggcggggtatcccaatgtc
aacatccacaacttcagcaccagctggagggacgggatggccttcaacgccatcatccac
aaacacagaccggacctgatcgactttgataagctgaagaaatcaaacgctcaccacaac
ctgcagaatgcgttcaacctggctgaacaacatctgggcctcaccaagctgctggacgct
gaggacatcagtgtggaccacccggatgagaagtccatcatcacctacgtagtgacctac
taccactacttctccaagatgaaggcgctgaaggtggaggggaagcgaatcggcaaggtt
ctggacaacgccatcgagacggagaagatgatcgagaagtacgagtctctggcgtccgac
ctgctggagtggatcgagcagaccatcatcatcctcaacaacaggaagtttgccaactct
ctggtgggagtccaacagcagctgcaggccttcaacacttaccgcacagtggagaaaccc
cccaagttcacggagaaggggaacctggaggttcttctgttcaccatccagagtaagatg
agagccaacaaccagaaggtttacactcctcgagagggcaaactcatctccgacatcaac
aaggcatgggagcgtctggagaaggcggagcacgagcgggagctggctctgaggacggag
ctgattcgtcaggagaagctggagcagctcgcccggcgcttcgaccgcaaagccgccatg
agggagacgtggctgagcgagaaccagcggctggtctcccaggataactttggatttgac
ctccaggccgtagaggctgctactaagaaacatgaagccatagaaacggacatagcagcc
tacgaggagcgagttcaggcggtggtgtccgtggcgaaggagatggagtctgagaattac
cacgacatcaaacgcatcacggccaggaaggacaacgtgatccgactgtgggagtacctg
ctggagctgctgaaggcccgcaggcagaggctggagctgaccctgggcctgcagagagtc
ttccaggagatgctctacatcatggactggatggacgaaatgaagatgatgctgctctct
caggactacgggaaacacctgctgggtgtggaggacctgctgcagaaacacgccctggtg
gaggccgacatcagcatccaggccgaccgagtccgaaacgtcaaccgcaacgctcagaag
tttgccgacgacatggacggttacaagccctgtgatcctcagatcatcagggatcgggtc
gctcacatggatttctgctaccaggagctgagtcagctggcggctgagcggaggggtcgc
ctcgaggagtcccgccgcctctggaagttcttctgggaaatggccgaagaggagggctgg
atcagggagaaggagcagatcctctcctccgaggattatgggaaggatctgacgggagcg
ctgcgtctgctgagtcagcacaaagccttcgaggacgagatgagcgggcgagccgcccac
ctgcagcagacgatcaaacagggcgaggagctggtggccaacaaccacttcggagccgac
aagattaaagagcgcatcctggacatccaggagcagtgggcggctctggagcggctctcc
gccgtccgtaaagctcgtctgcaggaggcctgcaaccagcaccagttccaggccgatgcc
gacgacatcgacacgtggatgctggacgtgctgcggatcgtctccagcgtggacgtcggc
cacgacgagttctccactcaggctctggtgaagaaacacaaggacgtggccgaggagatc
ggaagctaccggcccgtcatcgaggcgctgcacgagcagtccggcacgctgccgcccgag
aaggccaagtccgaggaggttcagagccggctggcgggcatcgaggagcgctacaaggag
gtggtggagctgacgcgcctccggaagcaggcgctgcaggacgccctggcgctctacaag
atgctgagcgaggccagcgcctgcgaggtgtggatcgacgagaaggagcagtggctcaac
agcatggacatccccgagaagctggaggacctggaggtggtgcagcaccggttcgagagt
ctggagccggagatgaacaaccaggcgtcccgagttgccgtggtgaaccaggttgctagg
caactgatccactgcggacatcccagtgagaaggagatcaaaacccagcaggacaaactc
aacaccaggtggagtcagttcagagacctggtggaccagaagaaggacggtctgagctcc
gctctgggagtccagaactaccacctggagtgtaacgagaccaagtcctggatcaaagag
aagaccaaggtgatcgagtccacccaggagctcgggaacgacctggccggcgtcatggcc
ctgcagaggaagctgacggggatggagcgcgacctggccgccatcgaggacaagctgggc
gacctggggaaggaggcggaccgcctcgcctcggagcacccggaccagtcggaggccatc
agggggcgtctggccgggatcaccgccgtctgggacgagatgaaggacaccatgaagaac
cgggaggagtctctgggcgaggccagcaagctgcagcagttcctgcgcgacctggacgac
ttccagtcgtggctgtcccgcacgcagacggccatcgcctccgaggacatgcccaacacg
ctggccgaggccgagaagctgctggcccagcacgagaacatcaagaacgaaatccgcaac
tacgaggaggactaccagaagatgcgggacatgggcgagacggtgacgcagggccagacg
gacgcgcagtacatgttcctgcgccagcggctgcaggcgctcgacaccggctggaacgag
ctgcacaagatgtgggagaatcggcagaacctgctgtcccagtcgcacgcttaccagctg
ttcctcagggacaccaagcaggccgaggccttcctcaacaaccaggagtacgtgctggct
cacaccgagatgcccaccactctggaggctgccgaggccgccatcaagaagcaggaggac
ttcatgaccaccatggacgccaacgaggagaagatcggcggcgtggtcgacaccgggcgg
cgcttggtaaccgacggcaacatcaacgcggagcgcgcccaggagatggtggactccatt
gaccagagacacaagaagaaccgagcggccgccagcgacctgctgaccaggctgaaggac
aacagagacctgcagaggttcctgcaggactgccaggagctgtccctgtggatcaacgag
aagatgctgacggcccaggacatgtcctacgacgaggccaggaacctccacagcaagtgg
ctcaaacaccaggccttcatggccgagctgcagtccaacaaggagtggctggacaagatc
gacaaggacgggcaggcgctgatggcggagaagccggagacggaggccatggtgaaagag
aagctgtcgtccctgaagaccatgtggcaggagctggagtccaccacccaggccaaggcc
aagtgtctgttcgacgccaacaaggcggagctcttcacccagagctgcgccgacctcgac
aagtggctggccggcctggacgggcagctgcagtccgacgactacggcaaagacctcacc
tccgtcaacatcctgctgaagaagcagcagatcctggagagccaggtggaggtgcgtcag
aaggaggtgggggagctgcagggccagtcgcaggccctcagccaggaggggaaaggctcc
gacgaggtggacggccagaggatcagcgtggagcagaagttccagtccctccaggacccg
ctgaagaagagacgagacaacctcatggcctcccgcgagatccaccagttcaaccgggac
gtggaagacgagatcctgtgggtggaggagaggatgcctctggccacatccaccgaccac
ggcaacaacctgcagaccgtacagctggccatcaagaagaaccagaccctgcagaaggag
atccagggccaccagccgcgctacgacgacattttccagcgcagccagcacgtcctgagg
gagaacggccccacggccgagctcatccgccagcgcctcgccgagctgcagtcgctgtgg
gagcagatcaggaaggagacggagaagcgccacacccgcctcagcgaggcccacgaggcc
cagcagtactacttcgacgccgccgaggccgaggcctggatgagcgaacaggagctgtac
atgatgtcagaggagaaggccaaggacgagcagagctcggtggccatgctgaagaagcat
cagatcctggagcaggcggtggaggactacgcagacaccgtccatcagctgtccagcacc
agccgcggcctggtggccgccgagcaccctgacagcgagcggatcggcatgcgtcagtct
caggtggacaagctgtacgccgggctcaaggacttgtcggaggagcgtcgggggaagctg
gacgagcgcttgcgtctcttccagctgaaccgggaggtggacgacttggagcagtggatc
gctgagcgggaggtggtggccggatcccacgagctgggacaggactacgagcacgtcacc
atgctgcaggaacgcttcagagaatttgcccgcgacaccgggaacatcggccaggagcgc
gtggacaccgtcaaccagcaggcggacgagctgatcaacaccggccacggcgacgccgcc
accatcgccgagtggaaggacggcctgaacgaggcctgggccgacctgctggagctcatc
gacacccggacgcagatcctcgccgcctcctttgagctccacaagttctaccacgacgcc
aaggagatcctccaccgcatcctggacaaacacaagaagctgccggaggagctgggccgc
gaccagaacacggtggagacgctgcagaggatgcacaccaccttcgaacacgacatccag
gccctgggaacgcaggtgcggcagcttcaggaggacgccgttcgcctgcagtccgcctac
gctggagataaagccgacgacattcagaagcgagaaggagagaggagaaagggagaggtc
ctcgaggcctggaagaacctgctggaggcggcggagggccgccgggtgaagctggtcgag
accggagacaagttccgcttcttcagcatggtgcgcgacctgatgctgtggatggaggac
gtcatccgcctgatcgaggcccaggagaagcccagggacgtgtcgtctgtggagctgctg
atgaacaaccaccagggcatcaaggcggagatcgacgcccgcaacgacagcttcaccgcc
tgcatcgagctgggcaaagccctgctggccaggaagcactacgcgtcagaggagattaaa
gagaagttgttacagttgacggacaagaggaaagacatgattgacaagtgggaggacaga
tgggagtggctgcgactggtcctggaggtgcaccagttctcccgggacgccggtgtggcc
gaggcctggctgctgggtcaggacccctacctgttcagcagggagatgggccagagcgtg
gacgaggtggagaaactcatcaagcgccacgaggccttcgagaagtcggccgccacctgg
gaggaacgcttctccgctctggagcggctgaccacgatggagttattggaagtgcgaaga
atgcaagaggaagaagagaagaggagacaacctccgcccactgaggctcagcccggcgac
gctgcagctcagcacagggagggcgagctggtgtctcagaacgggctgccgtccgatcag
gagtctaccagggacaacgtggacggcggggaggcggtgaacgggacgtcggagccgagc
ccctcggggtctcccggggggtctcgcaagggcaaggccagccaggcggcgaccctgccg
gccaagtcccaggcggaggcccccacgtcccagctggagggcttcctgcaccgcaaacac
gagtgggagggacacaacaagaaggcttccagcaggtcgtggcacaacgtgtactgtgtg
atcaaccagcaggagatgggcttctacaaggatcagaagagcgccggtcaggggattccc
taccacagcgagatccccgtcaccctgaaggacgccatctgcgaggtggcgctggactac
aagaagaagaaacacgtcttcaagctcaagatcactgatgggaatgagtatctcttccaa
gccaaagatgacgaggagatgaacacgtggttatcggccatctcgaccgccatgacgggc
gagaagtcggaggtgactcccagcagccacagcacgccggccccggccgcacgcgctcag
acgctgccggcctccgtcgccgcggcagcagagtccagcccgggcaaacgagagaaagac
aaggagaaacgcttcagtctgttcagcaagaagaagtag
DBGET
integrated database retrieval system
