Gasterosteus aculeatus (three-spined stickleback): 120820500
Help
Entry
120820500 CDS
T07457
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120820500 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120820500 (vps8)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120820500 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
TPR_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
zf-RING_UBOX
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
FAR1_N
Beta-prop_IFT122_1st
Beta-prop_WDR5
PHD_4
zf-C3HC4
SLX1_C
zf-C3HC4_2
Beta-prop_EML_2
DUF1841
Beta-prop_HPS5
zf-rbx1
zf-C3H2C3
WDR55
Beta-prop_WDR3_1st
PHD
EIF3I
Motif
Other DBs
NCBI-GeneID:
120820500
NCBI-ProteinID:
XP_040034283
UniProt:
A0AAQ4QY06
LinkDB
All DBs
Position
6:1409710..1436522
Genome browser
AA seq
1407 aa
AA seq
DB search
MSESPDARSLLSASSQLNLTEMDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CLLNTDNMDAHSCDTSSLASSDSGDPAHLKRRRRTVDLNAAAHGSVLRHGLLKGISAQIV
SAADKVDAGLPTAITVAGVIAVGTSHGLALVFGKDTNQALRLCLGTKATGAEFGAVSALS
INHDCSRLLCGFAKGQITMWDLASGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELSFRRVMGMRSCDSRCLFSGSKGEVCCIEPLRAPPDFRDHPITLYSLLAMASLTKI
LVIGLKPSLKVWMTLPYSKSDPASVPQLAWQFVPVQKTVNPILAFCKGDSVHFLLVKQEE
TGTIHVIKQKQLHLSCDIISLSWINSRTLLLVDSREKLQVVDRPSQEVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSVSSYGGQIVYLGTKSAHIMTLRNWRERIDC
LLKQEHFVEALSLAWSFHEGAAKAVVGLLGDQMKKKGVVGDKMVEILFQFADHALKKCPE
QGKIQVMEQHFHEVVPVLVDYCLLLKRADLMFNQLYAQLGENTVAKGVFLESLESYIVAD
RLGHLTTPIMRDLLAHYHSNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVF
NSGMNDYITPMEKLFAVIGPKLRAGRSLKDEEVVMGNKILVYISCCLAGRAYPLGDIPED
LVVQVKNQVFEFLIRLHSADSLEEEEVFPFIRTLLHFDSREFLNVLAMTFEDFKNDKQAL
EYQQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCGP
DDDCRHTERQQVLLELLQVGGVVQFNEGRLLTLAEKAKFYQICELLYEKKHSYDKIIDCY
LRDPLRKEEIFSYIHNLLSMPGYGPEEKQTVRDKALQHIQELVTLDPSKSADLVVFHFAN
EVQQIISKLQDDQLLFQFLRCLLETRQGPHLGTTLALEQDLHELLLDLTCRFGPEQLLRF
LHTSQHYRLEEATQITQKYHLNEATAYLLEKKGDVHGAFAVLLERLKETLSRLTAESERK
ADGGEGRWDEEEGDGASSLTRVKDSLNDIIVLCHRNSDSFYQQQREVLWFPLLETMMASQ
KRVKGLNDDHTFEVLKELTMKVLNCMSSFISLPAIIQRILRDPVYGKGKLAEIQGLILGM
LDTFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDFCNICLQQYKRRLDSAEE
IIVFSCGHLYHYQCLQQKDSAWGSTAELPQRWSCYKCSSSQGGRGGPSSEPQRGRSTSLA
QTRVTSLHHDAGAEARRRKVFVNTTLDLQQQQSWDQLRCLYRGPSRLSILTELSHCHSSD
KTGLLTAAQTGPDHFTLKLSPPPLLEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctccggacgcccgcagcctcctctccgcctcctcgcagctcaacctgacg
gagatggacgcgatcgatgataaggagtttgacattccccaagtagacacacctcccact
ctggagagcatccttaacgagctggaggatgaggaggagccttttgtgttggaggatacc
tgcctgctaaacaccgacaacatggatgctcactcctgtgacacctcctctctggccagc
tctgacagcggagaccccgcgcacctcaaaaggaggaggaggaccgtggatctgaatgcc
gccgctcacgggtctgttctccgacacggcctgctgaagggcatctctgcacagatcgtg
tccgctgctgacaaagtggacgctggactgccaacggctataacggtggccggtgtgatt
gcagtggggacatctcacggtctggctctggtcttcggaaaagataccaaccaggctctg
cggctctgtctgggtaccaaggcaacgggggcggagtttggagccgtctccgccctcagc
atcaaccacgattgctcgcggctcctctgcgggttcgccaaagggcagatcacaatgtgg
gatttagccagtgggaagctcctgagaaccatcactgatgcacacccgccggggacggct
atactgcacgtgaagttcacagacgacccgactcttgcagtgtgcaacgacagtggaggg
tccgtctttgagctgtcgttcaggagggtgatggggatgcggtcctgtgactcccgatgt
ctcttcagtggttcgaaaggagaagtgtgctgcattgagccgctgcgggctcctccagac
ttcagagaccaccccatcaccctgtactcgctgctggccatggcctctctcaccaagatt
ctggtcattggactgaagccgtctctgaaggtctggatgactctgccctacagcaagtcg
gatccggccagtgttcctcagctcgcctggcagtttgttcccgtccagaagaccgtcaac
ccaatcctggctttttgtaaaggagattcggtccacttcctcctggtgaagcaggaggag
acggggaccatccatgtcatcaagcagaaacaactccacctaagctgtgacatcatcagc
ctcagttggatcaacagtcgtacgctgctcctggtggacagccgtgagaagctgcaggtg
gtggaccggcccagtcaggaggtgttggagacactggacttggagcaggtgcagctggtc
tataacagccgacatttcaaatcgctggcaactggagggaacgtctcccaagctctggcc
ttagtgggggaaaaggcctgctaccagtccgtgtcgagctacgggggacaaatagtctat
ctgggcaccaagtcggctcacattatgaccctgaggaattggagagagcgcatcgactgc
ctgctgaagcaggagcatttcgtggaggctctctctctggcctggtccttccacgaggga
gcggccaaagctgtggtcggcctgttgggcgatcaaatgaaaaagaagggagtcgtaggt
gacaagatggtagagatccttttccagtttgcagaccacgcgttgaagaagtgtccagaa
caaggcaagatccaagtgatggagcagcacttccatgaggtggttcccgtcctggtggat
tactgcctgctgctaaagagggccgacctgatgttcaaccagctgtatgctcagctgggg
gagaacacggttgctaagggcgtctttctggagtcactggagtcgtacattgttgcggac
cgtcttggtcacctcaccacgcccatcatgagggacctcctggcccattaccatagcaac
ggtatgatggacagcctggagagatgcatagtccatctggatgtgaccagtctggacatt
cagcaggtggttcaagtgtgttgggagaaccagctctacgatgcaatgatctacgtcttc
aacagcggcatgaatgactacattacaccgatggagaaactctttgcagtgattggccca
aaacttagagcggggaggagcctaaaagacgaggaagtggtgatgggaaacaaaattctg
gtgtacataagctgctgtctggcaggaagggcgtatccactgggagacatccctgaagat
ctcgtggttcaagtcaagaaccaggtgtttgagttcctcatccgtctccattcggccgac
tcgctggaggaggaggaggttttcccgtttattcgcacactcctccactttgattctcgc
gagttcctcaatgtcctcgccatgacttttgaagactttaagaatgacaaacaggccttg
gagtaccagcagaggatagtggacatcttacttcaggtgatggtggacaacccagacttt
actccatcccaggtgggcgggctcttcacgtttctggctcgccagttggccaagccagac
aacacgctttttgtgaacaggaagctctttgatcaggttctggagttcctgtgtggtcca
gacgatgactgtagacacactgagcggcagcaggtcttgctggagctgctgcaggtgggg
ggggtggtccagttcaatgagggccggctgttgactctggcagagaaggccaagttctac
caaatctgtgaacttctttatgaaaagaaacattcatatgacaagatcattgactgctac
ctgagagaccccctcagaaaggaggagatcttcagctacatccacaacttgctgtcgatg
cccggctacggccccgaggagaagcagacggtccgggacaaagcgcttcagcacatacag
gagctggtgacccttgaccccagcaagtctgctgacctggtggtttttcactttgccaac
gaggtgcaacaaatcatcagcaagcttcaggatgaccaactgctcttccagttcctcaga
tgcctcctggaaacacggcaaggccctcacttggggaccaccctggctctggaacaggac
ctccatgagcttctgctggacttaacgtgccgctttggccccgagcagctcctgcgcttc
ctccacacctcccagcactacaggctggaggaggccacgcagattacgcagaagtaccac
ctcaacgaggctaccgcatatctgctggagaagaagggagacgttcatggagcgtttgct
gtcttgttagagagactgaaggaaacactaagtcgcctcacggctgagagtgagaggaaa
gctgatggaggagaaggaaggtgggatgaagaggagggagacggtgcatcctcactgacg
cgagtaaaggactcgctgaatgacatcattgtcttatgtcatcggaactctgacagcttc
taccagcagcagagagaggttttgtggtttccacttctggagaccatgatggcgtctcaa
aagcgagtgaaggggctcaatgacgatcacacgtttgaggtgctgaaggagctcacaatg
aaggtgctcaactgtatgagcagctttatctccctgcctgccatcatccaacggatactg
agggaccccgtctatgggaaagggaagctggcagagatccaaggcctcatcctgggcatg
ctggacacgtttaactatgaacagactttacttgaaacaaccactagtcttctgaatcat
gacctccattggtccctcgctcacctgcgcgctgccgtcacaaggggacttcacccgcga
caagacttctgtaacatctgcctccagcagtacaagaggaggctggactctgctgaggag
atcattgtgttcagctgtggccacctgtaccactaccagtgcctgcagcagaaggactcc
gcctggggttcgactgcagagctgccacagcgctggagctgctacaaatgctcctccagc
caaggggggaggggcgggccttccagcgagccgcagagaggccgcagcacgtccctggca
cagacccgcgtgacatcactgcaccatgacgcaggagcagaggctcgcaggaggaaggtg
tttgttaatacaacgttggaccttcagcagcaacagtcctgggatcagctgcggtgttta
taccgaggaccatccaggttgtccatcctcacagaactctcccactgccacagcagtgac
aagacggggcttctgacggcagcccaaaccggaccggatcatttcacactcaaactgtcc
cccccacccttactggaggagtag
DBGET
integrated database retrieval system
