Gasterosteus aculeatus (three-spined stickleback): 120820612
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Entry
120820612 CDS
T07457
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120820612 (zswim8)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
120820612 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
120820612
NCBI-ProteinID:
XP_040034501
LinkDB
All DBs
Position
VI:1155241..1173548
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AA seq
1954 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVTSQSGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPCRRLELAGQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEGAY
PLDGITYCSADRKSATFCWSRAVQHQRGVKAAAGLGGEPPEPGGGGRADGGAGGDYKGRG
HSSQQEVAVRPKETVLTKRKGLSVSGGGGMLVRLGGGVSLSLEDGGGKCVYKGPGSSSGG
KLKLPPGGGKGASVGGAGGGGGMGGGKHAGTKRRTSSEDSSLEPDLAELSLDDGCSLALG
VEASNTFEFLPLPPEMLPSPSSLLRDSRKYSNGNSSGGGKTFEAKRVGHASAGAPAVEPA
PPHTVLVVMDTPSAVERDGALVAAPVNSKDEDVDSAGSNQPSASTSAVRSAATPPSAKLQ
RARREAAPAGAASAAAAAAAARGPANQGAEAAGGEAVGEDDYQAYYLSAASEEGADRQLA
DNHQEEEPDIFAGMKPLEQEGRMEVLFACAEALHAHGYSNEACRLAVELARDLLANPPDL
KVEQPQTKGKKSKVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRP
PASTKALEVKLAYQESEVVSLLKKIPLGLVEMTAIRERGEQLRDGNFCDYRPVLPLMLAS
FIFDVLCTPVCAVVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLC
EGTRRVKGDLALALMITYKDDHSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAAGSQRS
PSKHAAAGHSSASAGVSRHAPPSSSAATASSASAAAPVSDASTSQAHLNAAQNNSTAGES
AAETRERAAEGPPPSGEQQNEAAPFKEATVPSRLALGARCGYNQRCWGSPVRQKKKHTGM
ASIDSSAPETTSDSSPTLSRRPLRAGWAATSWGRGQDSDSISSSSSDSLGSSSSSGSRRA
GGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQ
PSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAAL
NILVECWDGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQ
CKEQDNMMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGSGPQRETSGRCG
ANGGSGRRPLETSCVVLDAGGNMESAGVATVTASVTTAAVVPVISVGSTIYQSHGMPGQA
IAHAHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHIPRPAVFPVAGAAYPQGMHPAFIGAQ
YPFSVATGPQPPMAATAVTFPGVPVPSMTQIAVHPYHAETGLPLGTTVAVGSVHTGPTIQ
AIQGTALTSLSSQPGSLVSTPFPIEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAH
NDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRL
NPAHIHAHLRTPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPV
GMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaggatggggagaggttctccttcgaagactcggac
cggttcgaggaggactccctgtgctccttcatctccgaggccgagagcctctgtcagaac
tggaggggctggaggaagcagtctgccggacccaactcccccactgtcaagatcaaagac
ggtcaggtgattcctctggtggagttgtcagccaagcaggtggcgttccacatcccgttt
gaggtggtggagaaagtttacccccccgtcccggaacagctgcagctccgcatcgcctac
tggagcttccccgagaatgaggaggacatcaggttatattcctgcctggctaatgggagt
ccggatgaattccaacgtggagagcagctctacaggatccgggccgtcaaagaccctctg
cagatcggtttccatctgagcgccacagtggtgaccagccagtccggccagtccaaaggc
gcttacaacgtggcggtcatgttcgatcgctgccgcatcacctcctgcagctgcacctgt
ggcgccggggccaagtggtgcgcccacgtggtggctctctgcctcttcaggatccacaat
gcatcagcagtgtgtctcagggctccggtctctgagtctttgtccaggctgcagagggac
cagctccagaagtttgcccagtacctcatcagtgagctgcctcagcagatcctccccacg
gctcagcgcctgctggatgagctgctgtcctctcagtccaccgccatcaacaccgtgtgt
ggggctccagacccaaccgcaggcccttcagcatccgaccagagcacctggtatttggac
gagtcgaccctcagcgacaacataaaaaagactctgcacaagttctgtgggccgtcacct
gtcgtcttcagtgatgtaaactccatgtacttgtcgtcgacggagcctccggcggccgcc
gagtgggcgtgtctgctgcggcctctgaggggccgagagccagagggcatttggaacctt
ctgtccatcgtcagggagatgttcaagagacgagacagcaacgccgccccgctgcttgag
attctcactgagcagtgtctcacctatgagcagatcatcagctggtggtacagcgtgcgg
acctcggcgtcccacagcagcgccagcggccacaccggacgcagcaacggccagtcggag
gtggcggctcacgcctgtgccagcatgtgtgacgagatggtggtgctgtggaggctggcg
gtgctggaccccaccatgagcccctgcaggcgcctggaactagcaggccagctgaagcag
tggcatttgaaagttatagagatcgtgaagcgggggcaacatcgcaagtccctggacaaa
ctgttccagggcttcaagcccgctgtggagtcgtgctatttcaactgggagggggcctac
ccgctggacggcatcacctactgcagtgccgatcggaagagcgccactttctgctggtcc
agagcagtgcagcaccagagaggcgtcaaagctgctgcagggttgggcggagagccgcca
gaacccgggggagggggcagagccgacggcggagctgggggagattataaagggaggggt
cactcatcccaacaggaggtggcggtgcgtcccaaggagaccgtcctgaccaagaggaaa
ggcctgtcggtgagcggagggggagggatgctggtgcgcctgggagggggggtctccctg
tctctggaggacggaggagggaagtgcgtgtacaaggggccgggctcctcctccggaggg
aagctgaaactgccgccgggaggcgggaagggggcctctgtgggaggtgcgggaggaggt
ggcgggatgggcggggggaagcacgccggcaccaagcggagaaccagcagtgaagacagc
tcgctggagcccgacctggccgagctcagcctggacgacgggtgcagtctggctctgggc
gtcgaggccagcaacacgtttgagttcctccccctgccgccggagatgctgccctccccg
agctcgctgctgcgagactcgcgcaagtatagcaacggcaacagcagcggggggggcaaa
acgtttgaggccaagcgcgtcggccacgcctccgccggcgcccccgccgtggagcccgct
ccgccgcacaccgtgctggtggtcatggacacgcccagcgcggtggagagggacggggcg
ctggtggccgcgccggtcaacagcaaagacgaagacgtagactctgctggcagtaaccag
ccgtccgcctccacctccgcggtgagatcggccgccacgccaccgtctgccaagctgcaa
cgggcccgccgggaggcggcgccggccggagcagcatcagctgcagcagccgccgccgcc
gcacgtgggccggccaatcagggagcagaggcagcgggaggagaggcggtgggggaggac
gactatcaagcgtactacctgagtgccgcctcggaggagggagcggacagacagctggct
gacaaccaccaggaggaggagccggacatcttcgcagggatgaagccgttggagcaggag
ggccgcatggaggtgctgtttgcgtgtgccgaggccctccacgctcatggctacagtaat
gaggcgtgccggctggccgtggagctggccagagacctgctagccaatcctccagacctc
aaggtggaacagccacagactaagggtaagaagagcaaggtgtccaccagccgtcagacg
caggtggccaccaacacgctgtccaaggctgccttcctcctcactgtcctcagtgagcgg
ctggagctccacaacctggccttcagcaccggcatgttctccctggagctccagagacca
ccggcgtccaccaaagctctggaggtgaagctggcctaccaggagtccgaggtggtgtct
ctgttgaagaagatcccgctgggcctggtggagatgacggccatccgagagcgcggcgag
cagctccgagacggaaacttctgtgactacagacctgtgctgccgctcatgttggccagc
ttcatctttgatgttctgtgcaccccagtttgtgcagttgtgtccccaacgggttcccgt
ccaccgagccgcaaccgtaacaacgagatgcccggcgacgaggagctgggcttcgaggcc
gcggtcgccgctctcggtatgaagaccacagtgagcgaggcggagcatcctctgctgtgt
gaaggaactaggcgggtgaaaggggacctggcgctggctctgatgatcacctataaggac
gaccacagcaagctgaagaagatactggataagttgttggacagggagagtcagacccac
aagccccagactctgagctccttctactccagcaagccggcagccggcagccagcgcagc
ccctccaaacacgctgccgccggtcacagcagcgcgagcgccggcgtctccagacacgcg
ccgccgtcttcatccgcagcgacggcctcttctgcctccgccgcggcgccggtcagtgac
gcgtcgaccagccaggcccatctcaacgcagcgcagaacaacagcacagcgggggagagc
gctgctgagaccagggagcgagcagcagaggggcctcctccatcaggggagcagcagaat
gaagcggccccctttaaggaggccacagtgcccagtcggctggcattgggggcccgctgc
ggctacaatcagcgctgctggggctctccggtccgccagaagaagaaacacaccggcatg
gcgagcatcgacagcagcgctccggagaccacctcggacagctcgcccactctcagccgc
cggccgctccgggccggctgggcggccacgtcctgggggcggggccaggacagtgacagc
atcagcagctcctcgtctgactcgcttggctcctcgtcgtccagcggctcgcgccgggca
gggggcggggccagggccaagagcaccgacaccagcaggtacaaagggcggcgtccagag
tgccatgccccccacgtgcccaaccagccgtcggaggcagcagcccatttttactttgag
ctggccaagacggtgctgatcaaagccggggggaactcctccacgtccattttcactcag
ccctcggccagcgggggccaccagggaccccacagaaacctgcacctgtgtgcctttgag
attggcctgtacgcgcttggcctccacaactttgtctcgcccaactggctgtccaggacc
tactcctcccatgtgtcctggatcactggccaggccatggagatcggcagcgccgccctc
aacattttggtggagtgttgggacggtcacctcacccctccagaggtggcgtccctggcc
gaccgagcatcgcgggccagagaccccaacatggtccgggcggcggcggagctggccctg
agctgcctgcctcacgctcacgcgctcaaccccaacgagatccagagagcgctggtgcag
tgcaaagagcaggacaacatgatgctggagaaggcctgcatggcagtggaggaagccgcc
aaggggggaggtgtgtaccccgaggttctgttcgaggtagctcaccagtggtactggctg
tacgagcagtcagtgggcgggggctcaggcccgcagcgcgagacctccgggcgctgcggg
gccaacggcggctcggggaggaggcccctggagaccagctgcgtggtcctggacgccggc
ggcaacatggagtcggcgggggtggcgacggtcacggcctcggtcaccacggcggccgtc
gtgcccgtcatctccgtgggctccaccatctaccagtcccacggcatgccgggccaggcc
atagcccatgcccacagccagggcctccacccctacaccaccatccaggcccatctcccc
accgtgtgcaccccccagtacctgggacaccctctgcagcacattccccgacccgccgtc
ttccccgtggctggtgctgcatacccacagggaatgcacccggccttcatcggggcgcag
tacccgttctcagtggccactggcccgcagcctccgatggcagccacggctgtgaccttc
cccggtgtccccgtaccgtccatgactcagatcgccgtccacccgtaccacgccgagacg
ggcctgcccctcggcaccaccgtagcagtaggcagcgtccacacgggccccacaatccag
gccatccaggggacggccctgacctccctctcctcccagcccggctcattggtcagcact
cctttcccaatagaggacgagcagcacagccagccaatcagccagcagggcctgcactac
ctgcattctgcctacagagttggcatgctggcattggagatgctcggcaggagggcccac
aacgaccacccgaacaacttctccaggagcccgccttacaccgaggacgtcaaatggctg
ctgggactggctgcgaggctcggagtcaactacgtgtaccagttctgtgttggagcagca
aaaggtgtcctgagtccgttcgtcctacaggagatcatcatggaggctcttcagaggctc
aaccccgcccacatccacgcccacctccgaacgcccgctttccaccagctggtccagcgc
tgccaacaggcctacatgcagtacatccaccaccggctcatccacctgacgccggctgac
tacgacgactttgtgaacatcatccgcagcgctcgcggcgctttctgcctgacgcccgtg
ggcatgatgcagtttaacgacgtgctgcagaacctgaagagaggcaagcagaccaaggag
ctgtggcagcgcatctccctggagatggcgaccttctccccctga
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