Gasterosteus aculeatus (three-spined stickleback): 120820860
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Entry
120820860 CDS
T07457
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120820860 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120820860 (herc4)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120820860 (herc4)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
HECT type E3
120820860 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
120820860
NCBI-ProteinID:
XP_040034960
LinkDB
All DBs
Position
VI:complement(2971765..2982332)
Genome browser
AA seq
1044 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCEFFHGKQVCDLGCGHRHTAYLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIIVAVSCGESHTLALNDKGQVFSWGLGSDGQLGLQN
FEECVRVPRNIKSLSDVQIAQVACGYYHSHALSRGGQVFSWGHNRYGQLGLGMNGQSIST
PQMIQSLQGIPFARISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDCNDRFFPSLLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIA
CGRQHTLAFTPSGAKMDSFGLAGNGQLGTRSTCNRKSPALVKGPWMASKDADSEPCCYVK
RIYAGGDQSFAHYCTNNKLQNMDDTMMQDPHRKICTLNEDIIDKWCNYSPGRLPIEISNE
IDLVFSSASCLNGSFLSTSHPDHYSTSSKCSGVDVNTARILLHKVIQQHHHEIAQQIAAS
LEKNLIPKLSNSPPDIEALRLYLTLPECPLFKDRNNYVTIAIPFAKSLLSLKEAPLKVLG
NWWSTFEPPAFQRLVELYKEVVVYLLQMHKMGIPSVEQRIFTCFLDTSLKLLEILQTVSE
RAGHIIQYDKFYIHELDELIDIRNDYVTWIQRQMYPLGHDGVVTLCRYPFVFDAQAKTTL
LQTDAVIQMQMAVDQAQMQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSKNVD
YKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFEDID
LFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLDYTE
DDLEETFCLNFTITEENYGATEVLELVRNGEDISVNKSNRQDFVAAYVDYVFNTSVASLF
ECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTEYKGEYWKDHPTIRLFW
EVFHSLPLEKKKQFLLFLTGSDRIPILGMKNLKLVIQPTSGGEHYLPVAHTCFNLLDLPK
YKSLETLCEKLLQAIDHNQGFNLA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaatgcctcctatggacagctaggcttggggggaatcgatgaagag
attgttgttgagccacgaaaatgtgaattctttcacgggaagcaagtgtgcgatttgggg
tgcggccacaggcacacagcctacctgctggaggacgggacagtgtacacctgtggatgc
aatgacctaggacagctgggacacgagaagtcccgcaagaaaccagagcaggtcgtggct
ctggatgcacagatcattgtggcagtgtcatgtggagagtcccacacactggccctgaat
gacaaagggcaggtgttctcgtggggcctgggctcagatggccagttgggactacagaac
tttgaagaatgtgtgcgtgtgccgaggaatatcaagagtttgtcagatgtacaaattgct
caggtagcttgtggctattatcactcacatgcactttcaagaggtggccaagtcttctcc
tggggccacaaccgatatggacaactcgggctaggaatgaacggacagagtatttccacc
ccccaaatgatccagtctctgcagggcattccctttgctcggatatcagcaggtggcgct
cacagctttgctctcactctctcgggggcggtgttcggctgggggcgcaacaagtttggt
cagctgggtctcaatgactgcaatgatcgtttttttccatccctgctgaagtcccttaga
tcccagagagtgatttacatctcctgtggagaagatcacacagcagcacttaccaaggaa
ggaggtgtgttcacatttggtgctggaggatacggacaacttggacacaactctacaaac
catgaaatcaacccgaggaaagtgtttgagctcatgggaaatgtggtcacgcagattgca
tgtggaaggcagcacacgctggctttcacaccctccggtgcaaagatggactcgtttggg
ctagccggtaacgggcagcttggcactcgctccacttgcaacagaaagagtccggccctc
gtcaaaggcccctggatggcttccaaggatgcagactctgagccgtgctgttatgtcaag
aggatttatgctggaggagaccagagctttgctcattactgcacaaacaataaactgcag
aacatggatgacacgatgatgcaagatccccacaggaagatttgcactttgaatgaggat
attatagacaagtggtgtaactactcaccagggagactcccaatagaaatctccaatgag
attgaccttgtgttctcctcggcgagctgcctcaacggatcttttctgtccacgagtcac
ccagatcactacagtaccagcagtaagtgttcaggcgtggatgtaaacacggctcgcatc
ctgttgcacaaagtcatccaacagcatcaccacgagatcgctcagcagattgctgccagt
ctggaaaagaaccttattcccaaactaagcaactctcctccagacattgaagccctgcga
ctctacctcacacttccagaatgccctctcttcaaggaccggaataattacgtgaccatc
gctattccgtttgccaagtccctcctcagtctgaaggaggctccattgaaagtgctcggg
aactggtggtctacatttgagccccccgccttccagcgtctggtcgagttgtacaaggag
gtggtggtgtatctgcttcagatgcacaagatgggcattccttcagttgagcagaggatt
ttcacctgcttcctggacacgtccctcaaactcctggagatcctgcaaacagtgagtgag
agagcaggacacatcattcagtacgataaattctacatccacgagttggatgagctgatc
gacatcaggaatgactacgtcacatggattcagaggcagatgtacccgttgggtcatgat
ggtgtggtgactttgtgcaggtatccctttgtgttcgatgcccaagcaaagacaacactg
cttcagactgatgccgtcatacagatgcagatggcagtggaccaggcacaaatgcaaaac
tttagttccatgttcctgccagcggttgaatctgtcaacccgtgcctcatactcatcgtt
cggagagaaaatattgttggagacaccatggaagtcctcaggaagtcaaagaacgttgac
tacaagaaaccactcaaggtgatctttgtgggagaagaggcagtcgatgcaggaggcgtg
agaaaagagttcttcctcctgatcatgaaagagctgctggatcccaaatatgggatgttc
cgttactacgaggagtccaggctcatctggttttcaaacaagacctttgaggacattgac
ttgttcaacctcattggggtcatctgtggcctggccatttacaatctgacaatagtggaa
ctcaacttcccagtggccctttacaagaagctcctgaagaggaagccgacactagatgac
ctgaaagagctaatgccagatgtgggaaggagtctgcagcagttactggactacacagaa
gatgacctcgaggagaccttctgcttgaacttcacaatcacagaggagaactacggcgcc
acagaggtcctggaactagtgcggaatggcgaagacatctctgtcaataaatcaaaccgg
caggattttgtcgccgcatacgtagactatgttttcaacacatcagtggcctcgctcttt
gagtgcttctacgcaggcttccacaaggtgtgcggaggaaaagttctcgagctgttccag
ccaaatgaactgcaagccatggtcattggcaacaccaactatgactggacagagctcgaa
aagagtactgaatacaaaggggagtactggaaggaccatcccaccatcaggctcttctgg
gaggtgttccacagtcttcccttagagaagaaaaagcaatttctattgttcctcacagga
agtgaccggatacccattttgggaatgaaaaacctgaagctagtgatccagcccaccagt
ggaggggagcattacttacctgtggcccacacctgctttaacctgctggacctacccaag
tacaagagtctggaaaccctctgtgagaagcttctacaggctatagatcacaatcaaggc
tttaatctggcctga
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