Gasterosteus aculeatus (three-spined stickleback): 120821486
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Entry
120821486 CDS
T07457
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120821486 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120821486 (pcf11)
03019 Messenger RNA biogenesis [BR:
gat03019
]
120821486 (pcf11)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120821486 (pcf11)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120821486 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
SHOCT
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
120821486
NCBI-ProteinID:
XP_040035982
LinkDB
All DBs
Position
7:complement(30552151..30563047)
Genome browser
AA seq
1507 aa
AA seq
DB search
MDCLPINGHGIDRETVGLPGSKMADTAAREDACREYQSSLEDLTFNSKPHINMLTILAEE
NLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEK
VDESTRKSLFKLRSTWEDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLK
QPDESPSQPAAANTTPPTPPVAPPPQPVPVAAATAGQSSLTQEQLIRQQLLAKQKQLLEL
QQKKIELELEQTKAQLAGGFVVPTSTHPSTPVLKAGGPAGPVVRPWIPPPTQAEAKLPTR
DPRLNRIAFPTPSQPKEQHAGKKEGLAATASPAATPEKSARPDKVKTPRKEAPEEKKSKS
PSPMARALQTKNKMEAEIQKSADGTKKDPRLKKRPQDTSGEAMDEELKEKKRCPDKKERE
EAPRGLDPQRASKGKLANGSAEKPEFKAGGNARTHARKRSPNATSPKRKERRSPKWGGSS
SPSHKPGKPRRVGPDHGKPSRGDRPPPKKNQSEGRRSKRPAEDRHSESRDSHSPRSHEGG
GKEAKEAPHRWRSGWEENKHPKLLEESHVKPGPQRHKPYGTPTRPAAPRTPKHRLSVDAN
LQIPEVLNSASKKDLLRRASKRLESGEISQEDFLNMAHQIKHFFQYQEEKQQRSDSWDDD
LPPPSKLQLLSSPPLAQTPRPPRDDMDAAELSYYEHKSKLRKTQVAHRAAGEEWEGEESP
EEGEEAGKSTGHPKYSRTQRDRQGERRSKEHDEPRLIEEYNHGKEFPTLKSLPGLRFRRR
ADPREASEREWNSPLTERPRFDEREEQKSGYDAPRGYGLPADSRLPDPRRPDGAPPSAVV
HRSCPSPVGPEAAPRFERERLSPLHQKDPAETSPIPRFESPNSEHSDDGPLNLDIPPPKS
ILKGPARICPLASVSPGHTPPQDGGHRYNGPGHMGPARPHLPGWYEGPGHYDDSARFEGP
HHPGPGRFDSGGPHHNMPHMSHSVGRFDCVPHPQGPGGFDSSIGHQPPMRFEGAGPGPGH
FEGPMQRFDSPRCFDNMAPGSGPMSFQQQRPMRFESPVQPGPRFDVPHQGGPPLYECSPG
QQNPLRFGLQPSMRPMAPPIYDGSIAPQQNFNMNPQRFPEPMNPQFPAGPMAFPAQNLQA
AGNFNMQQAPPFSQSGPAPFYNPATSALGMQRPANMLGNHNKTFLPQNPFPLGQKIQYLI
PPENHFGQVDVNDLLTKLISNGIIKPSQPDATPTPAEPTSIAPLAPPTVEEEEEEVEEAD
DDDIPDLTSFTVDDMKHRLESVVTKLYSGNQCCLCSMRFTAAQTDLYADHLDWHFRQNHA
GKVAGKKITHRRWYYGLRDWVEFEEIADLEERAKSHFFEKENEEEVQKSQAAAKEKEFMS
VKATKDQVGELCEICQEPFETYWVEEEEDWFLKDAIRDDDKNFHPACFEDYKNTSSYVDV
SPSPSKLLADHPLSAFIKTEGGGERASCAITANPASSLKQEVESEVSGPPEVKQEEVLTD
GCYQNKA
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgccaatcaatggtcacggtatcgatagagaaactgtaggtctacccggg
tcgaagatggcggacaccgcggcgagagaagacgcgtgccgggagtatcagtcctcgctg
gaggacctgacgttcaacagcaagcctcacatcaacatgctgaccatcctggcggaggaa
aacctcaacttcgccaaggatatcgtcgctattattgaagcgcaaataagcaaggcccca
tctgccgagaagctcccggttttgtacttagtggattccatagtgaagaatgttggcgga
gagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaag
gtggatgagagcaccaggaagagtctgttcaagctgcgctccacctgggaggacgtgttc
cccctgaagaagctttacgcgctggacgtgcgggtcaactcggtggacccggcgtggccc
atcaagccgctgccgcccacagtcaacgccagcatccacgtcaaccccaagttcctaaag
cagcccgatgagtctccctctcagccggctgccgctaacacaacgccaccaactccgccc
gtggctccgcctcctcagccggtccctgtcgccgctgccactgccggccaatccagcctg
acccaggagcagctgatcagacagcagctgctggccaagcagaagcagcttctggagctc
cagcagaagaagattgagctggaactggagcagaccaaggcccagctggccggtggcttc
gtggtcccgacatccactcacccttccaccccggtgctgaaggccggtgggccagctggt
cctgtggtccgtccatggattcctcctccgactcaagcagaggccaaactgcccaccaga
gacccccggctgaaccgcatcgccttccctactccctcccagcccaaagaacagcatgct
gggaagaaagaaggactcgcagcgaccgcaagtccagcagcaacgccagagaaatctgcc
cggccagacaaagtgaaaaccccgaggaaagaggcgccggaggagaagaagtccaagtcc
ccgtctccgatggccagagccctccagactaaaaacaagatggaggctgagatccagaag
tcagcagacggcaccaagaaggatccccggctgaagaaacgtccacaggacacgagcggc
gaggccatggacgaggagctgaaggagaagaagagatgccctgacaagaaggagcgagag
gaggcgcctcggggcctcgacccccagagagccagcaaggggaagctggccaacggctct
gctgagaagcccgagttcaaggccgggggcaatgcccgcacgcacgccaggaagcgctcg
cccaacgccacctcccccaagaggaaggagcggcgctcgcccaagtgggggggctcctcg
tcaccgtcccacaaacctggtaagccccgccgggtcggaccggaccacggcaagcccagt
cggggggaccggcccccgcccaaaaagaaccagtcggagggccgcaggtccaagaggcca
gcggaggaccgccactccgagtccagagactcccactcccccaggagccacgagggagga
ggcaaggaggccaaggaggctcctcaccgctggaggagcggctgggaggagaacaaacat
cccaagctgttggaggagtcccacgtgaagccggggcctcagagacacaaaccctatggg
acgccgactcgccctgcggccccccggactcccaagcaccgcctcagcgtggacgccaac
ctgcagatacccgaagtcctcaactctgcctccaagaaggacctgctgagacgggccagc
aagcgcctggagagcggggagatctcccaggaggacttcctgaacatggcccaccagatc
aaacacttcttccagtaccaggaggagaagcagcagcgctccgacagctgggacgacgac
ctccccccccccagcaagctgcagttactgagctcgccgccattggcacagacaccgcgg
cccccccgggacgacatggacgccgccgagctgtcgtattacgagcacaagtccaagctg
aggaagacacaggtcgcccaccgggcggcgggggaggagtgggagggcgaggagagtccc
gaggagggcgaggaggcggggaaaagtaccgggcaccccaaatacagccggacgcaacgg
gaccggcaaggcgagaggcggagcaaagagcacgacgagccgcgcctcatcgaggagtac
aaccacgggaaggagttccccacgctcaagtccctgcctggccttcgcttcaggaggagg
gctgaccccagagaagccagtgaacgggagtggaattcgccgctgacggagcggccgcgc
tttgacgagcgcgaggagcagaagagcggctacgatgcgccgcggggctacggcctcccc
gccgacagcaggctgccagacccccggaggccagatggtgcccccccctcggccgtcgtc
caccggagctgtcccagcccggtcgggcccgaggcggcgcccaggtttgaacgtgagcgc
ctttctccgctgcaccagaaggacccggcggagacgagtccgatcccccgcttcgagagc
cccaacagcgagcactcggacgacggtcccctcaacctggacatcccgccccccaagtcc
atcctgaaggggcctgctcgcatctgcccgctagcctctgtctccccgggtcacacgccg
ccgcaagatggaggacaccggtacaacgggccgggacacatgggacctgccagaccgcac
ctcccaggctggtacgaaggccctgggcattacgacgactcggcccggttcgaggggcct
caccacccggggcccggcagattcgacagtggcggacctcatcacaatatgccccacatg
tctcacagtgtgggccgattcgactgcgtcccccaccctcagggccccggaggatttgac
tcttccattggtcatcaaccccctatgaggttcgagggggcgggtcccggaccgggtcac
tttgagggcccgatgcagcgctttgactcgccgcggtgcttcgataacatggcccccggc
tctggaccaatgagcttccagcagcagcggccgatgcgcttcgagtcccccgttcagccg
ggcccccgtttcgacgtgccgcatcagggcgggcccccgttgtacgagtgttccccgggc
caacagaacccgctgaggtttggcctgcagccttccatgaggccaatggccccgcccatc
tatgacggctccatcgccccccaacagaacttcaatatgaaccctcagcggttcccggag
ccaatgaacccccagttccccgccgggcccatggccttcccagcgcagaacctgcaagca
gccgggaacttcaacatgcagcaggctccgcctttcagccagtcaggccccgcccccttc
tacaacccagccacttccgccctcggcatgcagcggccggccaacatgctggggaaccac
aacaagaccttcctccctcagaacccattccctttgggacagaagattcagtatttgatc
cccccggagaaccactttggccaggtggacgtcaacgaccttctgaccaagctcatctcc
aacgggatcatcaagccgtctcagccagacgccacgccgacgcctgccgaacccacttcc
atagctccactagctccgcccactgtggaggaggaggaagaggaggtagaggaggcggac
gatgacgacatccccgacctgaccagcttcaccgtggacgacatgaagcaccgcttggag
agcgtggtgaccaagctgtactcagggaaccagtgctgcctgtgcagcatgaggttcacc
gcggctcagacagacctgtacgcagaccacctggactggcacttcaggcagaaccacgcg
ggaaaggtggccggcaagaagatcacgcaccgccgctggtactacggcctgcgggactgg
gtggagtttgaggagatcgctgacctggaggagcgcgccaagagtcacttctttgagaag
gagaacgaggaggaggtccagaagagtcaagctgccgccaaggagaaggagttcatgagt
gtgaaggccaccaaggaccaagtaggggagctgtgtgagatctgtcaggagcccttcgag
acgtactgggtggaggaggaggaggactggttcctgaaggacgccatccgggacgatgac
aagaacttccatcccgcctgttttgaagattataaaaatacctcgtcctacgtcgacgtc
tctccgtctcccagcaagctgctggccgaccacccgctgagcgcctttataaagaccgaa
gggggtggggagcgcgcttcctgtgccatcaccgctaaccccgcctcctcgctcaaacag
gaagtggagtctgaggtgagcgggccgcccgaggtgaagcaggaggaggtgctaacggac
ggctgttatcagaacaaagcgtga
DBGET
integrated database retrieval system
