Gasterosteus aculeatus (three-spined stickleback): 120821488
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Entry
120821488 CDS
T07457
Symbol
focad
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120821488 (focad)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120821488 (focad)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
Motif
Other DBs
NCBI-GeneID:
120821488
NCBI-ProteinID:
XP_040035983
UniProt:
G3N772
LinkDB
All DBs
Position
VII:complement(11796865..11833043)
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AA seq
1804 aa
AA seq
DB search
MTDSLKIRFDFHSPVIQAQTVRQLVAAVLKEKETNGRITQSSTQGPALEALWQQCCSDCA
PVRSACCDAVVLLVDQGHADLHYVLNRVLNLLPSSRNAQGLMKNIGRLLQLQADQRERVP
HFSCPYSIRSSPHPFITALENRVDCWPTLLLEIDDLIGQAADRSEPSYITMLAPFLQYLY
CEPQRQPQHALLRHRLLRVLLPAHPGAGSVLQEPTSQVADSLLQCLCQLVPHMQVDSVEA
VLELCGFVDALFQNLVLAPKERWRTERVGLLLHLLCACRRCLELNGDCRPLLNVLQRLLP
ASHQELPLDELLMGVAMLLLEVPAAQQTSLLSLALSLVPEQAEPSPWSSPVLVLPVLQLL
SCSDLTEPLADRRTHSLNKDLAHRLLRRISRPAGKPGQSGPPLALPLTPWYSELSVALSM
LRSVVDHPAAAAEWLLSVCSALSSSHSRLGTLALIVTHLIIVGGEDVCQLALKAGQAVAA
ADPCQVPSLIPVLLFKLGKEKNPVLAHAVLNCLPNLGTHKFCVPMVLQTLHMLASTTKLR
AVAMRLMTALWKKQDRVYPELQRLLGQQDSRVVVGRDSQWEQILARAACVRDICRERPYQ
HGSDMLAVITLTLNQCTKPDMATPAALALQGLQELCRAEVVDIVSTWRSLGPELSCDSRP
QMVKAIAELLALVPQLPVKSDEYKKVKEEVVSFLWNYAVSMDPEVASCGYRALADFPEVV
HTIHLLPDAARPAAKVPENEEDETVTEEENEEKDLSIPGSSYVKLMALTPVSVLPAFELF
LTSLVKQEMGQMPRGVYFSALRGGNLRSDQGKTMAGIPSFMLKTYEKNKQPGLKPGLAAG
LLLCYDLPVQTDREGRRIDRFLVSRSRSYQQSLATLIHEVNIQPSEWHRALLLPQAWRGF
MSRAFHAVLQGRRAELEMLQKRSEEEPQELQYKQHCAWLWARDQLADVIKAATKDSPVVQ
GNSILAVSGLAAVLAKYESNLPADGDGSLGAGPEFVPSASWLAIVVNTMLSISSSSYKAK
GQVFPWFLHRSYSGENTASAIARSCASLALSLLVPVLVVWQRDGLGQVLSALQAGLPGSP
TADDSQAVQFHSGLALGMVLASVQHQRLSDVPLHKDTDLLLSSLDALECCSFNTNLEYNT
GCVLGLGLVLAALCSSGHTDQHVHITLTLDKLLSNLQDSSGQGRMQQEVLAYSVACIGVS
AFNGGLIDADKAEEVMNTLRALTEESQQTPGFSLALGLVVHGLSMSGHGKAEDIHHRLLA
AWIKILLAEGCPTMQRLAAANGLVALVGSESSLIQQTSELELSSQKRSRLNEVIRAITQI
ITSSGAIGLQSNSACLVGHLHLAHVSTSHSHTAVPQDFSYLPEKSLIRSIVDFISEAGKK
GPEFAHPALVKSVLTPLASVGASFQYPPVNWSAVLSPLMRLSFGEDVQHQCVRLAACQVQ
SSQSASLFLGPWLSPPLVHSLSYQTRALLFESVGLWMKHVSEDKLQVHLESLGLQQFQED
LRPQRLALCRSLLQGLAVAMALQSPPNNCWTILCSTTEKIFTLLPNNIQDNEVDLYVGIS
KCLSEMSDAEIERVTRVQETQMEKTCFVLAYLTSQGRVPLLGLNDVIAGVLRGWPSRRVG
WLLLQTFYQCRLATSPNTGVSKRMDWLLELMGHIRNVAYGATSVTIGDTKLATDFLFQVF
AAAVVSWGDHSMPLLFGIRAQWFPWQSDSKPQTVRHGLYGEESLTERALPQCLLGMSCSL
ALLLAKEPWSSQTHKFIEWLFTIIEGPDQTLSATTVSTAGAALLALKSSAEFKKKAVWTR
AYGW
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgacggacagtctgaagatacgatttgactttcacagccccgtcatacaagctcagacg
gtgagacagcttgttgctgctgtgctgaaggagaaagaaaccaatgggcgaatcacacag
tcctccacccagggcccggcgctggaggccctgtggcagcagtgctgcagtgactgcgct
ccggtgcgctctgcctgctgcgatgccgtggtgctgctggtggatcaaggccacgccgac
ctacactacgttctcaacagagtcctcaacctgctgccctcctccagaaatgcccagggg
ctgatgaagaatattggacggctgctccagttgcaggccgaccagagagaaagagtccca
cacttcagctgtccttactccatcaggagcagccctcacccgttcatcactgcgctggag
aaccgcgtggactgctggcccactttgcttctggagattgatgacttaattggccaggct
gctgacagaagtgaaccctcctacatcaccatgctggcccccttcctgcaatacctgtac
tgtgagcctcagaggcagccccagcacgccctcctgcggcacagactcctcagggtgctc
ctgcctgcacacccaggggctggatccgtcctccaggaacccacctcccaagtggcagac
agcctacttcagtgcctctgtcagctggtgccacacatgcaggtggacagcgtggaggcg
gtgctggagctgtgtggattcgtagacgccctgtttcagaacctcgtcctggccccgaag
gaacgctggaggacggagagagtcggcctgcttctccacctgctgtgtgcctgccggcgc
tgcctggagttaaacggagactgccgccctctgctcaacgtgctgcaacggctgctgccc
gccagtcaccaggagctgccgttggatgagctgttgatgggcgtggctatgctgctctta
gaggtccctgcagctcagcagaccagcctgctcagtctggctctgagtttagttcctgag
caggctgagccgtcgccctggtccagtccagtcctggttcttcctgtgctccagctcctg
tcctgctcggacctcaccgagccgctggctgaccggcggacacacagcctcaacaaggac
ctggcccacaggcttctgcgccgcatcagcagaccggcggggaaacctggtcagtctggt
cccccattggctcttcctctcactccgtggtacagcgagctcagtgtggcactgtccatg
ctgcgtagcgtggtagaccatccggcggcagcagctgagtggctgctgtccgtctgctct
gccctgtcgtccagccacagccggctcggcaccctggccctcatcgtgacccacctcatc
atcgtgggtggggaagacgtgtgccagctggctctcaaagcaggccaggccgtcgctgca
gccgacccctgccaggttccctcccttattcctgttctgttgttcaaacttgggaaggag
aagaatccggtcctggctcacgctgtgctgaactgcctgccaaacctcgggactcacaag
ttctgtgtccccatggtgctgcagactctccacatgctggccagcaccactaagctcaga
gcggtggcaatgcgcctcatgaccgctctttggaagaaacaggatcgagtctacccggag
ttgcagcgtctgctgggccagcaggacagcagggtggtggtggggagggactcccagtgg
gagcagatcctggccagagccgcctgcgtcagagacatctgcagagagaggccttaccaa
catggaagtgacatgttggctgtcatcacacttactctgaaccagtgcaccaaaccagac
atggccacccctgctgctctcgccctgcaaggactacaggagctgtgccgggcagaggtt
gtggacattgtctcgacatggaggagtctgggacccgagctgagctgtgactcgcgtccc
cagatggtcaaagccattgcagaacttctggctctggttccccagctccctgtcaagtcg
gatgaatacaagaaagtgaaggaggaggtggtcagctttctctggaattatgctgtgagc
atggatccagaggtggccagctgtggctacagggctttagcagattttcctgaagtggtc
cacacaatacatcttcttcctgatgcagccagaccagctgcaaaggtccctgaaaatgag
gaggatgaaaccgtgacggaggaagagaacgaagagaaggatctctccatcccaggttca
tcttatgtgaagctgatggctctcacccctgtgtctgttctaccagccttcgagctcttt
ctgacctcactggtgaagcaggagatgggccagatgccccggggggtgtacttctccgcc
ctgaggggggggaacctgcgttctgaccagggaaaaaccatggccgggatcccttcattc
atgttgaaaacctatgagaagaacaagcagcctgggctgaagcctggactggcagctggc
ctgctgctctgttacgacctgcctgtgcagacggaccgtgaaggcagacggatcgaccgt
tttctcgtcagccgcagccgcagctaccagcagtccttggcaactcttattcacgaagtg
aacatccagccatccgagtggcatcgtgctctcctcctccctcaggcctggagaggtttc
atgagccgagctttccacgctgtcctacagggtcgacgtgctgaattagagatgctgcag
aaacgaagtgaagaggagccccaggagctccaatacaaacagcactgtgcctggctgtgg
gccagagatcagctggccgacgtgatcaaagctgctacaaaggacagtcctgtagttcag
gggaactccatcctggctgtgagcggcctggctgctgttctggctaaatatgagagcaac
ctgcctgctgatggagacggcagcctcggggctggaccagagtttgtcccctcagccagc
tggttggctattgttgtcaacaccatgctcagcatcagcagcagcagctacaaagccaaa
ggacaagtcttcccatggttcctacatcggtcctactctggtgagaacacagcgagtgct
atcgctcgctcctgtgccagtctggcgttgtctctgctggtcccggtgctggtggtgtgg
cagagggacggtctgggacaggtcctgtcagcgctgcaggccggcctgccaggctccccc
accgccgacgactcccaggctgtccagttccactccggcctggcactcggcatggtgctt
gccagtgtgcaacaccaacgcctcagtgatgtccctcttcacaaggacactgatctcctc
ctcagctctctggatgctctggaatgttgctcgttcaacaccaacctggaatacaatact
ggctgtgttttaggtctgggtctggttctcgcagctctctgcagcagtggacatacggac
caacatgtccacatcaccctgacactggacaaactactgtccaacctgcaggacagcagt
gggcagggacgcatgcagcaggaggttttggcgtactctgttgcctgtataggcgtctcg
gcctttaatggaggacttattgatgctgacaaggctgaggaggtcatgaacactctgcgc
gccctgactgaggagagccagcagaccccaggcttctccctggctctggggctggtggtc
cacggcctgtcgatgtcaggccatggtaaagcagaggacatccatcatcgtctgctggca
gcttggatcaagatcttattggccgagggttgtcctactatgcagcgcctggccgccgca
aatggcctggtggctttagtcggatctgagagttctctcatccagcaaacaagtgagctg
gagctttcctcccagaaacggagcaggctgaatgaggttattcgagccatcacacagatc
ataacatcctcaggagccattggtttgcagtccaacagtgcttgtttggttggtcatttg
catttggcccatgtatccaccagtcacagtcatacagcagtccctcaggatttcagttac
ctcccagagaaaagcctcatccgatccatcgttgacttcatctcagaggcagggaaaaaa
ggtccagagtttgctcatccagctctggttaaatcggttctgaccccactggcatcggtt
ggagccagcttccagtacccccccgtcaactggagtgctgtcttatctcctctgatgagg
ctcagcttcggagaggatgttcagcatcagtgtgtgcggctggcagcgtgccaggttcag
tcctctcagagtgcctctctctttctgggcccctggctgtccccgccccttgtgcacagt
ctcagctaccagactcgggctttgctgtttgagagtgttggcttgtggatgaagcatgtt
tctgaagataagctccaggtccacttggagagtctgggtctgcagcagttccaggaggat
ctccgaccccagcgactggccctgtgccgttccctgctgcagggcctcgccgtggccatg
gctctccaaagcccccccaataactgctggaccatcctctgctccaccactgagaagatc
ttcaccctgctgcccaacaacatccaggataatgaagtggatttgtacgtgggaatcagc
aaatgtttgtctgagatgtctgatgcagagattgaaagagtcacacgggtccaggagact
cagatggagaagacctgcttcgtcctcgcttacttgacctcccagggccgagtgcccctc
ctggggctcaatgacgtcattgccggtgtgcttcgtggttggccaagccgcagagttggc
tggctcctcctgcagactttttaccagtgtcgcctggccaccagccccaatactggtgtt
tcaaaaagaatggattggctgctggagctgatgggacacatccgaaatgttgcctacggt
gcaacatccgtcacaattggagacaccaaactggccacagacttcctgttccaggtcttt
gctgctgccgtagtttcctggggtgaccactccatgcccctcctgttcggcatcagggcc
cagtggttcccatggcaatccgactcaaagccccaaactgtgcgacatggtctgtacggt
gaggagtcgctcacggagcgcgccctgccacagtgcctgctgggtatgtcctgcagcctg
gctctactcctggccaaagagccttggagcagccagacgcacaagttcatagagtggctt
ttcaccatcatagaaggtcctgatcagactctgtcagccacaactgtcagcacagccgga
gctgcccttttggccctgaagtcatccgctgagttcaagaagaaagctgtatggaccaga
gcatacgggtggtag
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