Gasterosteus aculeatus (three-spined stickleback): 120821915
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Entry
120821915 CDS
T07457
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04136
Autophagy - other
gat04140
Autophagy - animal
gat04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120821915 (atg16l1)
04136 Autophagy - other
120821915 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120821915 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120821915 (atg16l1)
03029 Mitochondrial biogenesis [BR:
gat03029
]
120821915 (atg16l1)
Membrane trafficking [BR:
gat04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120821915 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
120821915 (atg16l1)
Mitochondrial biogenesis [BR:
gat03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120821915 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_NOL10_N
Tricorn_2nd
eIF2A
CFAP251_N
WD40_RFWD3
Beta-prop_ACSF4
PUMA_CC
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
DUF7310
ADIP
NET2A
AP5B1_middle
Uso1_p115_C
CNN1_N
TolA_bind_tri
CLIP1
FKBP15
Rod_CreS
CCDC186_middle
FPP
Motif
Other DBs
NCBI-GeneID:
120821915
NCBI-ProteinID:
XP_040036970
UniProt:
G3N934
LinkDB
All DBs
Position
1:656609..668188
Genome browser
AA seq
619 aa
AA seq
DB search
MAERRAECWKRHILDQLKARDRVQRQSFEEIVLQYNRLLEKSDLQTVLSERYQPDKYDIQ
RGHDSSLGTDPSRGEVLQQEMSQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKEI
QSNEAKMSEYQQQVSSLEGDCRELRGYLQDLERANQTLKDEYDALQITFSALEEKLRKTS
EDNQELVSRWMAEKAQEANKLNAENEKDNRRRQAKLQKELADAAKEPLPIEQDDDIEVLS
EDGGKGGGETSPKRPLSRTPSKKSSQPPPAGLLDSISNIFGESECVKPGLAPPLSRRRPA
NSFSSSPENTDAPSGVCAEVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRVKL
WEVAAGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHS
GKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFD
KKVRFWDIRAESIVQELELFGRVTSLDLNHDRTELLTCSRDDLVKIIDLRTNAVRQTLSA
QGFKCGADWTRVTFSPDGSYVAGGSADGALYIWNVLTGKVDRTLDRNHNSAINSVSWSPS
GAFVASVEKGSKAILWSDM
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcgtgctgagtgttggaagagacacatcttagatcagctgaaggccaga
gacagagttcagaggcagagctttgaggagattgtcctccagtataaccgtctgctggag
aagtctgacctgcagacggttttatcagaaagataccaaccggacaaatacgacatccag
agagggcatgactctagcttggggacagaccctagccgtggtgaggtcctgcagcaggag
atgtctcagatgagaatcaaacaccaggaggagctgacggagctgcacaagaaacgagga
gagctggctcagaatgtgatcgaattgaacaatcagattcagcagaaagacaaagagatc
cagagcaacgaggccaagatgtctgagtaccagcagcaagttagcagcctggagggggac
tgtcgggagctgaggggctaccttcaggacctggagcgggccaaccagactctgaaagac
gagtacgacgctctgcagatcaccttctctgctctggaggagaagctgaggaagaccagc
gaagacaaccaggagctggtgtcccgctggatggctgagaaggctcaggaggctaacaag
ctgaacgcagagaacgagaaggacaacaggcgcagacaagctaaactgcagaaggaactg
gccgacgcagcaaaggagccacttcccatcgagcaggacgacgacatagaggttctgtca
gaggacggcgggaaggggggaggagagacgtctcccaagagacccctcagcaggactcca
agtaagaagagttcccagcctcctcctgctggtctgctggactccatctccaacatcttt
ggcgagtctgagtgtgtcaagcctggactcgcccccccactctccaggcgtcgacctgct
aactccttcagctcctcgcctgagaacactgacgccccctctggagtgtgtgctgaggtc
cgagtcccttcaaccgctctccacgtgttcgaggcacatgacggcgaggtcaacgcagtg
aggttcagccccggatctcgtctcctagcaacaggagggatggaccgcagggtgaagctg
tgggaagtcgctgcaggtcgctgtgagcctaaaggcgctctgaccggcagcaacgctgga
atcaccagcatcgagtttgacagcgctggctcctatctgctggcggcctccaatgacttt
gcgagtcggatctggaccgtagacgactacagactccgacacaccttgacgggccacagt
gggaaggtgctggcagctcgcttcctattggacaacgctcgcatcgtctctgggagctac
gaccgcacgctgaagctctgggacctccgcagcaaagtctgtatgaagacggtgtttgct
ggttccagctgtaacgacattgtgtgcacggagcagtgtgtcatgagcggacactttgat
aagaaggttcgattctgggacatcagagcagagagcatcgtccaggagctggagctgttt
gggagagtcacgtctctggacctgaaccacgaccgcacagagctgctcacctgctccaga
gacgacctggtgaagatcatcgacctgcgcaccaacgctgtgcggcagacgctcagtgcg
caaggcttcaagtgtggagctgattggacgagagtcaccttcagtcccgacggcagctac
gtggctggaggatcagctgatggagctttgtacatctggaatgtcctcacagggaaagtg
gaccgaactctggaccggaaccacaactctgccattaactctgtgtcctggtcgccctcc
ggagcatttgtggccagcgtggagaaaggcagcaaggccatcctgtggtctgacatgtga
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