Gasterosteus aculeatus (three-spined stickleback): 120822214
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Entry
120822214 CDS
T07457
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120822214
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120822214
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Amastin
Motif
Other DBs
NCBI-GeneID:
120822214
NCBI-ProteinID:
XP_040037624
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Position
VII:complement(7164157..7278840)
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AA seq
688 aa
AA seq
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MEIAEARGASKCVEKMEKEVAPQKRQRCRATAALNIISSLCSVASIAFCILLSINAADVK
NRVVDLQSGNDGQSLVRAPGYSVDDLNSLIDRRVDELFSQRSYENLVKIRTARQTSPECS
CPPGPPGKRGRRGRNGEPGPPGPEGAKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRR
LIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLAGDPGQPGETGLMGLEGPQ
GEKGVLGPPGNPGVDGLKGDVGIPGLDGVPGAKGEMGERGEKGDMGEDGPKGDIGEKGDA
GSSAAGIKGEPGEPGRSGLKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERG
DHGPQGKGERGELGPLGPKGSQGESGTPGHKGSKGETGDKGELGSSGPKGPPGQKGDQGA
TEIVDYNGNIQEALQKITTITITGPPGPPGPIGPAGIKGDRGMPGLPGLDGERGYKGSKG
DMGMPGASGEKGTIGLTGLPGVNGVKGDRGDSGPTGPQGSSIVGSPGAPGPHGPPGPMGP
HGFPGSKGEPGMHGVKGIRGEVGHKGDRGPLGLPGASGLDGKPGIRGMDGPTGAAGPAGP
KGDIGERGVPGEPGPRGPYGLPGAAGTPGLDGSSGLRGEKGDVGERGEKGFRGFKGEKGE
PGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatccaagtgcgtggagaagatggagaaagaagtg
gcgccccagaagcgacaacggtgccgcgcgactgccgcgctgaacataatctcgtcgttg
tgctccgtggcgtccatcgccttttgcattcttctgagcattaacgcagctgacgttaag
aaccgggtcgtggacttgcagagcgggaatgacgggcaaagcctcgtccgcgctcctggc
tactccgtggatgatttaaattcattgatcgaccgaagagtggacgagctgttctcccag
cgctcctatgagaatcttgtcaagatccggactgcgcgacaaacgtcccctgaatgcagc
tgccctccaggacctccgggaaagcgaggaagaagaggccggaatggagagccaggacct
cctggccctgaaggtgccaagggtgaaaagggggatcaaggcgaccagggaccacggatg
gtcttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcgacgg
ctcattaagggagatcaagggcaagctggaccacctgggccacctgggccaccggggcct
cctgggccgagggggcctccaggggacacggggaaggatggacccagaggtgtacccggt
ctggcaggagatccagggcagcctggagaaacaggactcatgggacttgaagggccacaa
ggggagaagggtgtactcgggcctcccggcaaccccggcgttgatggactgaagggggat
gttggcatcccaggattggacggtgtccccggagccaagggtgaaatgggagagcgaggt
gaaaagggcgacatgggtgaagatggaccgaaaggtgatatcggggaaaagggtgatgca
ggctcctctgcagcaggcatcaagggggaacctggagagcccggacgaagtggactaaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagcctgggttc
ctcggcccccagggggagccaggacttccagggctcccgggaactaagggagagagaggc
gaccacgggccacaagggaaaggtgaaagaggagaacttggaccccttggaccaaagggt
tcacagggagagtccggtacacccggccataaaggctcaaagggagagactggagacaaa
ggagaacttggctcttccggtccaaagggcccccctggacagaaaggagaccaaggggcc
actgaaatcgttgactacaatggaaacattcaggaggctttacagaagattaccacaatt
acaatcacgggtcctcctggacctcctgggccgataggacctgcaggtataaagggtgat
cgcgggatgcccggtctgcctggactcgatggtgaaagaggctacaaaggctctaaagga
gacatgggaatgccgggagcttcaggagagaaaggaacaatcggtttaaccggcctgcct
ggtgtaaatggggtaaagggggacaggggagattccggtccgaccggccctcaaggttct
tcaatcgtcggctctccaggggcaccagggccccacggacccccaggacccatgggcccc
catggtttccctggatcaaagggggaacctggtatgcatggcgtgaaggggattcgggga
gaggtgggacacaaaggggatcgtggaccgttgggtctcccgggagcctccggcttggac
ggcaagcccggaatcaggggcatggatgggcccaccggtgcagctggtccagccgggcca
aagggggacataggcgagagaggagtaccaggtgaaccaggaccgaggggaccttatgga
ctccctggagccgctggaacaccgggcttggatgggtcgtcaggcttaaggggagagaaa
ggcgacgttggggaaagaggagaaaagggtttccggggatttaagggtgaaaagggggaa
ccaggtcagccaggtctggacgggctggatgccccgtgccaattgggcccggatggatta
ccaatgcctggatgctggcagaagtga
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