Gasterosteus aculeatus (three-spined stickleback): 120822229
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Entry
120822229 CDS
T07457
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03030
DNA replication
gat03420
Nucleotide excision repair
gat03430
Mismatch repair
gat03440
Homologous recombination
gat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120822229
03420 Nucleotide excision repair
120822229
03430 Mismatch repair
120822229
03440 Homologous recombination
120822229
03460 Fanconi anemia pathway
120822229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120822229
03032 DNA replication proteins [BR:
gat03032
]
120822229
03400 DNA repair and recombination proteins [BR:
gat03400
]
120822229
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120822229
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120822229
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120822229
MMR (mismatch excision repair)
120822229
DSBR (double strand breaks repair)
HR (homologous recombination)
120822229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
120822229
NCBI-ProteinID:
XP_040037659
LinkDB
All DBs
Position
VII:complement(22189588..22218744)
Genome browser
AA seq
610 aa
AA seq
DB search
MSVELTKGAVEALINSPQADSDIILQLLNIRQLSNSSGPSRFRLLMSDGQHSSPSFLLAT
QMNHLNEENLLQPNCVCVVKKTINNTLADGRRVVVVLDMEILQSAAETGGRIGNPTSYDT
TGKKGSPQKPSSRPSVPTSPSPAAVPGSSTTLSSPRVHEKHFAAKSPMKASNTSPSSLAK
VMPISSLNPYQSKWTIRARVTNKSSVRTWSNSRGEGKLFSFEIVDESGEIKITAFNDEVD
KFFSLVEQGKVYFITKATLKVANRQYTTLKNDYEMTLQAHSSIVPCDDTGGIPAVLCDFV
PIAELENREKDSVVDVIGVCKSAEDVSRITTKSSREVSKRALHLIDTTGKEVTATLWGEE
AEKFDGSQQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDLPEAFSLRAWYDEGGYAIDS
QSLTETRSVGSGAKTNWKTLSDVKSEQLGQGEKADYFTCLASVLYIRKENCLYQACPSAD
CNKKVVDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHSAE
TLGQLRDTDKTAFDEVFQKTNFTTHIFRNRVKLETYNDESRVKVTVMEVLPVDHREYSRR
LLSNIRKLAS
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaactcacaaagggagcagttgaagcactgatcaacagcccgcaagcggac
agtgacatcattctgcaattgctgaatatccgtcagctttcaaacagttctggtccgtcc
cggttccggctcttaatgagtgatggccagcactcttcgccttccttcctgttggctaca
caaatgaaccatctgaacgaagagaacctcctgcaacctaattgtgtatgtgtggtgaag
aagaccatcaacaacacgttagcagatggcaggcgtgtggtggttgtgctggatatggag
atcctgcaatcagccgcggaaactggagggaggattgggaatcccacttcatatgataca
acaggtaagaaaggctctccgcagaagcccagctcacgtccttctgtgccgacatcccct
tcgccggcagcagtacccggatcctccaccaccctttcttctccccgagtccatgagaaa
catttcgcggcaaagtcacccatgaaggcgtcaaatacttctccaagttctttggcaaaa
gtgatgccaatttcaagcctcaacccctaccaaagcaagtggacgatcagagcacgcgtc
accaacaaatccagtgtccgcacctggagcaactcgagaggagagggcaagctcttctcc
tttgagatagtggacgagagtggagaaatcaagatcacagccttcaacgatgaagtggac
aagtttttctctctagtggagcagggcaaggtgtacttcatcaccaaggccacgctgaag
gtggccaacagacagtacaccacactgaagaacgactatgagatgaccctccaggcccat
tcatccatcgtgccatgtgacgacactggaggcatccccgctgtgctctgtgactttgtg
cccatcgccgagttggagaacagagaaaaggactccgtcgttgatgtgattggagtgtgt
aagagcgcggaggacgtatctcggatcaccaccaagagcagccgagaagtctccaagagg
gctctgcacctgatcgacaccactggcaaagaggttacggccacgctgtggggggaggag
gccgagaagtttgacggctctcagcagccggtggtcgcgatcaaaggcgctcgcttgtct
gattttggaggccgatctctctccgctttgttcagctcaacagtcatggtcaacccagac
ttaccggaggcgtttagtctgcgggcctggtacgacgagggaggctacgcgatcgacagc
caatctctgacggagacgaggtcagtgggcagcggagcgaagacgaactggaaaacgctg
agtgacgtcaagagtgaacagctgggacaaggagagaaggcggactatttcacctgcttg
gcatcggtgctgtacatccgtaaggagaattgtctgtaccaggcgtgtccgtccgcagac
tgcaacaagaaggtagtcgaccagcagaacggactctaccgctgcgagaagtgcaaccga
gagttccctaacttcaaatacagactcctgctctctgccaacttggcagacttcggggat
aaccagtgggtgacgtgcttccaggagacagctgaggtcctgttaggtcacagcgcagaa
acactgggacagctcagagacaccgacaaaactgcattcgatgaagtctttcagaaaacc
aacttcacaactcacatcttcagaaaccgagtcaagctggagacgtacaacgacgagagc
cgagtgaaggtaaccgtcatggaagtcctgccagtcgaccacagggaatacagcaggaga
ctcctcagtaacatccgtaaattggccagctga
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