Gasterosteus aculeatus (three-spined stickleback): 120822396
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Entry
120822396 CDS
T07457
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b
KO
K10802
high mobility group protein B1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03410
Base excision repair
gat04140
Autophagy - animal
gat04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120822396 (hmgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120822396 (hmgb1b)
09143 Cell growth and death
04217 Necroptosis
120822396 (hmgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gat03036
]
120822396 (hmgb1b)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120822396 (hmgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120822396 (hmgb1b)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
120822396 (hmgb1b)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
120822396 (hmgb1b)
MMR (mismatch excision repair)
Other MMR factors
120822396 (hmgb1b)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120822396 (hmgb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
120822396
NCBI-ProteinID:
XP_040037997
UniProt:
G3PC16
LinkDB
All DBs
Position
I:complement(13649987..13652662)
Genome browser
AA seq
196 aa
AA seq
DB search
MGKDPRKPKGRMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSQKEKGKFE
DMAKLDKVRYEKDMKNYDPPKGQKKKRYKDPNAPKRPPSAFFLFCGDFRPKVKSEHPGLT
IGDTAKKLGEMWNGSSAENKQPYEKKAAKLKEKYEKDVVAYRTKGTVDSPAAATADDDDD
EDEDDDDDDDDDDDDE
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggatcctaggaagccgaagggcagaatgtcctcatatgcctactttgttcag
acgtgccgcgaggaacacaagaagaaacatcccgacgcctccgtcaactttgcagagttt
tccaagaaatgctccgagcgatggaagacaatgtcacagaaagagaaaggcaagtttgaa
gacatggccaaactcgacaaggtgcgttatgagaaggacatgaagaattacgatcccccc
aagggccagaagaagaagcgctacaaggaccccaacgcccccaagagaccaccgtctgcg
ttctttctgttctgtggagactttcgtcccaaggtcaaaagtgagcatcccggtctaacc
atcggggacacagcaaagaagttgggagagatgtggaacggctcatctgcagagaacaag
cagccgtatgagaagaaggctgccaagctgaaggagaaatacgaaaaggatgtcgttgct
taccgcacaaagggcacagtggattcccccgctgccgccacagcagatgatgacgacgat
gaggacgaagacgacgatgatgacgacgacgatgatgacgatgatgagtaa
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