Gasterosteus aculeatus (three-spined stickleback): 120822433
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Entry
120822433 CDS
T07457
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120822433 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120822433 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120822433 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120822433 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120822433 (col4a5)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120822433 (col4a5)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120822433 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120822433
NCBI-ProteinID:
XP_040038061
LinkDB
All DBs
Position
VII:complement(1500816..1526250)
Genome browser
AA seq
1683 aa
AA seq
DB search
MKRPLGSLRRLAAPLLLFALCVAVQRSESAACHGCVGSTCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGGRGEKGSDGLQGPYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVAGCNGTKGEIGYPGNSGIPGQPGRSGPPGVPGEKGDPGDVISANRFGQQGAVGLPGL
PGIPGAPGPAGLQGPLGPPGPRGYEGSPGPPGLPGPKGNMGLNFQGPKGMKGERGTTGPP
GPPGQVGEQKEAKETVIQRGDKGDPGFPGPPGDPGYPGNPGPSGGPKGSKGEPGEAGKRG
KSGKDGDPGPPGFPGGKGDPGLPGPAGRDGERGLKGDRGYPGPPGVIIGGTPGGLIGPKG
EPGYPGSAGIKGDRGQPGLSGPPGEPGRPGTGGGGQPGPPGYPGERGQKGDQGTVGISLP
GPPGRPGSSGPPGPQGPPGPPGSSSGGTDCSTGVPGIPGVQGERGYPGDPGFKGEKGDTC
VNCFRDTSGIPGPPGLAGQPGFPGSPGSPGIKGDRGFSGTPGAVGPPGNPGPLGSPGFPG
EKGDPGEVIAVDGGRGEKGDTGFPGSPGLPGLDGRPGRDGQPGSPGAKGAPGSLLVKGER
GPPGEPGSLGIPGDRGPPGGPGYGPPGSSGEKGVQGVSGRPGGPGSPGSKGEPGVAVSEK
GNPGDRGPPGTPGQPGLRGNPGQPGQDGFPGSPGTKGEPGLPGIGLPGPPGVKGFPGVAG
QPGSPAAPGRPGVDGLPGQPGFPGAKGEPGFGLPGPPGVPGAPGAKGFYGPKGDPGFPGG
PGSPGRSGFDGSPGSKGEPGPSGPPGARGPPGIPDAGAVGPPGPPGLPGQMGPPGYPGSN
GGKGDPGPPGLDIPGLPGDRGSPGFPGSPGAVGAPGPLGGPGRDGSPGQPGQKGDMGLMG
SPGPSGGPGIPGGPGAPGPKGDSGFPGRDGNPGGTGFKGDRGEPGLQGPPGSSQGPENLK
GSKGEPGQPGSPGFSGEKGIAGLPGDPGPGGLDGRPGSPGPPGPKGDPGLSGGPGGPGAP
GLKGSMGEMGFPGPSGQKGLSGQPGRSGSPGQPGGPGFPGAKGEPGSAGVGPPGLSGQKG
EPGQSGFPGGSGLKGTPGSPGLPGVPGGPGPKGDPGLPGFQGSPGSPGPKGLDGGFGSPG
LPGAPGRPGESGRPGGPGFPGDKGQAGRDGIPGPAGIKGDPGLPGYGGPGSPGLPGLPGS
KGDPGLPGPPGVNGFPGSKGDPGFPGSPGPSGNPGPAGPPGQALQGPKGLQGSPGPPGRG
GPSGPPGSPGPQGPRGPAGSGGVKGEKGIAGAPGQPGFAGQKGDSGVPGFPGPPGQPGGS
GQKGDIGLPGVPGFPGPKGDLGAPGGNGLPGDPGGVGLPGPPGEPGFVRDPGQYKGARGA
PGVQGPPGGRGLSGTPGRDGRPGEPGEIGAPGPEGPPGFSGPPGRKGDNGPAGQPGQRGF
SGPPGSDGPPGVPGPPGSGSVAHGFLITRHSQGQDVPFCPQGTGLIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPITGERI
KPFISRCAVCEAPAMVIAVHSQTIQIPSCPSSWEALWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQAETLNTSNLVMRQCY
EPL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgacccctggggagcctgcgacggctcgcggcgcctctgctcctcttcgccctg
tgcgtcgcggtgcagcgatccgagtctgcggcttgccacggctgcgtgggatccacatgt
gactgcagcggagtgaaaggaaccaagggcgagcggggtttcccgggtctcaccggacag
cccggagtcccggggttccccggccccgaggggccgatcgggggcagaggagagaagggt
agtgatggactgcaaggaccttatggtccaaagggaatcagaggaccgtctggattgccg
ggatttccaggaacaccaggacttccgggtctgccggggcaggacggacctccgggcccg
agaggtgttgcaggctgcaacgggacgaagggggaaattggttacccgggaaattcagga
attcctggccagccgggccgatctggcccccctggtgtgccaggagaaaagggcgaccca
ggtgacgtgatctccgccaatcgctttggacagcagggagcggtgggattgcccggattg
cccggcattcctggagctcctggacccgccggtctgcaaggtcccctcggtcctccagga
cccagaggctacgagggttctccaggtcctccaggtctccccggaccaaaaggaaacatg
ggattgaacttccaagggcccaaaggaatgaagggtgaacggggcacgacaggacctcct
ggtcctccggggcaagttggggagcaaaaggaggcaaaagagaccgtgattcagagagga
gacaagggtgatccaggtttccccggtcccccaggtgacccaggctacccaggaaaccct
ggtccctcgggtgggccgaaaggaagcaagggagaaccaggtgaagcaggaaaacgaggc
aaatcaggcaaagatggcgaccccggccctccaggcttccccggaggtaaaggagaccca
ggcctgccaggccctgccggcagagatggagagagagggctgaaaggtgatcgtgggtac
ccaggcccgccaggagtgataatcggtgggacaccaggaggtctgattggcccgaaagga
gagcccggctaccccggctcagccggaatcaaaggagaccgcggccaaccaggcctatcg
ggacctccgggggaaccgggtcgcccgggtactggaggtggaggtcagcctggacctccc
ggctacccaggagagagagggcagaagggagaccagggcaccgtagggatttctctgcca
ggtccgccaggacgtccggggtcttctgggcccccgggcccgcaggggccccccggacct
ccgggctcttcttccggaggaacagactgctccactggagtgcccgggattcccggcgtg
cagggagagagaggctacccaggagaccccggctttaaaggcgaaaagggcgacacctgc
gtgaactgcttcagagacacctccggcatccccggaccaccgggactcgcgggacaaccc
ggattccctggatctcccggctccccagggatcaaaggagaccgaggattttcaggaacg
cctggggccgtcggaccccctggtaaccccggccctctaggttccccgggattccccgga
gagaagggagacccaggcgaggtcatcgcagttgacggtggcaggggagagaagggtgac
accggtttccccggatcgcccggccttcccggtctggacggtcgacccggtcgcgacggc
cagccgggctctcccggcgccaaaggagcacccggctctctgctggtgaaaggagaacga
gggccccccggtgagcccggctccttgggtatcccgggagacaggggtcctccgggaggc
cctggttatggacctccgggatcatcaggagagaaaggagtccagggcgtctcaggaaga
cctggaggtcccggttcgcccggtagcaaaggggaaccgggcgtggcggtgtctgagaag
ggcaatccgggagataggggacctccaggcacgcctggacagcccggcttacgaggtaac
ccgggtcaacccggacaggacggtttccccggttcaccgggaactaagggggagcctgga
ctccccggcatcggactcccgggaccccctggagtcaaagggttcccaggtgtcgcaggc
cagccaggatctcctgccgcaccaggcagaccaggagtagatggacttcctggccagcct
ggatttcctggagcaaagggggagcctggctttggccttcctggccccccgggtgtacca
ggagcacctggagcgaagggcttctacggaccgaaaggagaccccggcttccccggaggc
cccggctcacccgggcgctctggatttgatggctctccgggatcgaaaggtgagcccgga
ccatcgggcccacctggagctcgtggcccacctggaatccccgacgccggtgcagtgggg
ccgccaggaccacctggcctccctggccaaatgggacctccaggatatcccggatcaaac
ggagggaagggagacccgggccctccaggtctagacatcccaggtctgccaggagacaga
ggaagtcccggcttcccaggttcccccggagcggtcggagcgccgggacctctcggagga
cctggacgggacggctcgcctggtcaaccgggtcagaagggagacatgggtctaatggga
tccccaggaccctctggaggaccaggaatcccaggagggcccggcgcccccggacccaaa
ggcgactctgggttccccggcagagacgggaaccctggcggtaccggttttaaaggtgac
agaggtgaacctggcctccagggacccccaggaagcagccagggaccggagaatttaaaa
ggatccaaaggagaacctggacaacccggttcaccaggtttttcaggtgagaaaggcatc
gctggtctccccggtgaccccgggccggggggattggatggacgtcctgggagtcccgga
ccaccaggtcccaagggagatcctggtctctcaggtgggccaggtggtcctggagctcca
ggactaaaaggcagcatgggagagatgggtttcccaggaccatctggacagaagggtcta
tcaggtcagccgggtaggtctggatccccgggacagccgggaggacctggtttccctgga
gctaaaggtgaaccaggctctgctggagttggacccccgggactatcaggacagaagggg
gaaccaggtcagtcagggttcccaggaggttcaggacttaaaggaacaccaggatcaccc
ggtctcccaggtgttccaggagggccagggcccaaaggtgaccccgggctcccaggattc
caaggttcacccggtagccccggtcctaagggtcttgacggtgggttcggtagcccaggt
ctccccggagctcccggtagaccgggagaatccggtcgaccaggaggaccagggttccca
ggagacaagggccaggcaggtcgggacggcatcccgggaccggccggaatcaaaggagac
ccagggcttcctggttatggtggacccggctctcctgggcttcccgggctgccaggttcg
aagggagacccgggtcttcccggcccacctggggtcaacggattcccaggatccaaagga
gaccccggtttccccggatctcctggcccttcaggcaaccccggtccagccgggcctcca
ggacaggctctgcagggccccaaaggactccaaggatcccctgggccaccagggagagga
ggtccctcaggtcctccaggctcccctggccctcagggtccccgagggcccgcaggaagc
ggcggcgttaagggagagaagggcattgccggcgctcctggacagcccggctttgctgga
cagaagggagacagcggcgttcccgggttcccaggcccccctggtcagcctggaggttca
ggtcaaaaaggagacatcggtcttcctggcgttcctggattccccggaccgaagggcgac
ctgggagccccgggaggaaacggccttcctggagaccctggaggtgtcggacttcctggc
cctcctggtgaacccggcttcgttcgggatcccggtcaatacaagggagccagaggagcc
cccggggttcagggcccgcctggtggtcgaggactttccggcacccccggccgagacgga
cgtccaggtgagcctggtgaaatcggggccccgggtccagagggtcctcccggcttcagc
ggcccacccggcaggaagggagataacggaccagctggtcagcccggtcagcgtggcttc
tctggtccccccggttcagacggccctccgggtgtccccggccctccgggatcgggttcc
gtcgcccacggcttcctgatcacgcgccacagccagggccaggatgtgcccttctgcccc
caagggaccggcctcatctacgacggctactccctgctgtacgtgcagggcaacgagagg
gcccacgggcaggacctcggcacggccggcagctgcttgcgccggttcagcaccatgccc
ttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcctac
tggctgtccacgcctgagcccatgccctcgtccatggcccccatcaccggagagcgcatc
aagcctttcatcagcaggtgtgcagtgtgtgaagctccggccatggtgatcgcggtccac
agtcagaccatccagatccccagctgcccttcaagttgggaagctctgtggatcggatac
tccttcatgatgcacaccagcgcgggcgcggagggctccggtcaggccctggcctccccc
ggctcctgcctggaggagttccgcagcgccccgttcatcgagtgccacggccgagggacg
tgcaactactacggcaactcctacagcttctggctggccaccgtggagccgtccgagatg
ttcaggaagccccaggcggagactctgaacacgagtaacttagtgatgcggcaatgctac
gagcccctctag
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