Gasterosteus aculeatus (three-spined stickleback): 120822484
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Entry
120822484 CDS
T07457
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120822484
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120822484
Cell adhesion molecules [BR:
gat04515
]
Immunoglobulin superfamily
ROBO family
120822484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Unc5_NetrinR_N
Izumo-Ig
Ig_PDGFR_d4
Ig_Rha78A_N
Ig_J_second
Fn3_Dep-1_3rd
Motif
Other DBs
NCBI-GeneID:
120822484
NCBI-ProteinID:
XP_040038151
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All DBs
Position
VII:18990566..19064492
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AA seq
1596 aa
AA seq
DB search
MQAVQTLIPFLLISLLCVSQPQWGCHAVDISPDTEKHRGSREVVSQPPASEQDNSVEYKG
SRLRQEDFAPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWSKDGERVETDRDNPRSH
RMLLPSGSLFFLRIIHGRRSKPDDGSYVCVARNYLGQAISHNASLEVAILRDDFRQNPVD
VMVAVGEPAVLECQPPRGHPEPTISWRKDGANLDDRDERITIRSGKLMITNTRKSDAGKY
ICVGTNMVGERESEIAELTVLERPTFVKRPSSVVVLAEESVEFHCVVQGDPVPTIRWRKD
DADLPKGRFETLEDHTLIVRQVTSSDEGSYTCVVENMVGKSESSATLTVHVNTVPPAFAI
RPRNQVVAVGRTVTFQCEATGNPQPAIFWQREGSESLLFSYQPPQPFSRLSVSQMGSLTI
TDVQRSDGGFYSCQALNIAGSVITKALLEVTDSGSDHPPPVIRQGPLNQTVPVDSTVVLG
CQTADSPPPTVHWKKDGAAVSPLDSRLSVADTGSLEIRYAKLGDTGLYTCVASSPHGEAS
WTAYVQVEEFGVVVQSGQPMDPYLIPSAPSKPEVTDVSRTAVTLSWKLKPDGGATPTSYL
IEAFSYALGSRWVTLAEHVKTQTFVLRNLKPAAVYLFMVRAVNAYGLSDPSPISDSVRTQ
DGTSTMQGVDHRHIQRELGDVVIHLHTPTVVSSSAVRVQWMVEQQSPYIQGYKVLYRASA
EHGQPEGQWSVLDVHAPREDGLVIGQLTRGSIYEFKVRPFFDEFQGADSEVKVVKTLEEA
PSRAPQGVTVTKSDANGTAILVAWKPPPEWEKAGVIQEYKIWCLGNESRYHVNQSVDGST
FSVLISSLTPGVRYSVEVAASNGAGAGVKSDVTFFQLDSTGQMMDISEEKDTLSQISDVV
RQPAFIAGIGATCWLVLMIFSVWLYRHRKKRSGLSSTYTGIRKVPSFTFTPTVAYQRGES
VCSAGRPGLIGMGEPLNQLWLPDNWPNACANHKDCSINCCNNGNGTSDSNMTTYSRPADC
IANYGNHPDNKQGGQLSSETAIYSDVNLSNKLNEIKTFNNSDFCYASPGGDSAATYEPIP
YATTQLIQASIKSKTGPGGAIAEKMDMPCWKQPPNPPPIPKEMAAQMQYNIFEQNMLNKD
HFQGSEGMIHPKTIPYNQSRDHSTGGSHHSSDRGSNSTSGSQNQKKGTRAPKIPKHTAAT
WGEAPPPPPATAWDCDEYSLPMERSFDPAERMEGCPIPPVRAAPSSPTEVSYSHPLNNTP
QGDLSNGMHDGTDHLSEHIAGHLRPLSPTHTYSSIPFCMDTDVQEEDEEEEAEEETDAEL
AESHYRQHPNSQKHKHQLHHPTPHKLLLHGLEQTPASSSGDLDRSVTGSMVNSWGSASED
NISSGRSSVVSTSEGSFFTDGDFNQAVASSRDIVGLRMCRYPEESGRRLQRPSSPMSTDS
NMSPAITHKRPRRHKQNQSGEQGYQPKDVFNDDSCMPMNFSSQISHCDYNVRGATLPRMG
SGEARGRRGSTGTHKAREAASEQRESHDKHKTPAGGKGSSKSQQHSELGDVLLYSRPCFP
SGKAQREPDDTTSPSFMSCGDSRTKQGEQKEEFLKS
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctgtccaaacactcatcccattccttctcatcagccttctctgtgtcagtcag
ccgcagtggggatgccatgctgtggacatttcaccagatacagagaaacacagagggagc
cgagaggtcgtctctcaaccacctgcatctgaacaggacaacagcgttgagtacaaaggg
tctcgtcttcgccaggaggactttgctccccgcattgtggaacacccctctgacctcatc
gtgtctaagggggaaccagccactctcaactgcaaggccgagggccggccgaccccgacg
gtggaatggtccaaagacggggagcgtgtggagacggaccgcgacaacccccgctcgcac
cgcatgctgctgcccagcggctccctcttcttcctgcgtatcatccacggacggcggagc
aagcccgacgacggcagttacgtgtgtgtggcacgaaactatctgggccaggcgatcagt
cacaatgcatccctggaagtagccattttgcgcgatgacttcagacagaacccagtggac
gttatggtcgcagtgggggagcccgcggtgttagagtgccaaccacctcgtgggcaccct
gaacccaccatctcctggaggaaagatggtgccaacttggatgacagagatgaacgcatc
acaattcgcagtggcaagctgatgatcaccaacaccaggaagagtgatgcagggaaatac
atctgcgttggaaccaacatggtgggggagagggagagcgagatcgctgaactcactgtg
ctagagcgcccaacctttgtgaagaggcccagcagtgtggtggtgctggcagaggagagc
gtggagttccactgtgtggttcaaggagaccctgttcccaccatccgctggaggaaagat
gacgctgacctgcctaagggcagatttgaaaccttagaggaccacacattaattgtccgt
caagtgacctcttcagatgagggctcctatacatgtgtggtggagaacatggttggaaag
tctgaatcatccgccacgctcactgtacacgtcaatactgtgcctccggcatttgccata
cgccccaggaaccaggtggtggcagtgggcaggacggtcaccttccagtgcgaggccact
ggcaacccacagcctgccatcttctggcagagggagggcagtgagagtctcctgttctct
taccagccacctcagccctttagccgcctgtccgtctcccagatgggcagtctgactatt
accgatgtgcagcgctctgatggcggcttctacagctgccaggccctcaacatcgctggc
agtgttattaccaaagcactgctggaggtcacagactctggatccgaccacccgcctcct
gtgattaggcaaggcccactcaatcagaccgtccccgtggacagcacagtggtcctgggt
tgccagacagcggactctccacctcctacggtccactggaagaaggacggtgctgccgtg
tctccactggactcccgcctgtctgtagcagacacgggatcactggagatccgctacgct
aagctgggcgatacgggcctctacacttgcgtagcttccagtccacatggagaggcttcc
tggacggcttacgtacaggtggaggagttcggagttgtggttcagtccggacagccaatg
gacccgtacctgattcccagtgctccatctaaacccgaggtgactgacgttagccgcacc
gctgtcactctgtcgtggaaattgaaacccgacggcggcgcaacacctacgtcttacctg
atcgaggcattcagttatgcgttgggcagcagatgggtgactctcgccgagcacgtaaag
acacagaccttcgtactgaggaacctgaagcctgcggctgtctacctcttcatggtcaga
gcggtgaatgcctatggcctcagcgaccccagtccaatctctgactctgtcagaacacaa
gacggcacatccaccatgcagggagtggatcaccgacacatccagagggagcttggcgat
gtggttatccacctgcacacgccgacagtcgtgtcatcttctgctgttagggtgcagtgg
atggtcgaacagcagtcgccatacattcagggttacaaggtgctttacagggcgtccgct
gagcacggccagccagagggccagtggagcgtcctggatgtgcacgccccacgggaggac
ggcttggtgatcggtcagctcacgcgggggtccatctacgagttcaaagtgcgccctttc
tttgatgagttccagggagctgacagtgaggtgaaggtggtcaagacattagaagaagcc
cctagcagagcaccccagggcgttacagtcacaaagagtgatgccaatgggaccgccatc
ctcgttgcttggaaaccacctccagaatgggaaaaagctggagtcattcaggagtacaaa
atctggtgcctgggcaatgagagtcgatatcatgtgaaccagtcggtcgacggctccacc
ttttccgtgctcatctccagtcttacgccaggagtccgttacagcgttgaggtcgcagcc
agcaatggcgctggagccggggtcaagagtgatgtcactttttttcaattagactctacc
ggacagatgatggatatcagtgaggaaaaagacacgttgtctcagatttcagatgtggtg
aggcaaccggcatttattgcaggcattggcgccacctgctggttggtcctcatgattttc
agcgtgtggctctaccgtcatcgcaagaagagaagtggcctcagcagcacgtacaccggc
atccgcaaagtgccatcattcacctttacgcccacagtggcgtatcaaagaggggaatct
gtgtgcagtgctggaagacctggccttatcggcatgggtgaacctctaaaccagctgtgg
ctgccagacaattggccgaatgcatgtgccaatcacaaggactgtagcatcaattgctgc
aataatggcaatggcaccagtgacagcaacatgacaacatacagccgaccagctgactgc
atagcaaactatggaaatcatccagacaacaaacaggggggacagcttagttctgagacg
gccatttacagcgacgtgaacctctccaacaagcttaatgagatcaaaacgttcaacaac
tccgacttttgctacgcaagtccagggggagattcagcagctacatatgaacccatcccg
tacgccaccacacagctaatccaggccagcattaagagcaagacaggccccggtggtgct
atagcagagaaaatggacatgccctgctggaaacagccccccaacccgcctccaatacca
aaggagatggcggcacagatgcagtacaacatatttgagcaaaacatgctaaataaagac
cattttcaagggagtgaaggaatgatccatcctaaaactattccctacaaccagagccgt
gaccacagcacaggaggctcacaccacagctccgacagaggcagcaacagcacctcgggg
agtcagaatcaaaagaaaggaacgcgggccccaaagatcccgaaacatactgcagcaacg
tggggagaagctccgcctcctcctcctgctactgcctgggactgtgatgagtacagccta
ccgatggaaaggagttttgatccagcggagagaatggaagggtgccccatcccaccagta
agagcggcaccctcatctcctactgaagtgtcctacagtcacccactgaacaacacaccc
cagggagacctgagcaacggcatgcacgatggaacggatcacctcagcgaacacatcgcc
ggccaccttcgccctctttccccaacgcacacctatagctccatacccttctgcatggac
accgatgtacaggaagaggatgaggaagaggaggcagaggaggaaacagacgcagagctt
gctgaaagtcactacagacaacaccccaactcgcagaagcacaaacaccagctgcaccac
ccgactccacacaagctgctccttcacgggctggagcagaccccagcctccagctccggg
gatctggacagatccgtcacagggtccatggtcaacagctggggctcggcgtccgaggac
aacatctcatctggcaggtccagcgttgtcagcacttcggagggatccttcttcacggac
ggcgacttcaaccaggcagtggcctcttcacgggatattgtgggcctgcgcatgtgcaga
tacccagaggagtcaggccggcggctccagcggccgagcagccccatgtccactgacagc
aacatgagtcctgcaataacacataaaagacccagaaggcataaacagaaccagtctggt
gaacaaggctaccagcccaaagatgtcttcaacgatgactcctgcatgcctatgaacttt
tccagccagatatcccactgcgactataatgtgaggggggccacgctgcctcggatgggc
tcgggggaggcccggggtcgccgcggcagcactgggactcacaaggccagggaggccgca
tcagagcagagggagagccacgacaagcacaagactccagcgggagggaaaggaagcagc
aaaagccaacagcactcagaacttggagatgtccttctgtacagtcgtccctgcttccca
tcagggaaagctcagagggaacccgatgacacaacttcacccagcttcatgtcgtgtgga
gactcaaggaccaaacagggagaacagaaggaagagttcctgaagagctaa
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