Gasterosteus aculeatus (three-spined stickleback): 120822564
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Entry
120822564 CDS
T07457
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03440
Homologous recombination
gat03450
Non-homologous end-joining
gat04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120822564 (rad50)
03450 Non-homologous end-joining
120822564 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
120822564 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gat03032
]
120822564 (rad50)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120822564 (rad50)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120822564 (rad50)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120822564 (rad50)
BRCA1-C complex
120822564 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
120822564 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
zf-met
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
120822564
NCBI-ProteinID:
XP_040038271
UniProt:
G3QBX6
LinkDB
All DBs
Position
VII:25522275..25536900
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVITFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVSGEKVTISRSMSCTQKAKHYTFKSLEQVISR
IKDGEKKSLSSKCVEVDREMISAMGVSKAVLNNVIFCHQEEANWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRVKKGHTVKECQLELRYLKQNKEKAHQIRETVATKEAQLMASRDS
IQQIERQTEPLEARMADIETKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DKQLQDSYQNHQRTVREKERRLTECQKDLEKAGRECQRLHRVKADLLVEQGSLQLKADHH
TQNIKNRDNQVRSLSSYLEMEGFDRPPFSALQLESFHQHVAQRLEQERVAINQVMADLQE
KEQQKQQSIDEMRDKKTGLERTAELKGDMQGKKQQELRNIRAELQRLEGSSSRLQELENE
LAKVERELKSAVQSSNVEALKAEVVELQSEKVELDRTQRKLDQEMGMLNTHTTARTQMDM
LKKDKTEKEEQVRKIKSRHSEELVSLLGHFPNKRELEDWIYGKSKEINGTRDRLSKLHKD
LASSEQNKSHIAAEVRKKEQQLASDEEKFFNVCGSQDLEQDLGKLREDLEKISKQRAMLA
GATAVYTQFISQLTEETEPCCPVCQRTFPSDSDLQEVISDMQSKLRLVPDKLKNTEQDLN
RKEQRRDEMMALRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGNVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKELEKKIAQQAAKLQGVDLTRTVQQVSREKQETQHKLD
TTSSKMELKRKLVQDQQDQIQLLKSAVNETREEKLQLSSDMQKQQQLEEQCIEFATELQA
LTRDIREAREQLSPLSAALEKLQQEKQELVEHKRQKQEEGRDKITTIKDKVKEISNLVRD
ITKYVDDGKDEYKEQKEAELQETNTQLHEAEKDKEKVNKEMGNVRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKREALMKDMGNMQVLQLRHEHREAERKLEELKKNRSIAFGRQKG
FEEEIMGCRKELREDQYDKADELYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIVRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRVYNYRVVMVKGDTPLDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILSLDEPTTNLDRENIESLAHALVEIIKSRSSQR
NFQLLVITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSIASLTTYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctcggggtgaggagctttgggattgaggataaa
gacaaacaagtcattacattcttcaccccgctgaccgtgctggttggacccaacggagca
ggaaaaacgactattattgagtgcctgaagtatgccacgtcaggagaacttccccctgga
tctaaaggaggtgcatttgttcacgatccaaaggacgcccacgagacggacgtgcgggca
cagattcgactcttattcaccgatgtcagcggagagaaagtgaccatcagccgctccatg
tcctgcactcagaaggcaaagcactacaccttcaaaagcttggagcaggtcatttccagg
ataaaggacggggagaaaaagagcttgtcgtcaaagtgtgtagaagtggatcgcgagatg
atctccgcaatgggcgtgtcgaaggctgtgctgaataacgtcatcttttgtcaccaagaa
gaggccaactggccgcttagcgagggcaaagcgctcaaagaaaagtttgactccatcttc
gctgcaaccaagtacatcaaggctctggagacgatgcgtcagctacgtgtcaaaaagggt
cacacggtcaaagagtgtcaattggagttacgctacctgaagcagaataaggagaaagcc
catcagatcagggaaaccgtggccaccaaggaggcccagctgatggcgtctagagacagc
atccagcagatagagcgccagactgagccactggaggctcgaatggccgatatagagaca
aaactggggaaagtaatgaagctggacaatgacatcaaagctttagacagccggaagaaa
cagatggaggaagataacaaggagctggaggaaaccatggaacaggtgttccagggttca
gacaagcagctgcaggatagttaccagaaccaccagaggactgtgagagagaaggagcgc
aggttgactgagtgccagaaggatctggagaaagctggacgggagtgtcagagactccac
agagtcaaggctgatctcctggtagagcaaggttctctacagctgaaggctgaccaccac
actcaaaacatcaagaaccgggacaatcaggttcgctcgttgtcgtcctatctggagatg
gagggtttcgaccggccacccttcagtgcccttcagctagagagcttccatcagcacgtc
gcacagagacttgagcaggaaagagtggcaatcaatcaggttatggccgacctgcaggaa
aaagagcagcagaagcagcagtccattgatgaaatgagggacaagaagactggcctggag
agaacagcggagttgaagggagacatgcagggaaagaagcagcaggaactgaggaacatc
agggcagagctgcagaggctggagggttcgtccagccgcctgcaggaactggagaacgag
ctggctaaagtggagcgtgagctgaaaagtgcagttcagagctccaacgtggaggcgctg
aaggcggaggtggtggagctccagagcgaaaaggttgaacttgaccgcacacagagaaag
ctcgaccaggagatggggatgctcaatacgcacaccaccgcacgcacccagatggacatg
ctgaaaaaggacaagacggagaaggaggagcaggttcgtaagatcaagtctcgccacagt
gaggagctggtgtcattgctaggccacttccccaacaagagagagctggaggactggatc
tatggcaaatctaaggaaatcaacggtaccagggacagactttccaaactccataaggac
ctggcatccagtgagcagaataaaagccacattgctgctgaggtgcggaaaaaggagcag
cagttagccagcgacgaagagaagttcttcaacgtgtgcggcagtcaggacctggagcag
gacctgggcaaactacgagaggatctggagaagatctccaaacaaagagccatgctagcc
ggagccaccgctgtgtacacgcagttcatcagccagctgaccgaggagacggagccctgc
tgccccgtgtgccagcggaccttcccctccgactctgatctgcaggaagtcatcagcgac
atgcagtccaaactccgcctggtgcccgacaagctgaaaaacacagagcaggacctgaac
aggaaggagcagcggagggatgagatgatggctctccgacctgtcaggcagtccattgta
cagtttcaggaaaaggagctgccggaattgaggaaccgcttgcagactgtgaacagagag
atcgagaggctgaagggcaacgtggaggagcaggagactctgctcggtaccctgatgtct
gaggaggagacggccaaggcctgcctgcaggacatctctctcatggacagatacctgatg
gaccttaaagagttggagaagaaaatagctcagcaagcagccaagcttcagggagtggac
ctgaccagaaccgtccagcaagtcagtcgggagaaacaagagactcagcacaagctagat
accacctccagcaagatggagctgaaacgtaagctggtccaggaccagcaggatcagatt
cagttgctgaaaagtgctgtaaatgagacccgggaagagaaactgcagctgagcagtgac
atgcagaaacagcagcagctggaggagcagtgcatcgagttcgccactgaactgcaggcc
ttaaccagggacatcagggaggcgagagaacagctctcccctttgtctgccgccctggag
aagctgcaacaggagaagcaggagctggtggagcacaagaggcagaagcaagaagagggg
cgggacaagatcactaccattaaagataaagtgaaggagatctccaacttggtcagagac
atcaccaaatacgttgatgacggcaaagatgaatacaaagagcaaaaagaggctgagctt
caagaaaccaacacccagctccacgaggctgagaaggacaaagagaaggtcaacaaggag
atggggaacgtccgtcaggacatagacactcaaaaggtccaggagcgctggttgcaggac
aacttgaccttgaggaagcgtgttgaggaactgaaggaggttgtggcgaaacgcgaggct
ctaatgaaagacatgggcaacatgcaagtgctgcagctacgccacgaacaccgtgaggcc
gaacgcaagctggaggagctgaagaagaaccgcagcatcgcttttggtcgtcaaaagggg
tttgaggaggagattatgggttgcagaaaagagctacgagaagatcagtacgacaaagcc
gatgagctctacaagaacaagatgataaccatgaggacgaccgagctggtcatcaaagac
ctggatctctactataaggccctcgatcaaaccatcatgaaattccacagcatgaagatg
gacgagatcaacaagatcgtccgagatctgtggcgcagcacctacaggggtcaagacatt
gagtacgtggagatcaggtctgatgtcgacgaaaacgcgtccgctggagtgaagcgccgg
gtttacaactacagagtagttatggtcaaaggggacacgcctttggacatgaggggacgc
tgcagtgccggacagaaggtgttggcgtccctgatcattcgtcttgccctggccgagacc
ttctgtctgaactgtgggatcctgtccctggacgagcccaccaccaacttggaccgagaa
aacattgagtcactggcacacgccctcgtagaaatcatcaagagtcgctcgagccagcgc
aacttccagctgctggtcatcacccacgacgaggactttgtggagctgctgggccgctcg
agctacatcgagcacttctaccgcatccgaaagaaccaggaccagaactccgagatcacc
aagtgcagcatcgcctccctcaccacctatctccactga
DBGET
integrated database retrieval system
