Gasterosteus aculeatus (three-spined stickleback): 120823879
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Entry
120823879 CDS
T07457
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120823879 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120823879 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
gat04131
]
120823879 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
gat03029
]
120823879 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
gat04812
]
120823879 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120823879 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
120823879 (si:dkey-110c1.10)
Membrane trafficking [BR:
gat04131
]
Others
Actin-binding proteins
Myosins
120823879 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
gat03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120823879 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
gat04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120823879 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
120823879
NCBI-ProteinID:
XP_040040268
LinkDB
All DBs
Position
VIII:17411398..17422387
Genome browser
AA seq
1647 aa
AA seq
DB search
MTSLDLYSKGATVWLPDPDAVWVSGLLLQDYSPVEKHLLLELSDGREARYPVGSPSDLPP
LANPDILEGENDLTALSFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVAINPYEQLPIYGE
EVIDAYSGQDAADMEPHIFSVAEEAYRTMTREENNQSIIISGESGSGKTVSAKFTMRYFA
VVGGASQQTTVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRNGDIIGANMRT
YLLEKSRVVFQASAERNYHIFYQLCASRALPEMRSLKLDAPERFRYTSRGGEMHIPGTDD
LLDLERTCNALTVLGVLPDQRTELFRILAAVLHLGNVDIQASGRTSERSYIDADDRALAV
FSKLLGVEGPQVAHWLCHRRLAVGGEALVKPVSGQQALEARDALAKHIYGQLFTWTVRRL
NSALRAHREPARSFIGVLDIYGFETFDRNSFEQFCINYANEKLQQQFNRHVFHLEQEEYV
REELSWSRIEFSDNQQCLNLLEGQLGVFDLLDEECRMPKGSDESWVLKLYDQHLSSKRHP
HFQKPRMSNGAFVILHFADAVQYECDGFLGKNRDTVFEELVNVLKASQSELVAELFQQQG
DASSAAEDRSIGSGRRAAREHKLTVGSQFRRSLQMLMDALDGTTPHYVRCIKPNDLKEAF
TFDPRRTVQQLRACGVLETIRISAAGFPSRWTYEEFFSRYRLLLRGLRGQEHAGASCRQA
LPGLIPDPDQYCFGKTKVFFRAGQVALLERLRAERLRVAAVIAQSRVRGWLARIRHSRIR
RATVTVQRYCRGAAARRLALTLRYTKAALVIQKTHRMVVVRQMFLTLRQAAVTIQAFTRG
TSARFRYRLLVAERAAVLLQARVRAWLARRTYRRVRAAVVFTQCCARRRAARRALMKLKT
EARSVEKFRELNKGMEVKLMQLQLRADQEAREAAALKETLHAERQAASAELEALRATVQK
LGSQKREKPRPCTVTSEKEAEERRRAEEKAAQEILQLTQELQVLQREKDGFDKEREDLST
RLLEQEKAQEECVHRAVTQETAALRTELDEERRKYQGLLREFTRLEQRYDNLREMSLLTE
RTAGHRRTDSTCSLSSEPPSPTLLSPQFPGPLSPFRSASPDPEEFRRVGVAPPSARGAGT
PMDQLMETTDVARDVKMKGEDLAHAYDAVRVANKFLESQLRDQCAQREEELEALRGQLGR
AIAASCPAEQQQELLEAREQECVRLRRELKELRNTVSLRRLVPQGVNPETSSCPSRATPA
TVSGLLECRKGDDAKLLKNLITDLRADGALPLPPGLPASVLFLCVRQADCSGDQTHARAL
CAAAVTAVKAALKKHSSDVDMTALWLKNACLLHDLLTQHSPKQSLNSGEVVPLASDLGDS
MRALSDLRIQAYQQLLSVAERRLQNIIVPALLESENITGLSGSAGKPGPSRKRAGSDPRA
AAVGGDARTMSAVLRELGALHAALSRQDLPPALMEQAFSQLSYLISASAFNSLLLRKDMC
CWSRGMQIRYNVSLLEEWLRGRGLQAGGAAAALEHLIQAVQLLQAGKKSDRDAQALVQSC
TALSSQQIVKILTLYTPQSDLEERVSLNFIRTVQGHLKGRSEGPTPQLLMDVRRVFPVTF
PYSPPAVLHAEQLVIPESLRISFLRRV
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgctggacctttacagtaagggagcaactgtgtggcttcctgaccccgatgca
gtttgggtgtcaggcctgctgctccaggactacagtcctgtagagaagcacctcctgcta
gagctctccgatggaagggaggcccggtacccggtcggttccccctcggacctcccgccg
ctggcgaaccccgacatcctggagggggagaacgatctgacggccctgagcttcctccac
gaacccgcggtgctgcacaacctgcgggttcgattcctggactacagcagcatctacacg
tactgcggcatcgtgttggtggcgatcaacccctatgagcagctccccatatacggagag
gaggtgatcgacgcctacagcggccaggacgcggccgacatggagccccacatcttttct
gtggcagaggaggcctaccgcacaatgaccagggaggagaacaaccagtcgatcatcatc
agtggggagtccggctcggggaaaaccgtctcagccaaattcaccatgagatactttgct
gtggttggaggagcgtcgcagcagaccaccgtggaggagagagttctggcctccaacccc
atcatggagtccatcgggaacgctaaaaccactcgcaacgacaacagcagccgcttcggg
aagtacatcgagatcggcttcggcaggaacggggacatcattggggcaaacatgaggacg
tatctgctggagaagtctagggtggtcttccaagcgtcagctgagaggaactaccacatc
ttctaccagctgtgtgcctccagagccttgcctgaaatgagatccctaaaactggatgca
cccgagcgtttccgctacaccagccggggaggagagatgcacatccctggtaccgatgac
ctgctggacctggagcgcacgtgcaatgccctcaccgtcctgggcgtgctgcccgaccag
cggacagagctcttcaggatcctggcagctgtcctgcacctgggaaacgtcgacatccaa
gccagcgggagaacgtctgaacgcagttacatcgatgcggacgaccgagccctggcggtc
ttctccaagctgttgggcgttgaaggcccccaggtggcccactggctgtgtcatcgcagg
ctggcggtcgggggagaggcgctggtcaagcccgtgtccggccagcaggccctagaagcc
cgggacgcgctggccaaacacatctacggccagctgttcacctggaccgtccgcaggctc
aactcggctctgcgcgcacacagggagccggccaggtccttcataggggtcctagacatc
tacgggtttgagaccttcgaccgcaacagtttcgagcagttctgcataaattatgcaaat
gagaaactgcaacagcagttcaaccggcacgtgttccacttggagcaggaggagtacgtg
cgggaggagctgtcctggagcaggatcgagttcagtgacaatcagcagtgcctcaatctg
ttagagggacagctgggcgtgtttgacctgttggacgaggagtgcaggatgcccaaaggg
tcagacgagagctgggtgctgaagctgtacgatcaacacctgagcagcaagcgacacccc
cacttccagaaacctcgcatgtccaacggcgccttcgtcatcctgcactttgctgacgcg
gtgcaatatgaatgcgatggctttttaggcaaaaatcgagatacggtgttcgaggagctc
gttaacgtcctcaaagcaagtcagtcggagctggtggccgagttgttccagcagcaggga
gacgcctcctccgcggccgaggaccgaagcatcggctcggggagacgagccgccagggag
cacaagctgaccgtgggctcccagttccgtcggtccttgcagatgctgatggacgctctg
gacggcaccacccctcactacgtccgctgcattaaacccaacgacctgaaggaagctttc
acgtttgaccccaggaggacggtccagcagctgagggcttgcggggtgctggagacgatc
cgcatcagcgctgcgggttttccatccaggtggacgtacgaggagttcttcagccgatac
cgcctcctgctccgaggcctgcggggtcaggagcacgccggggcctcgtgcagacaagcg
ctgcctgggctcatcccggacccggaccagtactgcttcggaaagaccaaagtgttcttc
cgggccggtcaggtggctctcctggagaggctgagggccgagaggctgcgcgtggccgcc
gtgatcgcccagagccgggtcagagggtggctggcgcggatccgacactcgaggatccgt
cgggcaactgtgaccgttcagagatactgcagaggagccgcggccagacgacttgcgttg
actctgcgctacacaaaggctgctttagtgatccagaagacccaccgcatggtggtggtc
cggcagatgttcctcacactccgacaggccgccgtcaccatccaggccttcaccaggggc
acgtcggcccgcttcagatacagactgctggtggcggagcgggccgccgtgttgcttcag
gcgagagtgcgcgcgtggctggcgaggcggacgtacaggcgagtacgcgcggcggtggtc
ttcacgcagtgctgcgctcgccgccgggccgcgaggagagcgctgatgaagctgaagacg
gaggcccgctcggtggagaagttcagggagctcaacaagggcatggaagtcaaactgatg
cagctgcagctgagagcggaccaggaggccagggaggctgcagccttgaaagagacgctg
cacgccgagcgacaggccgccagcgccgagctggaggctttgagggcaaccgtgcagaag
ctcgggagccagaaacgggagaagcctcggccctgcaccgtcaccagcgagaaggaggcg
gaggaaaggaggagagctgaggagaaagctgcccaggagatccttcaactgacacaggag
ttgcaagtcctgcagagagaaaaggacggttttgacaaagagagagaggatctctccact
cgcttgcttgagcaagaaaaagcacaagaagagtgtgtgcaccgggctgtgactcaggag
actgcagctctgaggacggagttggacgaggagaggagaaagtaccagggcctcctgaga
gagttcaccagactggagcaaagatacgacaacctgagggagatgagtctgctcaccgag
cgcactgcgggccacagaaggacggactccacctgcagcctgagctcggagcctccctcc
cccactctgctgtctccccagttccccggcccactgtcacccttccggtctgcctccccc
gacccggaggagttccgccgggtcggcgtggcgcctccctccgcgcggggcgccgggacg
ccgatggaccagttgatggagacgacggacgtggccagagacgtgaagatgaaaggagag
gacctggcacacgcgtacgacgccgtgcgagtggctaacaagtttctggagagccagctg
agggaccagtgcgcccagagggaggaggagctggaggctctcaggggccagctaggtcga
gcgatcgctgcttcttgccccgccgagcagcaacaggaactactcgaggccagagagcag
gagtgcgtcaggttgaggagagagctgaaggagctcaggaacacagtctcactcagacga
ctcgtgccacaaggtgtcaacccggagacgtcctcctgtccctcccgggcgacgccagca
acagtctccggtctgctggaatgtagaaagggagacgatgccaagctcctcaagaacctc
atcacagacctccgggctgacggcgccctgcctctgcctcccggtctgcccgccagcgtt
ctcttcctgtgcgttcgccaggccgactgcagcggagatcagacgcacgcccgcgcgctc
tgcgccgccgccgtcaccgccgtgaaggcggctcttaagaaacatagtagcgatgtggac
atgacggctctgtggctgaaaaacgcctgtctgctgcacgacctgttgacccagcattcc
ccaaaacagtcccttaactcgggcgaagtggttccactggcatccgacctcggagactcg
atgcgcgccctgagtgacctccgtatccaggcctatcagcagctcctttccgtcgctgaa
agacgtctgcaaaacatcatcgtccctgctctgttggagagcgagaacatcacaggtctg
tccggctcggcgggaaagccggggccgtcccgaaagcgagcgggttcggacccccgggcg
gcggcggtggggggcgacgctcgcaccatgtcggcagtgctgagggagctgggagccctt
cacgctgctttgtcccgccaggacctgcccccggcgctgatggagcaggccttcagccag
ctgagctacctcatctccgcctccgctttcaacagcctcctgctgaggaaagacatgtgc
tgttggagccgtgggatgcaaatacgctacaacgtcagcctgctggaggagtggctgcgg
ggccgaggcctgcaggcagggggcgctgcggccgcactggagcacctcatccaggcggtc
cagctgctgcaggccggcaagaagagcgatcgggacgcgcaggccctcgttcagagctgc
accgccctgtccagccagcagatcgtgaagattctgaccctctacactccccagagcgac
ctcgaagaaagagtctccctgaatttcatccgtaccgtccaggggcatttgaaaggccgc
tccgagggtccgaccccccagctgctcatggatgtgaggcgagtgttcccggtcacgttt
ccctactcgcctcccgccgtcctccacgcagagcagttagtcatcccagagtccctcagg
atctccttcctccgcagagtctga
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integrated database retrieval system
