Gasterosteus aculeatus (three-spined stickleback): 120824012
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Entry
120824012 CDS
T07457
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gat01002
]
120824012
Peptidases and inhibitors [BR:
gat01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
120824012
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
120824012
NCBI-ProteinID:
XP_040040490
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Position
I:complement(27348675..27372772)
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AA seq
1207 aa
AA seq
DB search
MVLSLHWLLLLWGLQGLLAQDYEEDYGEEVVTTKKKKTKLNPSNVIPENGKSLVSEECNL
ELAFLIDSSESAKDNHAQEKRFATEVMDRLQNLRLQTGRGLRSRAALLQYSSHVIVEQTF
RQWKGIDDFKARIAPIAYIGHGTYTTFAITNLTRIYLEESEPTSIKLAVLLFDGISHPRN
PDISSAVADAKNQGVRFFTVGITPEANLPANVAQLRLIASSPASRYLHNLQDGGVVDKFI
NEITALADEGCPMAQSQCKCEKGERGPSGPPGKKGRPGEDGSPGSKGQKGEGGLSGLPGR
EGAEGKSGYKGEKGVRGECGTPGIKGDRGPEGTIGPRGNRGLQGSLGPPGDIGPEGTMGK
KGERGLSGPPGIQGETGIGLPGPKGDAGYQGQTGSPGPPGLGEHGPPGPQGPQGVSGERG
LTGEGLPGPKGERGLDGPRGLRGQPGAGIKGDKGDFGAPGLPGPLGLPGAGIQGEKGVEG
PRGPPGGRGQRGEGFPGSKGDQGLPGEVGAPGERGAGDAGAKGEPGSTGLSGLPGLPGED
GAPGQKGESGPVGLRGLEGAAGIGTQGEKGDQGQRGIRGLAGPAGIAGPSGPKGEPGTQG
RGGLPGPPGRFVSGPKGDLGPSGPPGPLGETGYGLPGPKGDRGDSGPAGPFGPKGDGYPG
PVGPPGLPGLPGEPGQEGLGIPGPKGDVGFRGLPGAPGPPGEGLQGPLGNPGRPGAPGPT
GPQGQGVQGPKGEQGAQGVTGPRGVPGEGFPGAKGDRGSSGERGLKGIKGEFGDSGSDGK
PGQPGVKGEAGLTREDIIRMIKEICGCGIKCKERPMELVFVIDSSESVGPENYEIIKDFV
NALVDRITVGRNATRIGLVVYSLEVKLVFNLARYVTKQDIKQAIRNIPYMGEGTHTGTAI
RKATQEAFYSSRVGVSKVAIVITDGQTDKREPVKLDLAVREAHAANIEMFALGIVNISDP
TQAEFMMELNLIASHPDAEHVFLIDDFNTLPALESKLVSQFCEDEKGTAIYNGVINGYNG
YGNNGNYAGGGYEYRPGTEQQVLSSRPSATNTGSTIHTDGGRVDTTLHVSKGSSTGHGGG
GQSALTDAHVGNERGDTFNRNTSVTRTGEDSSSTQGSSSSSSSKIMTSSGVSVQQEPAPR
PALPKETVPLDPRCGLVLDQGTCRDYNIRWYYDKQANACAQFWYGGCSGNRNRFDTEGEC
RRTCVLV
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggtcctctcgctgcactggctcctgctactgtggggacttcaaggtcttttggctcag
gactacgaggaagactacggtgaagaggtggtgaccaccaagaagaagaagaccaaacta
aatccatccaatgtaatacctgaaaatggcaaatctctcgtcagtgaagaatgcaatttg
gagctagcctttctgatcgacagctcagagagcgccaaggacaaccatgcccaggagaag
cgcttcgccaccgaagtgatggaccggctgcagaacctgcggctgcagacgggccggggc
ctcaggtcccgggcggccctccttcagtacagcagccacgtcatcgtggagcagaccttc
aggcagtggaagggcattgacgacttcaaggctagaatcgcacccatcgcgtacatcggc
cacggcacctacaccaccttcgccatcaccaacctcacccgtatttacctggaggagtcg
gagcccaccagcatcaagttggcggttctgctcttcgacggcatctctcaccccaggaac
cccgacatatcttcagccgtggccgacgccaagaaccagggcgtccgcttcttcaccgtg
ggcatcacgcctgaagccaacctgcccgcaaatgtagctcagctgcggctaattgctagc
tcgccggcctcgcgctaccttcacaacctgcaggacggaggcgttgtggataaattcatt
aacgagattacggcgttggcggatgaagggtgtccaatggcccagagccagtgtaagtgt
gagaagggtgagcggggacccagcggcccccctggcaagaagggtcgtcctggagaagat
ggaagccccggctcaaaaggacagaagggtgaaggtgggctcagtggacttccgggtcgg
gaaggagctgagggaaagtcggggtacaaaggagagaagggagtgagaggggagtgtggc
acacctggaattaaaggagacagaggtcctgaaggaaccatcggcccgagaggaaaccgt
ggacttcagggttcgcttggtccacccggtgatattggacctgaaggtacaatgggtaaa
aaaggggaaaggggactttctgggccacctggaattcaaggggaaacggggattggcctt
ccggggcccaagggggacgccggttatcaggggcagaccggctctcccggccctccggga
cttggcgagcacggaccaccggggcctcaagggccacagggagtctcaggagagagagga
ctgacaggagaaggtttacctggaccaaagggggagcgaggcttggacgggccgcggggg
ctcagagggcagccgggcgccgggatcaaaggagacaagggggattttggggctccaggt
cttccagggcccctcgggctcccaggagccggcatacagggcgagaagggcgtcgaagga
ccaaggggcccgccagggggcagaggccagcgaggggagggcttccctggatccaagggg
gaccaaggtttgccgggcgaggtcggggccccaggagagagaggggccggagacgctgga
gctaagggcgagccgggatcaacggggctgtctggtttgccgggtctgccgggggaggac
ggggcccccggacagaagggcgagtcgggacctgtcggtttaagggggttagagggagca
gctggaatcggcacccagggcgaaaagggcgaccaaggccaaagaggaatacgcggcttg
gcgggtccagccggcatcgccggaccctccggaccaaagggagaaccggggacacaggga
agggggggtttacccggcccaccgggccgctttgtctccggacccaagggggatcttggc
ccgagtggccctccgggtccgttgggcgagactggctatggacttcctggtccaaagggg
gaccgtggagactcaggcccagcaggtccattcggtcccaaaggagacggctatccaggc
cccgtgggccctcctggtctgcctggacttccaggagaacccggccaggaaggactgggc
atccccggaccaaagggtgatgtcggtttccgagggttacctggtgcaccgggacctccg
ggcgaaggcctccaaggacctctgggtaaccctgggcgacctggcgctccagggccaaca
gggccacaaggacaaggagtccaaggaccaaagggcgaacagggggctcagggcgtgact
gggccgaggggggttcctggagaaggctttcctggagctaagggcgaccgcggctcgtcg
ggagagagggggctgaagggaatcaaaggagaatttggagattctggaagcgatgggaaa
cccggccaacctggggtcaaaggtgaagccggtctcactagagaggacatcatacggatg
atcaaagagatctgcgggtgtgggatcaagtgcaaggagaggcccatggagctggtgttt
gttattgacagctcggagagcgtgggcccggagaactacgagatcatcaaggactttgtc
aacgcgctggtggaccgaatcaccgtgggccgcaacgccacccgtatcggcctggtggtg
tacagcctggaggtgaagctggtgttcaacctggcccgctacgtcaccaaacaggacatc
aagcaggccatcaggaacatcccgtacatgggagagggcacccacaccggcacggccatc
cgcaaagccacccaggaggccttctacagctcgcgcgtgggggtcagcaaggtcgccatc
gtgatcaccgacgggcagacggacaagcgggagcccgtgaagctggatctggccgtgcgg
gaagcacacgccgccaacattgagatgttcgccctgggcatcgtgaacatctcggacccg
acgcaggcggagttcatgatggagctgaatctgatcgcctcccaccccgacgcagagcac
gtgtttctcatcgacgacttcaacaccctgccagcgctggagtccaagctggtcagccag
ttctgcgaggacgagaagggaaccgcgatatacaacggagtgattaacggctacaacggc
tacgggaacaacggcaactacgccggcggtggctacgagtaccggcccgggacggagcag
caggtactaagcagccgcccgtccgccaccaacaccgggtcgaccatccacaccgacgga
ggccgggtcgacaccaccctgcacgtcagcaagggatccagcacaggacacggaggcgga
gggcagagcgcgctcaccgacgcgcacgtgggaaacgagcgcggggacacattcaaccgc
aacacctcagtcaccaggaccggagaggactcctccagcacgcagggctcttcctcgtct
tcgtcctctaaaataatgacctcctcaggcgtgtccgtacaacaggagcctgcaccgcgg
ccggcactccccaaagagaccgtacccttggacccgcgctgcggcctggttctggaccag
ggcacgtgtcgggactataacatccgctggtactacgacaagcaggccaacgcctgcgca
cagttctggtacggcggctgcagcggcaaccggaaccgcttcgacacagagggagagtgc
aggaggacgtgtgtgctcgtctga
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