Gasterosteus aculeatus (three-spined stickleback): 120824142
Help
Entry
120824142 CDS
T07457
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120824142 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Calx-beta
Motif
Other DBs
NCBI-GeneID:
120824142
NCBI-ProteinID:
XP_040040685
LinkDB
All DBs
Position
VIII:complement(2061565..2096165)
Genome browser
AA seq
2153 aa
AA seq
DB search
MAALSASVQLLLLLAATASFCGGSLVAVNSGVEVARGRSVLVTERELKIATGPTVDCKVE
VVMNEPVTQRVGKLTPQVFDCSFLEGEVKYVHDGSPLLDEDTVMLRVYRFAASDTLVETV
VLSVRVVDSGSGVVELGSAPLVVPLFYGLSNAIDSSVLNIRSAADVACVVRLMTVDTSVP
ALGRLVTEEDSTQRKGRETAALCPGNKPCRHDTKEVSFLKISCQDFLSSGLKYQHLRPPS
PEIDYIPIRVELRLQGTRALMEAQSVWLPVLIHGAMQNQPPHAAFMASFILEVDQFILTP
LTTASLDAKDHETPQERLVFNVSAPPLEGYITHLTDHTKPVTSFTWLDLHEMKVAYQPPN
SSQSHRRNYEVEFQAIDSSYMTSPPIVVHISIRVTETNAPRVSWNMGLDLLEGQSRPITW
EELQIVDNDNIDAVYLVAVDGPLHGRLSVRGGKAFMFRVRDLREAAVVYHHSDSDSTRDH
VVFRISDGRHSVRHRFPINVLPKDDSPPFLINNVAVEVREGGAVRLEEYTLLASDLDSSD
DHILYRVGSGPRAGRLVRKTSPRETGDPVDRFLQRDLIQGQIYYQHSGEEMFEDSFDFTL
SDSHQPPNLSQTYTVVVHVFPVKDQLPAEVSDSVRSLTVKETEVVHITRAHLHFTDREHP
DTDLTYVITQPCFSPLHPGLMDAGRLFYTDSANSMKRDHMVPVLKSFTQHAVHHLKVAFM
PPVEDIGPEPLFVQFVFSVSDHHGGAVSGLLFNITVTPVDDQAPEAFTNPLRVEEGGGAF
VTEEHLLVQDRDSREEALRVEVRRMAGRGRLELQGRALQQGDGFSLQDLRGLRLRYLHDD
SETTEDEVHLKVTDGLNSVDVVLPVQVLPMNDEPPQLGGGLRGELSCEEAGRVQLTVDYL
SATDRDSDDSRLTYMLARSPGRGELQRAGQTVDKFSQQDLLQGHIYYVHTGGEIGPEPVL
ETITLIISDGEAGGTNGCCHGDAPPPPVPLHGTLPVYDLNITVLPVNNKVPSVTLGESML
VVNEGSSVCLCGGVLGASDPDSPADRLTFHLETPPLHGFLENTLPTPGSEKSNAGVRVES
FRLVHLTAGFINYVQSESKGVEPNVDQLSISVSDGLHHSAHVPFYIIINPTNDETPSLLL
ANFTVKEGGVRELTPSILDGFDLDAPPDILTFTVVQPPAHGSLINGIYGTEMNRYKEMGP
DLLQRSLPVTSFTLQELRQGMKIVYMHDDTETLKDAVSLRLTDGVHTVQGTARVTVLPVN
DEKPRLLKNAGLEVDAGERRVISSVALEAQDRDTPAKQVHYCLNAAPRFGRLQLKTEAGW
TELSAAQNFTQDDVEMNRLWYAHTGAAADAPGFKGHDSFRFTLSDLDNESPPQSFFISIH
TVRKGDLVLLSKAVRLMEGQRVVLNTDILLASDSAGRPRELVYAVSVPPRHGLVHAVQQP
GVPLTAFTQLDVAAHRVAYTHDNSHHAEADSFSFDVTNGDSSRSGTLHFTIERGDRIPPT
LHHNTGLRLQDGATETITSDHLQLTDPDTAPANLSYVITQLPRHGRLLLRGVLMSPPLTF
AQTDVDERNLAYRHDPGSPADIDRFYFLPADRNNRGYLEFGQLRKEPAVFNIQVDRVDRL
PPSLTTRRSPSTVVELASGRYGIFITSKHLQASDPDSPVEELEFSIARPPHFGYLENGLT
GAYIKGRFTQRDVDQRAVVFVLPADMEVTADSFLFRLTDPAGNTMLPEILELSWSQVELS
ATCYRTCETSGTLQIQIQRSGNSADPAYVAIQVEEGSAKPGSDFTHSTAGLIQFDPGVSV
KTWNIYLMDDGLEENHETFTVTLKKPQNAVLGQRTSASVEIIDPRGGRCDPDDLMVEDRT
QRPPLPPPPPPPPTYPPRPKEEDVIADIEAELLWENRPHPPRGDVPNRRHYPDYGEGDPQ
DQAAPGDHSHDRQLQGAGPGGTGDKVPHGGLKIHPAGERTTEEKVWTFHSLTPLSVEELQ
PSDAGGSWSPRSRPPQDLRVAEPPQMDPPEPGRQPEPRQRKTGKAISSSCADGWTHYRRR
CYIVGSSVASWASAHRSCSLLFNSSLTSVRSRRDMSWLWKFAGRKPFWIGPSGGPGRRMW
ADGRAPSFSRWGGSESGVGSDCVLVENPRSWISTGCSPEALHTFVCSSPAHTH
NT seq
6462 nt
NT seq
+upstream
nt +downstream
nt
atggctgccctcagcgcttcagtacagctgctgctcctgttggcggcaaccgcgtccttc
tgcggcgggagtctggtggcggtgaactcgggcgtggaggtcgctaggggtcggtcggtg
ctcgtcacggagagggagctgaagatcgccacgggccccacagtggactgtaaggtggag
gtggtgatgaacgagccggtcactcagagggtggggaagctgaccccgcaggtgttcgac
tgcagcttcttggagggcgaggtgaaatacgtccatgatggaagtcctctgctggacgag
gacacagtgatgctgagggtgtacaggtttgcggcctcggacacgctggtggagacggtg
gtcctgtcggtgagggtggtggactcggggtccggcgtggtggagctgggcagcgctccg
ctcgtggtccctctgttctacggtttatccaacgccatcgacagctccgtcttgaacatc
cgctcggcggcagacgtggcctgcgtcgtcaggctgatgaccgtcgacaccagcgtcccg
gctctgggtcggctggtcacggaggaagattccactcagaggaagggcagagagacggcg
gcgctctgtcctgggaacaaaccctgtcgtcacgacaccaaagaggttagtttcctcaaa
atcagctgccaggacttcctgagctccggtctgaaataccagcacctccgccctccgtca
ccggagatcgactacatccccatccgggtggagctgaggctgcagggcaccagggctctg
atggaggcacagtcggtgtggctgccggttctgatccacggtgcaatgcagaaccagccc
cctcatgccgccttcatggcctccttcatcttggaggtggaccagttcatcctcaccccg
ctcaccacggcctccctggatgccaaagaccacgagacgccgcaggagaggctggtcttc
aatgtgtccgccccgcccctcgagggctacatcacccacctgaccgaccacacaaagccc
gtcacgtccttcacatggctggacctccacgagatgaaggtggcctaccagccgcccaac
agcagccagtcgcaccgcaggaactatgaggtggagttccaggctatagatagttcctac
atgaccagcccacccattgtggtacacatctccatcagggtgacggaaacaaacgccccc
agagtctcctggaacatgggtttggatctgcttgagggtcagtctcgaccaatcacgtgg
gaggagctgcagatagtggacaacgacaacatcgatgcagtctatctggtggccgtggac
gggcctctccatggacgcctcagtgtcagaggcgggaaggcgttcatgttccgcgtgcgg
gacctgcgagaggccgcggtggtctaccaccactccgacagcgacagcacgcgcgaccac
gtcgtcttccgcatcagcgacggccgccacagcgtccgccacaggttccccatcaacgtg
ctgcccaaggacgactcgccgccgttcctcatcaacaacgtggcggtggaggtgcgcgag
ggtggcgccgtgcggctggaggagtacacgctgctggcctccgacctggactccagcgac
gaccacatcctctaccgggtgggttccgggccccgggccggtcggctggtgcggaagacc
tccccccgcgagacaggagatcccgtggaccgtttcctccagagagatctgatccagggt
cagatctactaccagcactcgggagaggagatgtttgaggacagctttgacttcacgctg
tctgacagccaccagccgcccaacctctcccagacatacacggtggtggtccacgttttc
ccggtgaaggaccagctgccagcggaggtctccgacagcgtgcgctctctgaccgtgaag
gagacggaggtggttcacatcactcgggctcacctccactttactgaccgagagcatcca
gacacggacctgacctacgtcatcacgcagccctgcttcagcccactgcaccctgggctc
atggatgcaggccgtctgttctacacagacagcgccaacagcatgaagagagaccacatg
gtgccggtgttaaagtccttcacacagcatgcagtgcaccacctgaaagtggccttcatg
cctccagtggaggacatcgggccggagccgctgtttgtgcagttcgtcttctccgtcagc
gaccaccacggaggagccgtctccggccttctcttcaacatcaccgtcactccggtggac
gaccaggcgccagaggcctttaccaacccgctgcgggtggaggagggcggaggggctttc
gtgacggaggagcacctgctggttcaggaccgggacagcagggaggaggccctgagggtg
gaggtccggaggatggcaggacgcggccggctggagctgcagggccgagcgctgcagcag
ggagatggcttctccctgcaggacctgagaggactccgactcaggtacctccatgacgac
tctgagaccacagaggatgaagtccatctgaaggtgacggatggtctgaactcagtagac
gtcgtcctcccggtacaggtcctgccaatgaacgatgaacctccccagctgggtggaggg
ctgcggggggagctgagctgcgaggaggccgggcgggtccagttgacggtggactacctg
tcagccacagaccgggacagcgacgactccaggctgacctacatgctggcccggagtcca
ggacggggggagctgcagagagccggacagaccgtggacaagttctcccagcaggacctg
ctgcagggacacatctactacgtgcacacaggaggagagatcggaccagagccggtactg
gaaaccatcaccctcatcatctctgacggcgaggccggagggacaaatggatgttgccat
ggagacgcccctccacctcccgtgcctctccatggcacgcttcctgtctacgacctgaac
atcaccgttctccctgtcaacaacaaagtaccctccgttactctgggtgagtccatgttg
gtggtgaacgagggctcctccgtctgtctgtgtgggggggtcctcggggcctcagaccct
gacagccctgccgaccggctgacctttcacctggagactcctccactgcatggcttcctg
gagaacacgctgccgacgcccggctctgagaagagcaacgcgggagttcgagttgaatcc
ttcaggcttgttcacctaactgcaggtttcattaactacgtccaatctgagagcaaaggg
gtagagccaaatgttgaccagctctccatcagtgtgagtgacgggctgcaccactccgcc
cacgtccccttctacatcatcatcaatccgaccaacgatgagacgccatccctgctgctc
gccaacttcacagtgaaggagggcggggtgagggagctgactccgtcaattctggacggt
tttgacctggacgcccccccggacatcctgactttcacggtggtgcagcctccggctcac
ggcagcctcatcaacggcatctacggcaccgagatgaaccgctacaaggagatggggccc
gacctcctgcagaggagcctccccgtcacctccttcaccctacaggagctccgacaaggc
atgaagatcgtgtacatgcacgatgacacggaaaccctgaaggacgccgtgtctctgcgg
ctgacagatggcgtccacacagtccaggggacggctcgggtcaccgtgctgccggtcaac
gacgagaagccacggctgctcaagaacgcggggctggaggtggacgctggcgagcggagg
gtgatttccagtgtggccctggaggcccaggaccgggacacccctgctaaacaggtgcac
tactgtctgaacgccgcgccacgcttcggcaggctgcagctcaagacggaggcgggctgg
accgagctgtcagccgcacaaaacttcactcaggacgacgtggagatgaaccgcctgtgg
tacgctcacactggagccgccgcggatgcccccgggttcaaaggtcacgacagcttccgc
ttcaccctcagtgacctggacaacgagagtcccccgcaaagtttcttcatctccatccac
actgtgcggaaaggtgacttagtgctgctgagcaaggcagtgcgtctgatggaggggcag
cgcgtcgtcctcaacaccgacatcctgctggcgtcggactcggccgggcgtccgcgggag
ctggtctacgccgtgtcggtgccgccgcggcacggcctcgtccacgctgtccagcagccg
ggcgtcccgctgaccgccttcacgcagctggacgtcgccgcccaccgggtggcttacacg
cacgacaacagccaccacgcagaggctgactccttcagttttgacgtcaccaacggcgac
tcgtcccgcagcgggacccttcacttcaccatcgaacggggcgaccgcatcccgccgacc
ctgcaccacaacacgggcctccggctgcaggacggggccacggagaccatcacctcggac
cacctgcagctcaccgaccccgacaccgcccccgccaacctgagctacgtcattacacag
ctgccacgccacggccgactgctgctgagaggagtcctgatgtccccgccgctgacgttc
gcccagaccgacgtggacgagcggaacctggcttaccgacacgacccgggcagcccggcg
gacattgacaggttctacttcctgccggccgacaggaacaacagagggtacctcgagttt
ggacagctgagaaaagagcccgctgtctttaacatacaggtggatcgcgtggacaggtta
ccccccagtctgaccaccaggcggagccccagcacggtggtggagcttgcgagtgggcgc
tacggcatcttcatcacttccaaacacctgcaggcctccgaccccgacagccccgtggag
gagctggagttctccatcgccaggccgccacacttcggctacctggagaacggcctcacg
ggagcttacatcaaaggtcgcttcacccagcgggacgtggaccagcgcgctgtggtgttc
gtcctcccggccgacatggaggtgacggccgacagcttcctgttccgcctcaccgacccg
gcgggaaacaccatgctgcccgaaatactggagctgtcgtggtcgcaggtggagctgtct
gcgacctgctacagaacctgcgagacctcggggactcttcagatccagatccaacgcagc
gggaatagcgccgacccggcatacgtcgccatccaggtggaggagggctcggccaaacct
ggcagcgacttcactcacagcacagccggtctcatccagttcgacccaggagtcagtgtg
aaaacttggaacatttacttgatggatgacggtctggaggaaaaccacgagaccttcact
gtcaccctgaaaaaaccccaaaacgccgtcctgggacagaggacctctgctagtgtggaa
atcatcgaccccagaggaggacggtgcgacccagacgacctgatggtcgaggatagaaca
caacgcccacctctccctcctcctcctcctcctccccccacgtaccctcccagaccgaag
gaggaggacgtcatcgccgacattgaggcagagctgctgtgggagaaccggcctcatcct
ccccgaggcgatgtcccgaaccgccggcactacccggactacggagagggggacccgcag
gaccaggcggcccccggcgaccacagccacgacaggcagctgcaaggggcgggccccggg
ggcaccggggacaaggtcccacatggaggactgaaaatccatccggccggagagaggacg
actgaggagaaggtctggacgtttcatagtctgactccactctcggtggaggagctgcag
ccgagtgacgccggggggagctggtcgcctcgcagtcgccccccgcaggacctccgggtc
gcagagcctcctcagatggatcctccggagccagggcgccaaccggagccccgccagcgc
aagacggggaaggcgatcagcagctcctgtgccgacggctggactcactacaggagacgc
tgctacatcgtgggctcgtcggtggccagctgggccagtgcccacaggagctgctctctg
ctgtttaacagcagcctgaccagcgtgcggtccagaagagacatgagctggctgtggaag
tttgcagggaggaagccattttggatcggtccgtccgggggtcccggtcgccggatgtgg
gctgacggtcgggccccgtccttctccaggtggggggggtctgagtccggagtcggctcg
gactgcgtgctggttgaaaacccccgaagctggatctccacaggctgctcccccgaagcg
ctacacacatttgtctgttcatcaccggctcacactcactga
DBGET
integrated database retrieval system
