Gasterosteus aculeatus (three-spined stickleback): 120825087
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Entry
120825087 CDS
T07457
Symbol
ccdc88aa
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gat03037
]
120825087 (ccdc88aa)
Cilium and associated proteins [BR:
gat03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120825087 (ccdc88aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
CH
Motif
Other DBs
NCBI-GeneID:
120825087
NCBI-ProteinID:
XP_040042395
LinkDB
All DBs
Position
IX:complement(6103007..6119441)
Genome browser
AA seq
1706 aa
AA seq
DB search
MEGAVLPPRLDEFMRSALVTWVRTFVPLDGDMNFDFSVLLDGVFLNDVMTQINPSATPAK
KVSRDPSQRTQNLNVLVQRIKTYYQDNLRQFIMIPLPNVLLLGRTPYCEQSPEEMNKLLM
LLLGCAVQCEEKEEYIERIQTLETKAAIAAHIHEVTHSQENVLDLQWLESSEVHPTDFEV
AARNLATHLQRVLDQRDTHLETIAQLMQEKEGVVSLLNSPSSPQSGSYSPSMQQQTGTQQ
HLSVELADSKAKIRRLRQELEEKSEQMLDCRHELENMEVELKRIQQENSQLLVDARAART
YRDELDALRERAMKADKLESEVGRYREQPKMEVCKAKVEELKEDNRVLQETKEVLEDQLA
GWRASSDRIHHLEKHSLLLETRVHDMEQEREAERKRTEELQDENLALSLAQRRLMEESQH
LGWELDQLTKTTESSQGHQTLSDEVSERTCSRMLKLEKENQSLSKTIEELRAASINNNTR
TKHGHRLERDVFQETCSIGNLNLGEPTYCHQLFPAEDLEQVQSEILLTENPDLLAREKGQ
LEDVDQGDHSKEGMSDLKVLENNHNRRHCFVGSRDHSPGSKDCSPCHDSIFKGLPTHSSY
ARKHTQLEAKCRALDLERTIQRLEAEVQELEAENQIPQANFEEIRISARRLEQLETDKQS
LEQETTTFEREKRHLEKENRGLRQQAEIQEANLDSSNVSMAGLEREMPFLVKEVEGTAER
VKGLERDNRELTKQAAIDQRTLATLREELVIEKLKTQQRELLSMVHDFEMRVLNQESVQQ
AEEEAPDNRRFKMQESELESSLKKSLRIKDDKMAALEPRLLESSTLSLELKTVRLSYEAL
QQRLEEEWTASSSTPPRETGKAMGEWLRESQEATKELLKLKDHLIEVERNNATLEAERQA
MQAQLRQLENQSDSQQAQVLALQRQAATLQENNTALQTLNANLQVEKYTLNSQSASLMAQ
NAQLQQQQSGTESERDNATRELEELRAVQEQLLRDHKLLAELHEWQTMDYEALIDKHGCL
KKAHFALTLEYRTMQDSYNSLLQQRTKLEDLEKVLKEEQMRMALEKEQNRTTAAECCRLR
DEKDRLNLTYRQLVNDKESLTADHKELKSQLNEAKLEHTWLEADFSKLKKEFQQLNITST
KLTNQCELLSQLKGNLEEKSCLLLGQIETLMLQNRTLLEQTMESKDLFHVEERQYIDKLN
DLRRQKERLEEKIMDQYKFYEPSPPRRRGNWFALKMKKLIKSNSHEHGPDRPPTPTHSGV
AELHLSNSSIGADGSGASGATSAGDAVSPQRNSTTKMFPRMRNRLKDRKKVKSLFQRSMY
KDANDGAVPSGSEDNGELQNHGMNGVESRAQSESSGEFTVSLENEPWSNGSSPVQQPPSR
CSSSSFQSPSDTSTPQHTRKQHKEEETATMPFTNSPRSVIQSLPKQKNPVISEDFWLTKG
TKSIQRGSRGKVTRRSSDSAGAVKTNPGLNGITSNSSSNKAETTRALACSPITVLYVQGK
SSSMSGCLNCFSTPLGKEWRGKGSRLPKSLPRASGVISTAEGSSRRCSVNSDCRVTVKTD
PLSIQVSDNGSKRVEAPSQPEPEANNSEPDPMPPVKPPRDPTVVPTDNPKSPGKESLLGS
SFTFQSVFSNTIFSESVVTTMTGLETLENNQISPCPNPSLVQNGPLESQESSPNEPQTLL
GVVDEQSQNAEHAPAQEEHDEPLTSA
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagccgttttgccgccccgtctggacgaattcatgcggagcgcactcgtcact
tgggtgaggacattcgtgccactagatggggacatgaactttgacttctctgtactactg
gacggagtctttttgaatgatgtcatgacacaaataaatccctcagctacacctgcaaag
aaagtgagcagggatccgagtcagaggacgcagaacctgaacgttctcgtccagcgaatc
aaaacatattaccaggataacctgagacaatttatcatgattcctttgccaaacgtgttg
ctgcttggcaggactccttactgtgaacaaagtccggaggaaatgaataagcttttaatg
cttctgttgggatgtgcagttcagtgtgaggaaaaagaggaatacattgagaggatccag
acacttgaaacaaaagctgccatagctgcacacattcatgaggtgacccacagtcaggag
aacgtgctggatctgcagtggttggagtccagcgaggttcacccgactgactttgaggtc
gcagcgaggaacctggccacgcacctgcaacgtgtgctggaccagagggacacccatctg
gagactatagcgcagctcatgcaggaaaaggaaggtgtggttagtctgctcaacagcccc
tccagcccgcagtctggcagctactcccccagcatgcagcagcagacaggtactcaacaa
cacctgtctgtggagctggccgactctaaggccaagatcagacgacttcgacaagaacta
gaggagaagagtgagcagatgctggactgcagacatgagctggagaacatggaggtggag
ctgaagaggatccagcaggagaactcccaactgctggtagacgcccgcgcagcgcgcacg
taccgggacgagctggacgccctcagagagagagccatgaaggcagacaagctggagagc
gaagtgggacgctacagagaacaacccaagatggaggtctgcaaagccaaagtggaggag
ttaaaggaggataacagagtgctacaggagaccaaggaggtgctggaggatcagttggca
ggctggagagcaagctccgatagaatacaccatctggagaagcacagtctgctgctggaa
accagggtccatgacatggagcaggagagggaggcggagcgaaagcgcactgaggagctg
caggacgagaacctggctctgtctttggctcaaaggaggttaatggaggagtcccagcac
ctgggctgggagttagaccagcttaccaagaccactgagagctctcagggccaccagact
ctgagcgacgaggtgagtgagaggacctgcagtcgcatgctgaagctggagaaggagaac
caaagtctctcaaagaccatagaggaactgagagctgcctccattaacaataacacacgg
acgaaacatggccaccgccttgagcgtgatgtcttccaggagacctgtagcatcggcaac
cttaacttaggggaacccacatactgtcatcagctattccctgcagaagatctggagcaa
gtccagagtgaaatcctcctcacagaaaatccagaccttcttgcgcgggagaaaggacag
ctagaggacgtggaccaaggagaccattcaaaagaagggatgtctgatctgaaggtctta
gaaaacaatcacaataggcgccattgttttgttgggtcgcgtgatcactccccgggctca
aaggactgcagtccctgccatgacagcatcttcaaaggtctgccaacacattcctcctat
gccagaaagcacacacaactggaggccaagtgcagggccttggaccttgagaggacaatt
cagcgtctagaggcagaggttcaggagctggaggcagagaaccagattccgcaggccaat
tttgaagaaattcggatctccgcgcggcgcctggagcaactggaaacagataagcaaagt
ctggagcaggaaaccacaaccttcgagcgggaaaagaggcatctagagaaagagaatcgg
ggtctccgccagcaggctgagatccaggaagccaatttagacagcagcaatgtgagcatg
gccggcctggaaagggagatgccttttctagtgaaggaggtggaggggactgctgagagg
gtcaaaggcctggagagagacaaccgagaactgaccaagcaagccgctatcgaccagagg
accctggccaccctccgggaggagctggtcatcgagaagctgaagacccagcagagagaa
ctgctgtcgatggtccatgattttgaaatgagggtcctcaaccaggagagtgtgcagcag
gctgaagaggaggccccagacaacaggaggttcaagatgcaggagtcagaattagagtcg
tctctgaaaaaatctcttcggattaaagatgacaagatggcagcgttagagccgcgtctg
ctggaatcctccaccctgagcctagagctcaagactgtgaggctgagctatgaggccttg
cagcagaggctggaggaagagtggacggcgtcgagttccaccccgccccgagagactggc
aaggcaatgggcgaatggcttcgtgaaagccaggaggccaccaaggaactgctgaagctc
aaagaccatctcattgaagtggagaggaataatgccacacttgaggcagagcgccaggca
atgcaggcccagctgaggcagctggaaaatcagtccgacagtcagcaggctcaggtcctc
gccctgcagaggcaggccgccacactgcaggagaacaacacagccctgcagacactcaac
gcaaacctgcaggtggagaaatacacactgaactcacagagtgcttccctcatggcccag
aatgctcagctgcagcagcagcagtcaggaacagaaagcgagcgggacaatgccacgcgg
gaacttgaggagctgcgcgctgttcaggagcagctgttaagagatcacaagctgctggcg
gagctgcatgaatggcagaccatggattacgaggccctgatagacaagcatggctgtttg
aaaaaagcccatttcgcgctgacgctggagtatcgtaccatgcaggacagctacaatagc
ctgttgcagcaacggaccaagctagaagatctggagaaagttctgaaggaggagcagatg
aggatggctttggagaaagagcagaataggaccaccgctgctgagtgctgcaggctccgc
gatgagaaggaccggctgaacctcacgtaccgtcagcttgttaacgacaaggagtcactg
acggccgatcataaagagctgaagagccagctgaacgaggccaagctggagcacacctgg
ttggaggcggacttttccaaactcaagaaggagtttcagcagctgaacatcacctccacg
aagctcaccaaccagtgtgagctgctgagccagttgaagggcaacctggaggaaaagagt
tgcctcctgctcggccagatcgagaccctcatgctacagaaccgaaccctgctggagcag
actatggagagcaaggatctgtttcacgttgaagagcgacagtatattgacaagcttaat
gatttgaggagacagaaggagaggctggaagaaaagataatggaccagtacaagttttat
gagccatcgcctccacgtcgacgtggaaactggtttgctttaaaaatgaagaagttgatt
aagtcgaatagccatgagcatggacccgaccgcccaccgacccccacgcactcaggcgtc
gctgagctgcacctctccaactcctccatcggcgctgacggctctggagcctcgggcgcc
acctcagcaggtgatgccgtctcaccccaacgtaacagcaccaccaaaatgtttccccgt
atgaggaacaggctgaaggacagaaaaaaagtcaagtccctcttccagcgttctatgtac
aaggatgcaaatgatggcgctgtgccatctggatctgaggacaacggcgagctgcaaaat
cacgggatgaatggcgtggagagtcgagcccagagcgagagcagtggtgagttcactgtg
agcctggagaatgagccgtggtcgaatggcagcagccctgtccagcagcccccgtcacgt
tgctcctcctcctccttccagtcccccagcgacacctccaccccccaacacacacggaag
cagcacaaggaagaggaaactgctaccatgcccttcaccaacagcccacgttcagttatc
cagtccttaccaaaacagaaaaatcctgtgatttctgaggacttctggctcacaaagggt
acaaagagcatccaaagggggtcaagagggaaagtgacacgtcggtcctcagattcagct
ggcgccgtcaaaacaaacccagggctcaatgggataacttcaaactcgtcctctaacaaa
gctgaaacaacccgggccttagcttgttcacctatcacagtgctgtatgttcagggcaaa
tcttcctcaatgtctggctgcctcaactgcttctccacccctctcgggaaagagtggcga
gggaaggggtcaaggttgccgaaaagtctcccccgagccagcggtgtcatttccaccgcg
gaaggatcgtcccgacgctgcagtgtaaatagtgactgcagggtgaccgtcaagactgac
ccgctctccattcaggtgtcagataacggcagtaaacgggtggaagccccgagtcaacct
gaacctgaggcgaataacagtgagcctgacccaatgcctcctgtcaaacctcccagagac
ccaacagttgttcccacagacaaccccaaatctcccgggaaggagtcccttcttggctct
tctttcactttccaatcggtcttctccaacaccattttcagtgaatctgtggtcacgacc
atgaccggtttggagacccttgaaaacaaccagatatctccctgtccgaatccatctctg
gtccaaaatggtcccctggagagccaggagtcgtctcctaacgaaccacaaacgttgctc
ggcgtggttgatgagcagagtcaaaatgcagaacacgcacctgcgcaggaggagcatgac
gagcccctcacgagtgcatga
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integrated database retrieval system
