Gasterosteus aculeatus (three-spined stickleback): 120825093
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Entry
120825093 CDS
T07457
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120825093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120825093
03009 Ribosome biogenesis [BR:
gat03009
]
120825093
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120825093
Spliceosome [BR:
gat03041
]
Complex A
U1 snRNP components
U1 related factors
120825093
Complex B
120825093
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
Pre-60S particles
Helicases
120825093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
120825093
NCBI-ProteinID:
XP_040042417
UniProt:
A0AAQ4RKM7
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All DBs
Position
IX:complement(6052728..6059978)
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AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGGGNRSGPPPGKFGNPGEKLRKKHWNLDELPK
FQKNFYQEHPDATRRPLQEVELYRRTKEVTVKGRDLPKPIIKFHEAAFPSYVMEVIVKQN
WTDPTPIQSQGWPCALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
CGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDF
LKDYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRR
CDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFV
INYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQ
MADDRGGRGRGGRGGYKDDRRDRYSGGGRSSFGGSSYRDSDRGFGNGPKSAFGGNKAQNG
GSYGGNGGNSSGSYDDNNYSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAGQNGMNH
PPFSFNSQPPPPQAQQPPPPPPMVPYSMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcccggattttcagaccgagatcgcggcagagatagagggtatggtggaggacctcct
cgttttggtggtggtggtggaggaggtggaggtaacaggagcggacctcctccaggaaag
tttggcaaccctggtgagaagctgcggaagaagcactggaaccttgatgagcttccaaag
tttcaaaagaacttctaccaggagcatccggatgcaactcgcagaccccttcaagaggtt
gaactgtaccgaagaaccaaagaagttacggtcaaaggcagagatctccccaaaccaatt
ataaaattccacgaagctgcatttccaagctacgtcatggaagtcattgtcaaacaaaac
tggaccgatccaactccaattcagtctcaggggtggccatgtgccctgagtggcaaagac
atggttggcatcgctcaaactggttctgggaaaacccttgcatatcttctacctgcaatt
gtgcacatccaacatcagccattcttggagcacggagatggacccatttgcttggtgttg
gcgccgacccgtgaactggctcagcaggtgcagcaagtggctgctgaatacggcagggca
tcccgtctcaagagcacctgcatctacggcggtgcccccaaaggaccccaaatcagggac
ctcgagagaggtgttgagatctgcattgctaccccgggtcgtctcattgactttcttgag
tgtggaaagactaatttgcgtcgctgcacctatctggtgctggatgaagcagaccgcatg
ttggatatgggatttgaaccgcagatccgtaagatagtggaacaaattcggccggaccgt
cagaccctgatgtggagcgccacctggcctaaggaagtccgccagctggctgaggacttc
ctgaaggactacgtccagatcaacattggcgcactgcagctcagtgccaaccacaacatc
ctacagatagtcgatgtttgcaatgatatggagaaggaagacaaactgatccgtttgctg
gaggagataatgagtgagaaggagaataagaccattatttttgttgagaccaaaaggcgc
tgtgatgagatcacaaggaggatgagaagagatgggtggccagcgatgggaattcatgga
gacaagagccagcaggagagggactgggtcctaaacgagttccgatatggcaaagctcca
atcctcatcgctacagatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtc
atcaattatgactaccctaactcctccgaggattatatccatcgcattggacgcacagcc
cgaagtcaaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagcc
agtgacctgatctctgtgctccgcgaggccaatcaggccattaatcccaaactgatccaa
atggcagatgacagaggaggtcgcggaaggggtggaagaggcggctacaaggatgaccgt
cgggataggtattctgggggtgggagaagcagctttggcggtagtagctacagggacagc
gacagagggtttggcaatgggccgaagagtgccttcggtggcaataaggctcaaaatggt
ggcagctatggaggtaatggtggtaattcaagtggtagctatgacgacaacaattacagc
aacggccaggggaattttggtgctccggcaaatcaggtgggtgcctttggtaaccagagc
ttccagggcccccctcaatttggggcgatgcagagggccggtcagaatggcatgaaccac
ccaccattctcattcaactctcagccaccaccaccacaggctcaacagccaccacctcca
ccaccaatggtgccctactccatgccaccacccttcccacagtag
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