KEGG   Gasterosteus aculeatus (three-spined stickleback): 120825229
Entry
120825229         CDS       T07457                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
gat  Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:gat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gat03041]
    120825229
Spliceosome [BR:gat03041]
 Complex B
  Other components
   Complex B specific factors
    120825229
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th LisH_TPL Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_2nd Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Nucleoporin_N TFIIIC_delta WD40_RFWD3 WD_LRWD1 Beta-prop_IFT122_2nd VPS8_N LisH
Other DBs
NCBI-GeneID: 120825229
NCBI-ProteinID: XP_040042666
UniProt: G3Q173
LinkDB
Position
IX:complement(13430932..13436862)
AA seq 525 aa
MATEMEPSDVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIDSFVADIKSGHWDSVL
LAIKSLKLPDNTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQTQPERYIHLDKM
LTRSYFDPCEAYPKGSSKEDRRRAIAEALVREVSVVPPSRLMALLDQVGVRDQHQSTCTQ
SQNSMRIQQHADQLPADMTIETSGNQDRGTEKESFPTQLYRHIKFGRRSHVECACFSPDG
RYLVTGSVDGFIEVWNFKTGKISKDLKYQAHDSFMMMDDAVLCMCFSKDTDLLATGAQNG
KIKVWRVQSGSCLRRFEHAHNKGVTCVSFSKDNNHILSASFNQTIRIHELRSGKTLKEMK
SHSAFEKDAFFTQDGFHIISASSDGTVKIWNTTSCECLRTFKSVSRTSDDPVNNVIPLPQ
NPEHFVICNHSDTVVIMNMDGQIVRTFSSDRKQRADFVCCTVSPRGDWIYCVGEDFVLYC
FHYTTGRLQKTLTVHEKDVIGVAHHPRENLIATYSEDGLLRLWKP
NT seq 1578 nt   +upstreamnt  +downstreamnt
atggcaacggagatggagccctcggatgtgatccgcctcataatgcagtacctcaaggag
aacaacctctaccgaacactcaccaccttacaggaggagacaaccgtctcgctcaacaca
gtggaaagcatcgacagcttcgtcgcagatataaagagcggccattgggactcagtcctg
ctcgctatcaagtccctcaagttgcccgacaacacactgatcgacctttacgagcaggtt
gtaatggagctcatcgaaatgagggaggtgggagccgctcgctctctcctcagacagacc
gaccccatgatcatgttgaagcaaacgcagcccgagaggtacatccatctggataagatg
ctaactcgctcctactttgacccctgtgaggcgtacccgaaaggcagcagcaaggaggac
cggcggcgggcaatcgccgaggccttggtgagggaggtcagcgtggtgccaccttctcgc
ctcatggcgctcctggatcaagttggcgtaagggatcaacatcaatccacttgtactcaa
tctcaaaattctatgagaatacaacagcatgcagatcagctccccgccgacatgaccata
gaaacatctggcaaccaagacagaggaacggagaaggagagctttcccacgcaactgtac
cgccacatcaagtttgggcggcgatcacatgtggagtgtgcttgtttctctcccgatgga
agatacttagtcaccggatcggtggacgggttcatcgaagtctggaactttaagaccgga
aaaatcagtaaggacttaaagtaccaggcccatgacagcttcatgatgatggatgatgcg
gtgctgtgtatgtgcttcagtaaggatacagatctattggcaacaggagctcagaatggc
aaaataaaggtctggcgggtgcagagcggctcgtgcctgcgcaggttcgagcacgctcac
aacaaaggcgtgacctgcgtgagcttctccaaggacaacaaccacatcctcagcgcctct
tttaaccagactatcagaattcacgaactgagatcaggaaagacactaaaggagatgaag
agccattcggcgtttgaaaaagatgcatttttcactcaagatggatttcacatcatcagt
gcctcatcggatggcacagttaagatttggaatacaacatcatgcgagtgcctccgcacg
ttcaaatccgtctcccggacctcagacgaccccgtcaacaatgtgattcctctcccccaa
aacccggagcactttgtgatttgcaatcactccgacacggtggtcatcatgaacatggac
ggtcagatcgtgaggaccttcagctcggacagaaagcagagggccgatttcgtgtgctgc
accgtgtcgccccgcggggactggatctattgtgtgggagaggactttgttctgtactgc
ttccactacacgacgggaaggctgcagaaaacgctgaccgtccacgagaaagacgttatt
ggcgtcgctcaccacccacgcgagaacctgatcgccacgtacagcgaggacggcctcctg
aggctgtggaagccttga

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