Gasterosteus aculeatus (three-spined stickleback): 120825457
Help
Entry
120825457 CDS
T07457
Symbol
palb2
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K10897
partner and localizer of BRCA2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03440
Homologous recombination
gat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120825457 (palb2)
03460 Fanconi anemia pathway
120825457 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120825457 (palb2)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
120825457 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
120825457 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
120825457
NCBI-ProteinID:
XP_040043001
LinkDB
All DBs
Position
IX:17817620..17823978
Genome browser
AA seq
1240 aa
AA seq
DB search
MDTPAVPLSREHHGGQSGDAMRREEQLRTTLHYDDKEKLRRKLALLQREYLRTAERLQRA
ERLDAVRRHVRSRIGRQDQDQDQRDPEETPGPRLKPSPWVPNATNGTAPRAAPCPGHAGA
VSDASRKSPVIRFLLPSAAVGPQTPDPRHDAVNGHRPSPALRLRSRRSRLRWERRSAEAG
GSADDHSEEPRERCGRMETDGAEGCEGGVRAEAANESEEPLSCDDSESPSLLLPQWNAPG
AGGAGGNEGEETRERLTETDAELPRWTGTGARRETEEGGKSKEDRDGRLFEGGSERDAEQ
MAAELREREKGGENAAGIREEESELTGGERDGKGASPRDSCTLREGLLYPAEYYVRTTRR
MTLSQSQPDTQAILFSQLSAGRHRAGRGLXGPTRSDRRTAACSSSPTSGELNGHSSRETA
DPIPGCEIDGDARVPPPIAAAARPARGGRKRRGRGRGGGRTRTPRRPLIGEPNQQPGLGT
TSDNPRAPAPPPHGGEGPGQAAAARDEPEAASACRAATPPSPGETQPGSASGHAKKVFPI
FLRSEANGSRQTSAACWRSLPLPSSPPASTALLPVLPRPPQFPAPVFNNLLNFDFPQDFH
LPDEQFASLKLLKLRQVAADPVVARLTPRCTAGDPAAELPRSLTPTLPSSPRPATSSPIE
EELVEETEETPQGDAVEERVGDHEEGAAGSPDRRVETAERESASSVVPSEGRTDAALEDP
TPTDHRAARPQRPPEEPSDSADAVRLCNHGEAEGGSPRGKSPAADSKEPSDPPASPPSDP
RRSVPSQLLLSPPGPSMTPRPPSHPAVLCSPTLPSLGLSPHPLGGAVPVTSSPSAPSLTS
SPAALVLSPSPPVPPGRPAASPAASPAAPIEAPSSPLCPVEPTDRTTAPGVQSQRSGGGA
EEHVMRSTHTLKAPAGRCLVDACCLRGSSGALCVAAAAEWTVCLWSQTSAADWGLTHTWA
FSKPVISVFPVPDAAGLMCVTLGPLEITEVRVLSCSRLSQAPLCEGVVQAVVGAPESRVV
VSSHSPSGSTLRVFAASDGGRWSSQPLASPGVCVGSLAPVDGLSDALIGSDDGGRLFVWN
LKTGQLLRRIALGDGLSHASCLRGFSSRGALFVLLQHQQLGSPEDGAKKEEDEDERQSAA
LLSLVAVNPLSGRSALASRLRPPEGWSGRLCEADVGGGGGGVVGLSRSGCVCVWELGGRG
APRMVGAPGSDGWQLARWGDGGTLVTGHHNGDVTLHGRAG
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggacacaccggcggtaccgctgtcgcgtgagcaccatgggggacaaagcggagatgcg
atgcgccgcgaggagcagcttaggaccacgttgcactatgatgacaaggagaagctgcgc
aggaagttggccctgttgcagagggagtacctcaggacagctgagagactgcagcgggcc
gagcgtctggacgcagtgcggagacatgtgaggagcaggatcggtcggcaggaccaggac
caggaccagagagacccggaggagacaccgggtccccgtctcaagccatcaccatgggta
ccgaacgccaccaatgggacagcaccacgcgccgctccgtgcccgggacacgcgggagca
gtttccgatgcctccaggaagagcccggtgatccgctttctgctcccctccgctgccgtc
ggcccgcagacaccggacccccggcacgacgccgtcaacggtcacaggccgagtcccgcc
ctgcgcctccggtctcgacgcagccgcctgcgctgggaaaggaggagcgccgaggccggc
gggagcgccgacgaccacagcgaggaaccccgggagcgatgtggcaggatggagactgat
ggggcggaagggtgcgagggcggagtcagagcggaggccgcgaacgagagcgaggagccg
ctgtcctgcgacgactccgagtctccgtccctgctgcttccgcagtggaacgctcccggg
gcaggaggagcgggaggtaacgagggggaagagacgcgagaacgactaacggagacagac
gccgagctcccgcgttggaccggaacgggagccagaagggagacggaggaaggagggaag
agtaaagaggaccgggacggaaggctgtttgaaggcggcagcgaaagagacgccgaacaa
atggcagcagagcttagagaaagagaaaagggtggcgagaacgcggctgggatcagagaa
gaggagagcgagctgactggaggagagcgtgacgggaagggcgccagtccccgggactct
tgtaccttacgagaaggactactttacccggcggagtactacgtccggaccacgagacgg
atgaccctttcgcagagccagccggacacgcaggccatcctattctcccagctgagcgcc
ggacgccatcgggcgggccgcggcttgnnaggcccgacgcgctcggaccgccgcaccgcc
gcatgttcgtcctcgccgacgtccggcgagctcaacggccacagctccagagagacggcc
gacccaatcccggggtgtgaaatcgacggcgacgctcgcgtcccccccccgatcgccgcc
gccgcccgtccggcgagaggcgggaggaagagaagaggtagaggccggggcggagggagg
acgcggaccccgcggcgcccacttattggagaaccaaatcaacaaccgggcctcggaacg
acctcagacaacccccgggcccccgccccgcccccacatggaggcgagggaccgggacaa
gccgcggcggcgcgggacgagccggaggctgcgtcggcctgcagggcggccacgcctcct
tcccctggagaaacccagccaggctccgcctctggacacgcgaagaaggtcttccccatc
ttcctgaggagcgaggcgaacggatccagacagacgagcgccgcatgctggcgatctctc
ccccttccctcctcgccgcctgcttcgacggccctgcttcctgtgcttccccggccccct
cagttcccggcccccgtcttcaacaacctgctgaactttgacttcccgcaagatttccat
ctccccgacgagcagtttgcctccttgaagctgctgaagctccgccaagtcgccgcggat
ccagtggttgcgcgcctcacgccgcggtgcaccgccggcgacccggcggcagagctcccg
cgcagcctcacgcccacactcccaagttccccgcgtcccgcaacgagctcaccaatagag
gaggagctcgtcgaggagaccgaggagacgcctcagggagacgccgttgaggagcgggtt
ggagaccacgaggaaggagctgctgggagcccggaccgccgcgtcgagacggcggagcgg
gaaagcgcgtcgtccgtcgtcccgtcagaagggcgaacggacgccgctttggaggatccg
acgcctacggaccaccgggctgcaagaccgcagagaccccccgaggagccctccgacagc
gccgacgccgtgcggttatgtaaccacggcgaagctgagggggggagcccgcgtgggaaa
tcccccgctgcagattcaaaggaaccctccgacccccccgcgagtcctccgagcgacccg
cgccgcagcgtcccgtctcagctgctgctgagtcctcccggcccctcgatgaccccgcgt
ccgccctcccaccccgccgtcctgtgcagccccaccctgccgtcgctcggcctcagcccc
caccccctcggcggcgccgtccctgtgacctcctccccctccgccccgtcgctcactagc
agtccggccgcgctggtcctctccccttctccgccggtcccccccggccggccggccgcc
tcccccgccgcctcccccgccgctccgatcgaggccccgtccagtccgctttgtccagtc
gaacctactgaccggacgacggctccgggggtccagtcccagagatcaggggggggggcg
gaggaacacgtgatgagaagcacacacacactgaaggccccggcaggacgctgtctggtg
gacgcgtgctgcttgcgtggatcgtcgggcgctttgtgcgtggcagcagccgcagagtgg
accgtgtgtctctggagtcagacgtcagcggccgattggggattaacacacacttgggcc
ttcagtaagccggtcatcagtgtgttccccgtcccggatgctgccgggctgatgtgtgtg
actctcggtccgttggaaatcaccgaagtgagggtgctgtcctgctcccgcctctcccag
gcgccgctctgcgagggcgtcgttcaggccgtcgtgggcgcgcccgagtccagggtggtc
gtctcctcccactcgccgtccggctccacgctgcgggtgttcgcggcgtccgacggcggc
aggtggagctctcagcctctggcgtccccgggtgtttgtgtcgggtctctcgctccagtg
gacggactttcagatgctctgattggctcagacgatggcgggcgcctcttcgtctggaat
ttaaagaccgggcagctgctgcggagaatcgccctcggagacggtttgtcccacgcgtcc
tgcctcagaggattctcctcccgtggggcgctgttcgtcctgctgcagcaccagcagctc
ggctccccggaggacggcgccaaaaaggaggaggacgaggacgagaggcagagcgccgcc
ctcttgtcgctggtcgccgtcaaccctctgagcgggaggtccgcgctggcttcccgcctg
cgtccccccgaaggctggagcggcaggctgtgcgaagccgacgtcggcggcggcggcggc
ggcgtggtcggcctgagtcggagcggctgcgtgtgcgtgtgggagctggggggccggggg
gccccgcggatggtgggggctcccgggagcgacggctggcagctggctcgatggggggac
ggcggcacgctggtgaccggtcaccacaacggagacgtgaccttgcacggccgggccggg
tga
DBGET
integrated database retrieval system
