Gasterosteus aculeatus (three-spined stickleback): 120825495
Help
Entry
120825495 CDS
T07457
Symbol
pcdh7a
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-7
KO
K16498
protocadherin delta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120825495 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gat01009
]
120825495 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120825495 (pcdh7a)
Protein phosphatases and associated proteins [BR:
gat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120825495 (pcdh7a)
Cell adhesion molecules [BR:
gat04515
]
Cadherins
Protocadherins
120825495 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
120825495
NCBI-ProteinID:
XP_040043065
LinkDB
All DBs
Position
IX:1207414..1240084
Genome browser
AA seq
1371 aa
AA seq
DB search
MQGLGAVHSSAAARALSLVVLALQMLTQLPGADSALRYRVAEEGPPDVKIGNVAVDLGLT
AGTGSGDVTFALESGSEFFKIDNVTGELTTGPRRIDREKLQQCQMIFDENECFLDFEVSV
IGPLQSWVDLFEGRVVITDINDNTPSFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNG
IDRYELIQDGATGSGSTRRVAPGNPVARVEGLVDRRGRSGDSGGGPRSTVFELQVADIPD
GEKQPQLIVKGTLDREQKDSYELVLRVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTY
EAEMAENAPPGTPVLQVRASDRDIGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRI
DREDVAQLRFTVSARDRGQPPRTDRATVILAVRDENDNVPVVEIRKIGRIPVRDGAALVP
ENVLVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETALPPLPADEAFDRNKKK
YFLHTSALLDYEATKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHAPAFPQSVVEVHF
AENNSPGERVVTVVASDADSGKNAEIAYSLDPAGNGPFYIDADNGDIRATGVLDRELRER
YELRVIAKDKGTPPLQGSTTVVVQVTDRNDNAPKFVQEIFTFYVKENLLANRPVGMVTVT
DADEGENAELSLFVEMDEKKAGEKADGEDGEKKKEEVFSIENNTGTIFSSASFDREKLST
YTFRVRAVDGGEPRKTSTATVSLFVTDENDNAPSVTSPANESYTLLPPASSARTIVRTVT
AVDSDTGPNADLRYALVGGNPFQLFEIGHANGVITLAETLERRHRGLHRLVIRVNDSGAP
SLCATALVHVFINESLANATLVDAQVARSLMAPLSLDIAGDPDSERALGKQRLSVAIGVL
AGAAAVILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPPGAQPQAARGRGSDRGRKP
RRDKRNGSGAGAAAGGGKADRSLYSGIVTVNGLRRHGNDDDEEDLSSASERLAARYCAMD
GDPGSPRMGGGRRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQDLPPSNTFV
GSGGCAGSAGSSSSSSGGSGNADAMSLGSDQCSEYGCQTGNKYSKQGTLRRVTFSVVSQP
QDAGCYDSGLEDSETPSSKSSSGPPRLGALPLPEEGYERTTPEGSVGEEEHVENDARQLP
DVALTGKCTRECDEFGHSDTCWMPVRPSPRQRHGSDPPRLSTFAPGDDNNNLRGNDHESD
SESAGSAGSSEPGVVGGEEGQRLPLANGGPLGSLGDGDRNRNMGDHNRNLLNRKMTSASY
DTFSSAGFGRRQPEEEGGEGRNPAEVIPLTRTGGDYKTTSCLTLSRREVYL
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgcaggggcttggcgcagtgcactcttccgccgccgcgcgggctctcagcctcgtggtc
ctagcgctgcagatgctgactcagctgccgggcgcggactcagccctccgctaccgggtg
gcggaggagggcccgcccgacgtcaagatcggcaacgtggccgtcgaccttggcctcacc
gctggcacgggcagcggggatgtcaccttcgccctggagagtggctccgagttctttaag
attgacaacgtgacgggagagctgacgacaggcccgcggcgcatcgaccgggagaaactc
cagcagtgccagatgatatttgacgagaacgagtgcttcttggacttcgaggtgtcagtg
attggcccgctgcagagctgggtggacctgttcgagggccgcgtggtcatcactgacatc
aacgacaacacaccttccttcccctcacctgtgctccagctctcggtggaggagaatcgc
cccatcggaaccctttacctgctgcccacagcaacggacagggattttggacggaacggc
atcgaccgctacgagctgattcaagacggtgcgaccgggtcaggttccacgagacgagtg
gccccagggaaccccgtcgctagagtggagggcctcgtggaccgcaggggtagaagcggc
gacagcggaggaggacccagaagcaccgtgttcgaactgcaagttgcagatataccagat
ggcgagaaacaaccgcagctcattgtgaaaggcacattggatcgcgagcaaaaggactcc
tacgagctggttctcagggtgcgagatggagggaacccgccgcgttcctcgcaggccctg
cttcgcgtttccatcacagatgtgaacgacaatagcccgcagtttgagaggtccacatac
gaggcagaaatggcagaaaatgcccctccaggtacgcccgtcctccaggtcagagcttca
gaccgcgacattggagtcaacgggcaggtggagtacgtcttcggagctgccactgaatcc
gtacgccgactcctgcgcctggacgaggccaccgggtggctgagcgtcctccacaggatt
gacagggaagacgtggcgcaactgaggttcacagtgtcggcccgagaccgcggtcagccg
ccccgcaccgaccgcgccaccgtgattttggccgtccgggacgagaacgacaacgtaccc
gtcgtggagatccgaaagatcggacggatcccagttcgagatggagccgcgttggtgccg
gagaacgtcctggtggacacccccgtggctttggttcaggtgtcagaccgagaccaggga
gagaatggggccgtgacgtgcacagttgtaggggacgtcccattcaccctgaagccagct
ggggaaacggcgctcccgcccctacctgcagacgaagcctttgacaggaataagaaaaag
tacttcttacacacttccgccttgctagactacgaggccaccaaagagtacagtgtcacc
attgtggcggtagattctggcagccccagcctatccagcaacagctcactgatggtgcga
gttgtggatatcaatgaccatgccccggcctttccccagagcgtcgtggaggtccacttt
gctgagaacaactcacctggtgaaagggtagtcactgttgtggcctccgacgcagacagt
ggaaagaatgcagagattgcgtactccctcgaccctgcaggaaacgggccattctacata
gatgcagataatggcgatatccgtgccacgggcgttctggaccgtgagctaagagagagg
tatgaactccgggtgattgccaaggataagggcacacctcccctgcagggctccaccacg
gtcgtcgttcaagtgaccgaccgcaatgacaatgcgccaaagtttgttcaggaaatcttc
acgttctacgtcaaagagaacctgctcgccaaccgaccggtcggcatggtcaccgtgacc
gatgccgacgaaggcgagaacgccgaactcagtttgttcgttgagatggatgagaagaag
gccggcgagaaagcggatggcgaagacggcgagaagaagaaagaagaggtgttttccatc
gagaacaacacaggaaccatcttctcctcggcgtcgtttgaccgggaaaagctttccacc
tacaccttccgcgtccgcgctgtggacggaggggagcctcgtaagacttccaccgccacg
gtctcgctctttgtgacggacgagaacgacaacgcgccctccgtcacttccccggccaat
gagtcctacaccctgcttccgcctgccagcagtgcccgcaccatcgtcaggaccgtgaca
gccgtcgactcagacaccggccccaatgcggaccttcgctacgccctggtgggggggaat
cccttccagctgtttgagatcggccacgccaacggggtgatcactctggccgaaactctg
gagcggcgccacaggggcctgcatcgcctggtgatccgggtcaatgacagcggggcacct
tccctctgtgccaccgccctggtacacgtcttcatcaacgagagcttggccaacgccaca
ctagtggatgctcaggtggcccgaagcctcatggctccactgtccctggacattgcagga
gacccggacagcgagcgcgcgttagggaagcagcgcctcagcgtcgccatcggcgtcctg
gcgggggccgcggcggtcatcttggtcatcctgctcgtagtcaccgcccggcaatgcggc
gctcagggcaagaacggctacgaggccggcaagaaggagccggaggaggacttcttcagt
cccccgggggctcagccgcaggccgcccgcggcagggggtcggaccgcgggcgcaaaccc
cgccgggacaagcgcaacggaagcggcgccggcgcggcggccggcggaggcaaggcggac
cggtccctctacagcggcatcgtgacggtcaacggactgcgtcggcatggcaacgacgac
gacgaggaggacctgagcagcgccagcgagcgcctggccgcccgctactgcgccatggac
ggcgaccccggcagcccgaggatgggcggcggcaggaggcaccagtccagcccggatctg
gccaggcactacaaatccagctccccgctccccgcggtcaacctgcagccccactccccc
ccggccgagggcaagaagcaccaggcggtccaggacctgccgccttccaacacctttgtg
ggcagcggcgggtgcgcggggagcgccggctccagcagcagcagcagcgggggaagcggc
aacgccgacgccatgtccctgggatccgaccagtgctcggagtacggctgccagaccggg
aacaagtacagcaagcaggggaccctccgccgggtgaccttctccgtggtcagccagccc
caggacgccggctgctacgacagcggcctggaggactcggagacgccgagcagcaagagc
tcgtcggggccgccgcggctcggcgcgctgccgctgccggaggagggctacgagcggacc
accccggagggcagcgtgggggaggaggagcacgtggagaacgacgccaggcagctgccc
gacgtggctctgaccgggaagtgcacccgggagtgcgacgaattcggccactccgacacc
tgctggatgcccgtgcggccctcccctcgccagcgccacggcagcgaccccccgcggctc
tccaccttcgcccccggcgacgacaacaacaacctccgcggcaacgaccacgagagcgac
agcgaaagcgccggcagcgcggggagctcggagcccggggtggtcggcggcgaggagggt
caaaggttgcccctggccaacgggggtcctctcggcagcctgggggacggagaccgcaac
aggaacatgggcgaccacaaccgcaacctcctgaaccgcaagatgacctcggcgtcctac
gacacgttcagcagcgcgggcttcgggaggcgccagccggaagaggaggggggggagggc
cggaacccggccgaggtcatcccgctgacgcgcaccggcggagactacaagaccacgtcc
tgcctgacgctgtcccgccgagaggtctacctgtga
DBGET
integrated database retrieval system
