Gasterosteus aculeatus (three-spined stickleback): 120825595
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Entry
120825595 CDS
T07457
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03030
DNA replication
gat03410
Base excision repair
gat03420
Nucleotide excision repair
gat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120825595 (rfc1)
03410 Base excision repair
120825595 (rfc1)
03420 Nucleotide excision repair
120825595 (rfc1)
03430 Mismatch repair
120825595 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gat03032
]
120825595 (rfc1)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120825595 (rfc1)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120825595 (rfc1)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120825595 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
Rad17
AAA_30
BRCT_2
AAA_5
AAA_17
AAA_14
AAA_16
nSTAND3
AAA_18
NTPase_1
AAA_33
AAA_7
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
120825595
NCBI-ProteinID:
XP_040043215
LinkDB
All DBs
Position
IX:complement(1695461..1704975)
Genome browser
AA seq
1146 aa
AA seq
DB search
MDIRRFFAPTSDKSAVQKPAPAEPVNTEKKEKKEEKKKKKKNPLSSDEEVKKKKEIAKEK
SSKPEEKQKDSEKKRKKRAVIESDSEDEKPARKTKKSPKEKPTTRKTEAPPKSDPVQYVS
ETDSDSDNFQSLKKASKPKQNDATKQTKPDVALARPRVKGGPKSPPKPSATRGRTTAKSP
VTPKSTPPPPPPLKQTPTSVLDYFGNAAVQRSDKKLVASTKRKAPTQEADDLMSDEQIAK
QLQMDEDMMELEKQVHEDEEFARTLAMLDEEPHAKKARKDSAAGSPSKTNRRGSASEDAI
GPTPKKDAAPVKVSSKLATMKKKNEEQEAGSKGKRSATPTKVKISPKKEPLPSSGKKFIA
KTGTTPIAVKTSPMKLESTSPEDADKKKVNSAAFRNFLNRDGPRALGSKEIPQGAENCLE
GCMFVLTGVMESMERDDAKSLIERYGGKVTVSISKKTTYLVQGRDSGVSKLEKAESFGTK
ILDEDGLLELIRTKPGKKSKYEITAENQASKTRTPPGTTSKSTPKAQKISPSKGNSRSPH
TPSPSKTGLPHGRSSGQTARRGLGLSSSSSPPSAAMDDATLLWVDKYRPRSLKAVIGQQG
DQSCANKLLRWLRNWNRHHSGGSSKPAAARFGKPGGGKDDGAAFKAALLSGPPGVGKTTT
AALVCEELGLSYVEMNASCTRSKNSLKEVVAESLSNTSIEGFYKGTSKKVSSEHVLIMDE
VDGMAGNEDRGGIQEMIGLIKHSKIPIIFMCNDRNHQKIRSLANYCFDLRFQRPRVEQIK
GAMMSLAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDAASAR
KDTKLGPFDVCRKVFSSGEDSGHMSLIDKSDLFFHDYSLAPLFVQENYPHVRPRAAGGDL
KAHLMLLSKTADSISDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMKGYMNQFPTFPS
WLGKFSSTNKHSRIVQELASHMGLKTMSSRQAVNLDYLHYLRGALLSPLQRLGAEGAGEA
VRLLDSYQLVREDVDSIVEISAWGGQPDPYSALDSKVKAAFTRAYNKEAHLTPYALHAVK
KGRRGGPGAGSELGGEDADNEVQESEDEGVNADAMIKQKKSKATKDSKKKEKEDSGKGKG
KGKAKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcagacaagtccgcggtgcagaaaccagct
ccagctgaacccgtcaacacggagaagaaggagaagaaggaggagaagaagaagaagaag
aagaatcctctctcttcggatgaggaagtgaagaagaagaaagagatcgccaaggagaaa
agctccaaaccagaggagaaacagaaggatagtgagaagaagcgaaagaagcgcgcagtc
atagaatccgactctgaagatgagaagccagcgaggaagaccaagaagtcaccgaaagag
aaaccgacaacaaggaaaacagaggcgccgcccaagagcgatcctgtgcagtatgtctct
gaaacagactcggacagtgacaactttcagtctttgaagaaggcctccaaaccaaagcag
aatgacgcgaccaaacagaccaaaccagatgtggcgctcgctcgtccacgagtcaaaggg
gggccgaagtctccgcccaagccctccgccacgcggggcagaactacggcgaagtctccc
gtcaccccaaagtcaacgccgccgccgcctcctccactcaaacaaacccccacctcggta
ctcgactacttcggtaacgcggccgttcagcgttccgataagaagctggtggccagcacc
aagcgaaaggcccccacccaggaggccgatgatctgatgagtgatgagcaaatcgccaaa
cagctgcagatggatgaggacatgatggagctagagaagcaggtccatgaggacgaggaa
tttgccagaactctggccatgctggacgaggagcctcacgcaaagaaggctcgtaaagac
tccgccgccggcagcccctcaaagaccaaccggaggggcagcgcgtcggaggacgcgatc
ggcccgactcctaagaaggacgccgcgcccgtcaaagtcagctccaaactggccaccatg
aagaaaaagaacgaggagcaagaggctggctcaaagggcaaaaggtcagccacgcccaca
aaagtcaaaatctctcccaaaaaggagccgctcccctcgtctggcaagaagttcatcgcc
aaaacgggaaccacgcccatcgccgttaaaacgtctccgatgaagctagagagtaccagt
cctgaggacgcagacaagaagaaggtcaactctgcagctttcaggaacttcctcaacaga
gatggaccacgagctctgggctccaaggagatccctcagggtgcagagaactgtttggag
ggctgcatgtttgtgctgacgggggtcatggagtccatggagagggatgatgccaaatcc
ctgattgagcgctacggaggcaaagtgacggtcagcatcagcaagaagaccacctacctg
gtgcagggccgagacagcggagtctccaagctggagaaggcggagagttttggtaccaag
atcctcgatgaggacggtctgttggaactgatcagaaccaaaccaggaaagaagtccaag
tacgagatcactgccgagaaccaagcgtcaaagaccaggactccccccggcaccacatcc
aagagcacccccaaagcccagaagatctctccctccaagggcaattcccggtcccctcac
accccgagcccgtcgaagaccggcctgccacacggcagaagctcggggcaaacggcccgc
cgggggctcggcctctcctcgtcctcctcgcccccgtcggcggccatggacgacgccacg
ctgctgtgggtggacaagtaccgcccgcgctctctgaaggccgtcattggtcaacaggga
gatcagagctgtgccaataagctgctccgctggctgcgcaactggaaccggcaccacagc
gggggctcctccaagccagcagctgcgaggtttgggaagcccggaggagggaaagatgat
ggagcagcattcaaagcggctctgctctctggacctccgggcgtggggaagaccaccaca
gcagctctagtgtgtgaggagttgggcttgagctacgtggagatgaacgcgagctgcact
cgcagcaaaaacagtctgaaggaagtggtggcggagtcactcagcaacacgagcatcgag
ggcttctacaaaggcacctccaagaaagtgagcagtgaacacgtgctgatcatggacgag
gtcgatgggatggccggcaacgaagaccgcggaggaatacaggagatgatcggcctgatc
aaacattcaaagattcccatcatcttcatgtgcaatgatcgtaaccaccagaagatcagg
tcactggcgaactactgcttcgacctgcgcttccagaggccgcgggtggagcagatcaag
ggagccatgatgtccctcgcctacaaagaggggatcaagatcccgcccccggctctgaat
gaaatcatcctagcctccaatcaggacgtccgacaggtgatccacaacctgagcatgtgg
tcggccaaagacaaggtgatgacgtacgaccagtgcaagtcggacgcggccagcgcccgc
aaggacaccaaactggggccgttcgatgtgtgcaggaaggtgttcagctcgggggaggac
agcggccacatgagcctcatcgacaagtcggacctcttcttccacgactactcgctcgcg
ccgctcttcgtccaggagaactacccgcatgttcgcccgcgggccgccggtggggacctg
aaggcccacctgatgttgctcagcaagaccgctgactccatctctgacggagacctggtg
gaccgacagatccgctccaagcagaactggtcgttgctgcccacccaggccatctatgcc
agtgttttacccggcgagctcatgaagggctacatgaatcagttccccaccttccccagc
tggctcggcaagttctcctccaccaacaaacattcccgcatcgtgcaggagctggcctca
cacatgggtttaaaaacgatgagcagcagacaggcggtgaacctggactatctgcactac
ctgcggggggcgctgctcagccccctgcagaggctcggagcggagggcgccggcgaggcc
gtgcggctgctggacagctaccagctcgtccgggaagacgtggacagcatcgtggagatc
agcgcgtggggcgggcagccggacccgtactccgcgctggactctaaggtgaaggcagcg
ttcacgcgggcctacaacaaagaagcgcacctgacgccgtacgctctgcacgcggtgaag
aagggccgccgcggggggccgggggcggggtctgagttgggaggagaggacgcggacaac
gaggtgcaggagtccgaggacgagggagtaaacgccgacgccatgatcaaacagaagaag
tccaaagccaccaaggactccaagaaaaaggagaaggaagattctggcaaggggaagggc
aaaggcaaggctaagaaatga
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integrated database retrieval system
