Gasterosteus aculeatus (three-spined stickleback): 120825599
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Entry
120825599 CDS
T07457
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03030
DNA replication
gat03420
Nucleotide excision repair
gat03430
Mismatch repair
gat03440
Homologous recombination
gat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120825599 (rpa1)
03420 Nucleotide excision repair
120825599 (rpa1)
03430 Mismatch repair
120825599 (rpa1)
03440 Homologous recombination
120825599 (rpa1)
03460 Fanconi anemia pathway
120825599 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120825599 (rpa1)
03032 DNA replication proteins [BR:
gat03032
]
120825599 (rpa1)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120825599 (rpa1)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120825599 (rpa1)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120825599 (rpa1)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120825599 (rpa1)
MMR (mismatch excision repair)
120825599 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
120825599 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
RADX
DUF223
Motif
Other DBs
NCBI-GeneID:
120825599
NCBI-ProteinID:
XP_040043225
UniProt:
A0AAQ4PEH3
LinkDB
All DBs
Position
I:complement(12329048..12350152)
Genome browser
AA seq
600 aa
AA seq
DB search
MARLSEGAIEALSKGDPVADAVLQLVNIRKIDSGNGAIRFRVMMSDGLNSMSSFMLSTQL
NFMAEENVLAPNCICILKKHVTNILKDKRRVVVILEIEVIKPAQMVDGRIGDPIALTEGT
KGQQQSAPNPENRQPLQQQQNRNEGLKGFSRDFGKKTPSAMPSTPGGSSKVVPIASLNPY
QSKWTIRARVTNKTSIRTWSNSRGDGKLFSMEILDESGEIRVTGFNQEVDKFFGLVEVGK
VYYISKGSLKIANKQYTSVKNDYEMSLNGESTIIPCDDAVDVPVIQCDFVSIGDLENREK
DSIIDVIGVCKSVDEVTRLTTKSNKEVSKRTVNLIDMSGKLVTVTLWGEEAEKFDGSGQP
ILAIKAAKLSDFGGRSISASFSSTLMINPDIPEAYKLRGWYDKEGHALDGQSLTEVRGSG
GGLTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQHNG
MFRCEKCDKEFPNFKYRLILSANVADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNET
AFDEIFQQANFNTFVFRSRVKLETYNDESRIKATVMEVKPVDHKEYSLRLITNIRKLAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggctctcagagggtgcgatagaggctctatcaaagggcgaccctgttgccgac
gcagtgcttcagttggtgaatattcgcaagattgacagtggaaacggtgcgatccggttt
cgggtgatgatgagtgatggactgaacagcatgtcctccttcatgctctcaacgcagctg
aacttcatggctgaggagaacgtattggcccctaactgcatctgcattctgaagaagcat
gtgaccaatatactgaaggataaacgacgggtggtggtcattttagaaattgaagtcatc
aagcctgctcaaatggttgatggaagaataggtgatcccattgccctcacagagggtaca
aaaggccagcagcagtctgccccaaaccctgaaaaccgccaaccactacagcagcagcag
aatagaaatgaagggctcaaagggttcagtagggactttgggaagaagaccccgtctgct
atgcccagtactccagggggcagctccaaagttgtgcccatcgccagcctcaacccctat
cagtccaagtggaccatccgcgcccgcgtcaccaacaagaccagcatccgcacgtggagc
aactctcgtggagatggcaaactcttctccatggagatcttggacgagagtggggagatt
agagtgacaggttttaaccaagaagtggacaagttcttcggcctcgttgaggttggaaag
gtctactacatctccaagggctccctgaagatcgccaacaagcagtacacgtcggtgaag
aacgactacgagatgtctctcaacggggagtccaccatcatcccctgtgacgacgccgtc
gacgttcctgtgatacagtgcgactttgtctccattggggacctggagaaccgagagaag
gattccatcattgatgtgatcggggtgtgtaagagtgtggacgaagtgacccgcctcacc
accaagtccaacaaggaggtgtccaagaggacggtcaacttgatagacatgtccgggaag
ctggtgaccgtcacgctgtggggagaggaagcagaaaagtttgatggttctggacagccc
attttagccataaaggcggcaaagctctcggactttgggggccgctccatctctgcatcc
ttcagcagcaccctgatgatcaacccagacatcccagaggcgtataagctccgaggctgg
tatgacaaggagggccacgccttggacggacagtctctgaccgaggtgagaggcagcggg
ggaggactcaccaactggaagaccctgtctgacgtcaagacggaacacctgggacacgga
gacaaggcggactactacacctgcatagctaccatagtgtacctgcgcaaggaaaactgc
ctctaccaggcctgtcccagccaagactgcaacaagaaggtggtcgaccagcacaacggg
atgttccgctgtgagaagtgcgacaaagagttccccaacttcaagtaccgcctcatcctt
tccgctaacgttgcagattacgcggacaaccagtgggtgacttgcttccaggagagtgca
gaggccattctgggccagaatgcagcttacctggggcagctcaaggactctaacgaaact
gccttcgacgagatcttccaacaagccaacttcaacacatttgtcttccgcagcagagtg
aagctagaaacgtataacgatgaatccaggatcaaagctaccgtgatggaagtgaagcct
gttgaccataaggagtacagcctgcggttgatcaccaacattaggaagctggctgcacag
tag
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integrated database retrieval system
