Gasterosteus aculeatus (three-spined stickleback): 120825735
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Entry
120825735 CDS
T07457
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120825735
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120825735
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
U-box type E3
120825735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-CCHC
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120825735
NCBI-ProteinID:
XP_040043467
LinkDB
All DBs
Position
IX:complement(16953448..16967379)
Genome browser
AA seq
1763 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLNELKKQIMGRERLKATDCDLQITNAQTREEYTDD
EVHIPKHSSVIVRRTPLGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSMSLAQLAKTANL
VDANASEEDKIKAMISQSNHEYDPMHYSKKAVGPPPAHYTCFRCGKAGHYIRQCPLLMIQ
DKSVEGTKPVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDTDPIPDELLCPICNDLMTDAVVIPCCGNSYCDDCIRTALLDSEEHTCFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHVRKQLQNAAPPPPRPQLVRHSRQQDPLM
AHIAPPPSTSAPAAAPQVQAPPPAPATAPTSVLAPARAPSPAPAATSAPTPPHAAAAEEE
EDDDSPAAAPAADHPSPMHSTSHGEPPPPDETNPEPTVRPESSGTSNYHLNVMGHPPPIR
PPHPPGHQSRPHQPLRGGGGRPWERFYRGRGDHPSTHLHTAPPPAPQPPVYPAPSMYPPP
PQSYPPPYTSGLLPPVMGYQPQPMYATGPPGLNPPWVPPGTQPPLMPLPPLGQPPLSKED
FYRQRHLRQDNVTSKLDEFTKDFHKELMKYRNAPKRRRPSYSRSRSFSRSPFSRSPYSRS
RSRSRSRSYSYSPSRSRSRSHGRSYPRSPYSRRNGRSYGRSRSRSRSRSYGYRRSGSPRS
PPPYRPGAWEGPEGAGPYRSRSRSPGPGGFRTRSPGGRKPPPRELPPYELKGPSPGGNER
WERERYRQWEKEYADWYNQYYKDYDNPHTSMHHRGRASRDRERDRMSPLSRNYSPQGRGR
RGREERGPPPNHPPSSSSSAAKSSAKVLKPKKVKKRRTGDESEGSHQSVDRGDATPVRDE
PMDEIPSLVITSPMSSKASAGAATSKAPASKSTATPVKPSTKSTSKTPSDRTKKDKGQKV
KAKVKPESVKGKSEKGKKRPGEDVVAKKDSSSPSSGTKPLKTIKTKPEDPPNSIPKKEKA
KSAAVRPGLLKTPPLSCQSLPLHHSSLHDGPRSGHDMRGRRDLPQGGGLLPTPHQHGLQL
LHRPPSPDSRRRMGEEGRSLLGPPPGKLRRIDGLVVGCDVLSHSHMSHQPPLHRLPPSSD
RPGLLPIPGSRDMGRGDPDRGSIRPLMDLQVKPLTQRRIKLNRDLGRKSSTETPADRAPS
ASEKTTSTSDRSASATLSEGDRPVSTADGALRKERSASAERGVGRDRPGSAGERPQGSDR
EQSRSSGLDRERDRASGSDRGLMSDRDRDRDRERDRDRDRERDRDRDRVSSSQKIAVTVE
RDLEGERSTRAERKSSSAGGRSVSLDKMTIAEKSSACKSSTDAPEKPSASSKERGDGSER
SAKSDRSASKDKTERSVPSGEKPAAAHREAVKDAEEPNVKSKPRISRKAPTSSSRSTQET
KRDSDKDPKSASSKPAEQPPSSPVKSRGRSPSISPVPVAHSEEPLIQPPPRSKWEREDDE
EGLENGPSAPKEPSPVPQRSRGREVQAEAPKPVRSEGREASREERRAPAREERKGRAPRE
ESRGARTAQTSSDKPTKTKLVREEGRGGREEGRAAAREEGRGGGRDEVRGGPGKEERAAE
CRGGGREESRGLEPRRQRLCSDLGLATDEAAFVPDYSEGEGSETERGRSGSASLSASQPS
SPTQSNHSSSAAAATAGGVVDKKKKKHKKHKKHKKHKKHGVHAKEADHKENKHKHKKKKH
KKSKDKDVEEEERLEKAEEGAPH
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataagttctcttccaaactggactacaacactgtcactttcgat
gggctgcatatcaccctcaacgagcttaaaaagcagataatgggccgagagcggctcaag
gccacagactgcgacctgcagatcaccaatgcgcagactcgagaagaatacaccgatgat
gaagtccacatcccgaaacactcgtctgtgatcgtccgtcgcactccgcttggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcttct
agacccacggattcttctccatccatgtcgctcgcccaacttgccaagactgctaacctg
gttgacgctaatgcatcggaggaggacaagattaaagccatgatatctcagtccaatcat
gaatatgacccaatgcattactccaagaaagcggttggacctccacctgctcactatacc
tgctttcgttgtggaaaagctggtcactacatccggcagtgccccttgctgatgatccag
gataagagcgtggagggcaccaagccggtgaggatcagtaagggcattcctcagagcttc
atggtgaaggcagagccgggcaccaaaggagccatgttgaccagcactggagaatatgct
atacctgcgatagatgctgaggcatacgcacaaggaaagaaggagcgccctccgtttgtt
ccacatgaccagtcatcatctgaggacgataccgacccgatccccgatgaactcctgtgt
cccatttgcaatgacctgatgactgatgccgtggttataccgtgctgtggaaacagttac
tgcgatgattgtattaggacggccttgttggactcggaggagcacacctgcttcacatgc
aaacagtccgatgtttcacccgataatctcatcgccaacaagtttcttcgacaggcggtg
aacaactttaagaatgagacgggatacacaaaacacgttcgcaagcagctgcagaatgcc
gccccgccaccgcctcgccctcagttggtcaggcattcaagacagcaggaccccctgatg
gctcatatcgctccccctccctccacaagcgcacctgccgccgcccctcaagtacaggcc
ccgcccccagctcctgcaacggcccctacgtcagttcttgcacctgcacgagccccttct
cctgcccctgctgctacttctgctccgacccctcctcatgctgctgctgctgaagaagaa
gaagatgatgattcgccagccgctgcacctgctgccgaccacccttctcctatgcactcc
accagtcatggggagccgcccccaccggatgagacaaatccagaacctactgtgagaccg
gaatcttcaggaacctcaaactaccatttaaatgtcatgggccacccgccacctattagg
ccgcctcatccaccaggtcaccagtcccgaccgcaccagcctctcagggggggaggcggc
agaccgtgggagaggttttacagaggaagaggagaccacccctccactcaccttcacacg
gctccaccacctgcaccccaacctccagtgtacccggctccgtccatgtacccgcccccg
ccccagtcctatccccccccgtacacctctggccttctccctcctgtcatgggttaccaa
ccgcagcctatgtatgccaccggaccaccagggctcaacccaccctgggttccccctggt
acccagccccctcttatgcctttaccccccctcggtcagccccccctctctaaggaagat
ttctacagacagcggcacctccgacaggacaatgtcacatccaaactggatgaatttact
aaagacttccacaaagagcttatgaagtacagaaatgcaccaaagagacggagaccatcg
tattcaagatcccgctcattcagtcgctccccattcagccgctccccttactcccgctcc
agatccaggtcaagatcccgttcttactcttattctcccagtcgatcccgctcacgctcc
catggccggtcgtatccccgctccccttactcaagacgcaatggccgcagctacggacga
tcgcgctcccgctcccgttccaggtcttacgggtatcgtcgctctggttcaccacggtcc
cctcccccctaccgaccaggtgcctgggagggaccggaaggggcggggccatacaggtcg
cggtctcgctcgcctggccccggtggcttccggacccgcagccccggtggacgaaagccg
cctcctcgagagctcccaccgtatgagctgaaaggtccgagtcccgggggcaatgagcgc
tgggaacgagaacgctatcggcagtgggagaaggagtatgcagattggtacaaccagtac
tacaaagactacgacaacccgcatacctcaatgcatcacagaggtcgcgccagcagagac
agggagagggacagaatgtccccgttatcaagaaactactccccccaggggagaggaaga
cgaggaagagaagagcgagggcctccccctaaccatccaccatcctcttcctcatcagcg
gctaagtccagcgctaaagtcctcaagccaaagaaagtaaaaaagagaagaactggggac
gaatcagagggatcgcatcagtccgttgaccgaggagatgcgactcccgtcagagacgaa
ccgatggacgaaatcccatcactcgtcataacgtctcccatgtcctcaaaggcttcagct
ggagccgcaacctctaaagctccagcttctaaaagcaccgctacgcctgttaaaccctcc
accaagtcgacatcaaagactccgtccgatcggacaaagaaagacaaaggccagaaggta
aaagctaaagtgaagccggagagcgtgaagggaaagagtgaaaaggggaagaaaaggccc
ggagaagatgtggtggccaaaaaagactcctcctccccctcctctggcacaaaaccgcta
aagaccattaaaaccaaaccagaagaccctcccaactccatccctaaaaaggaaaaggct
aaaagcgctgcagtgaggccgggcctgcttaagacccctcctctgtcctgccagagcctg
ccgctgcatcactcctctcttcacgacggccctcgatccggccacgacatgcgggggaga
agagaccttcctcagggtggtgggctcctccctacccctcatcaacacgggctgcagctc
ctccacaggcctccctcccccgacagtcggaggaggatgggagaggagggccgctcttta
ctcggaccccctcccggcaagctgaggagaatagacggtctggtggttggatgtgacgtc
ctctcccactctcacatgtctcatcagcccccgctgcacagactgccaccctcctctgac
aggccgggtctccttcccattcccgggagccgtgatatgggccgaggagacccggaccga
ggatccatcagacctctaatggaccttcaggtgaagccactgacccagaggaggatcaag
ttgaacagagacttgggcaggaagagcagcacagagactcctgcagacagggcgccctct
gcttccgagaagacgacctccacctcagaccgatcggcctctgctaccctctccgaaggg
gaccggcccgtcagcacggcggacggggctctcagaaaggagcggtcggcatctgcagag
aggggagtcgggagagaccgaccaggaagtgctggagagaggccgcagggttcagaccgg
gagcagagtagaagctcgggactggacagagagcgggaccgagcctcagggtcagaccga
ggcttgatgtctgaccgggaccgggacagagacagggaacgggacagggacagggatcgg
gaacgagaccgggacagggacagggtctccagctcccagaaaatagcagttacagtagag
agggacctcgaaggagagaggtcgacgagggccgagcgaaagagctccagcgcgggaggg
aggtccgtctctctggataaaatgaccatcgccgagaagtcgtcggcctgtaagagctcg
acggacgctccggagaagccaagcgcctcgtctaaggagaggggcgacgggtccgagcga
tcggctaaatccgacaggagtgcgtccaaggacaaaaccgagcggagtgtcccctcagga
gagaagccagctgccgcccacagagaagcagtgaaagatgcagaggagcctaatgtgaag
agcaaacccaggatcagcagaaaggccccgacgagctcctctaggtccactcaagaaaca
aagcgagactctgataaggatccgaagagcgcttcctccaaacctgcagagcagcctcct
tccagccctgtgaagagccgtggccgcagcccgagcatcagcccggtgcccgtcgcccac
agcgaggagccgctcattcagcctcctcctcgctccaagtgggaaagggaggacgatgaa
gaaggcctggaaaacggccccagtgcccccaaggagccctcccccgtgccacagaggagc
cgaggcagagaagtgcaggccgaggcacctaaaccggttaggagtgaaggccgggaggca
tcgcgggaggagagacgagcgccggcgagagaagagaggaaagggagagcgccgagggag
gagagccgaggcgccaggacggcacagacgagttccgacaaaccaaccaaaacaaaactt
gttagggaggaggggaggggagggcgagaggaagggagagctgcagccagagaggagggc
cgaggtggagggagagacgaggtgcgagggggcccagggaaggaggagagagctgcagaa
tgccgaggaggaggacgagaggagagccgcggcctggagccccggaggcagcgattgtgc
tccgacctcggcctcgcgacggacgaagcggcctttgtgcccgactacagcgagggcgaa
ggctcggagactgagagagggaggagcggcagcgccagtctgtccgccagccaaccctcc
agccccacccagagcaaccacagcagctcggcagccgccgccaccgccggcggcgtggtg
gacaagaagaagaagaaacataagaaacataagaaacacaagaagcacaagaagcacggc
gtgcatgccaaggaggcagaccacaaggagaacaagcacaaacacaagaagaagaaacac
aaaaagagtaaagacaaagatgtggaggaagaggagaggctggagaaagccgaggaaggg
gctccgcactaa
DBGET
integrated database retrieval system
