Gasterosteus aculeatus (three-spined stickleback): 120825799
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Entry
120825799 CDS
T07457
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120825799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120825799
03009 Ribosome biogenesis [BR:
gat03009
]
120825799
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120825799
Spliceosome [BR:
gat03041
]
Complex A
U2 snRNP components
U2 related factors
120825799
Complex B
120825799
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120825799
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
90S particles
Helicases
120825799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
Flavi_DEAD
SRP54
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
120825799
NCBI-ProteinID:
XP_040043568
LinkDB
All DBs
Position
IX:13507956..13515111
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AA seq
753 aa
AA seq
DB search
MSKRHRLDLGEDYSTKKRSEGRDRDRDREDRSRDRERDRDRDRDPKPTNVPSNSTVPLPC
LAPIKQLAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKERFGDIITRHQSFVLVGET
GSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIR
FEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQ
RGDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQI
HMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLPPQQQQRIFE
PPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAIS
KASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDL
VHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFN
CSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQNHEANQ
WCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCTGFFMQVA
HLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIA
PQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgccttgatttgggtgaagactactcaaccaagaagaggtcggaa
gggagagaccgtgacagagaccgcgaggaccgctccagggatcgagaaagggacagagat
cgggacagagacccgaagcccactaatgtcccgtcgaacagcaccgtgcccttgccgtgc
ttagcacccatcaagcagttggctatgcagcagcagatcaacccgttcaccaacctgccg
cacacgccgcgcttctacgagattcttaagaagaggttacagctcccggtgtgggagtac
aaggaaagattcggcgacatcatcacacgtcatcagagctttgtccttgtcggagaaact
ggctctggaaagacaacacagatcccacagtggtgtgtggacatggtgaggggcttgcct
gggcctaagcgggcagtagcctgtactcagccaaggagagtggcggctatgagcgttgct
caaagggtggccgacgaaatggacgtcatgcttggacaggaagttggctactccattcga
ttcgaggactgcagctctgcaaagacgatacttaagtacatgacagatggcatgttgcta
cgagaggctatgaacgacccgttgctggagcgatatggtgtgatcattctggacgaggcc
cacgaacgaactctggccacagatatactaatgggagtactgaaggaggtagtgcgtcaa
agaggcgatctgaaggtgatcgtcatgagtgccactctagatgctgggaagttccaagtg
tatttcgacaactgtcctctcctgaccatcccaggccgtacccaccctgtagagattttc
tacactcccgaaccagagcgagattacctcgaggcagcgatccggaccgtcatccagatt
catatgtgtgaggaagatgaaggcgactgccttctctttctcactggccaagaggaaatt
gatgaggcctgtaaacggatcaagcgtgaggtagatgaccttggacctgatgtcggagac
atcaaaatcattccactgtattccacattgccgccacagcagcagcaaaggatctttgag
ccgcctcctccgaggaagcccaatggtgctataggaagaaaggttgtggtttcgacgaac
attgcagagacctctctgacaattgatggcgtggtgtttgttattgatccaggatttgct
aaacaaaaggtttacaatccccgaatccgagttgagtctttgctggtcacggccatcagt
aaagcttctgctcagcagagggcaggacgagccggcagaacgcgtccagggaaatgtttc
cgcctctacacagagaaggcctacaagaccgagatgcaggataacacataccccgagatt
cttcggtctaacttgggatcggttgtgctgcagctgaaaaagctgggtattgatgacctc
gtgcactttgacttcatggatccacccgctcccgagacactgatgagagcccttgagctt
ctgaattacttagcagcgctcaatgatgacggtgacctgaccgagctgggctccatgatg
gcagagttccccttggaccctcagctggctaagatggtcattgccagctgcgagtttaac
tgctctaacgagatcctttccattactgccatgctgtcagtcccacagtgttttgtccgg
cccacggaggccaagaaggcagcagacgagtccaagatgaggtttgctcacatcgacgga
gaccacttgacgctgctcaacgtctaccacgccttcaaacaaaaccacgaggctaaccag
tggtgctacgacaactttgtcaactaccgctcactgatgtccgccgataacgtgcggcag
cagctgtcgaggatcatggaccgcttcaacctgccccgccgtagcacagagttcactagc
agagattactacaccaacatccgcagagcgctctgcaccggcttcttcatgcaggtggct
catttggagcgcacgggtcattacctcacggtcaaagacaaccaagtggttcaactgcac
ccgtctaccgttctggaccacaagcccgagtgggttctctacaatgaatttgtgctcacc
accaaaaactacatccgaacctgcacagacatcaaaccggagtggctggtgaagattgca
ccccagtactatgaaatgagtaacttcccacaatgtgaggcaaaaagacagctggaacga
atcgttgccaaactagagagcaaggagtattcccagtactga
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