Gasterosteus aculeatus (three-spined stickleback): 120825889
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Entry
120825889 CDS
T07457
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120825889 (helz)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
120825889 (helz)
3'-5' decay
Other 3'-5' decay factors
120825889 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
DDHD
PAM2
zf_CCCH_4
PhoH
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
120825889
NCBI-ProteinID:
XP_040043674
LinkDB
All DBs
Position
IX:9252505..9290901
Genome browser
AA seq
2149 aa
AA seq
DB search
MADRRAEKSCEEASRSLARREYEAAVSHSTDALVVLAPPAPPSGAPVPPSSPSLVAAAGP
LRSRALLYRISAFLQLKNYDEADEDCKHVLAEEIARGDGSLKASLRFMLLDGSLQEVAII
LSKALYGEPMNGIVAKDLTRLKMLFSEIELIKREMAPEYTEEQEEEFQDGWQFRPPPRGV
TSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTESY
METLIEKWMNSLSPEKVLSDYLEGVNVETSSSLSVTVTTKKSAHSWTFSFLCRPPRKLFR
IALLYDAHRPHFFITGVSSGERLQALPNGCQEWTPGEEVAADNGLDHCVYNVAVGFSTEI
FGTFRQTVVFDFGSEPVLMKRIMVDAASIEDLEHLMAARQQLLITAKRWDPSCKTIVEFC
PNETMADLERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEVS
KFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLV
LPFGRDGISNHPPPGVKERVYEAVIEEKTKDYIFLRICKNCCDELGLLPDRELQVELQFQ
LNRLPLCEMHYALDRIKDNGILFPDIGLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAIT
TPVSIPLPPILIIGPYGTGKTFTLAQAVKHILRQDTSRVLICTHSNSAADLYIKDYLHPY
VEAGNAHARPLRVYFRNRWVKTVHPVVQQYCLISNTHVNFKMPTREDILRHRVVVVTLST
SQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKHTRIVLAGDHMQLSPFVYSEF
ARERNLHVSLLDRLYEHYPPEYPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPSH
KDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVSWGKLDDSSIGVVS
PYADQVFRIRAELRKKRMHEISVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQ
LVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHEN
SSLHGITFEQIKSQLEALELKKTYVLNPLAPEFIPRALRPQQGHHSSSQALHPHHHPHPQ
HAQAASNKQGPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSPPKGKHANHTEHLPP
EGYAQANPAVLMGNPIRAFTPPLGGPPAAMGKSPSPVQRIDPHTGASILYVPAVYGGNMV
MSMPLTLPWPGYQNRFPVDPRIMSHPAAMAYNFNLLQAQNRGSPIPYSGVAHPTHLGIGQ
PSPDKELQADPIRNDFLGKLEGCPKSEQSRLQTPERKSTDMKEKQGDLDSGQSRSLDPQP
DGLVGFPNSLLHRKDPTAAQRPLNYHLAPPNQAFPPHPASGRAFPPQYPVSRLPYRVGQP
QHPGMAPPSQQQQQLSPAYTGGTHNASFFIGPIPSHRAVQSPTLDGPAPGGVEDMSSSIR
TPMGHPGSHHPGLSQHNRVNSFGEDGQDVGLGDSLENKCRQLTATNHTVPLLDLQGPLAL
EALSQQQQAARLGQWGEAAGPFLQGSVPFPLPQQLAHLAQPGMARFPPQLLQTANWGLSA
NIEDEAVSSASTGPPFTRYPGLLRELPPQEQPEPRDAIEMQPPPQSRLLQYRQSQSRASG
DPSSTLAATPNHASPFPSGPYSHDAGRDLLSDNPLNNPALQQQHPGNPLYNTGSYPHQQP
THSAGNPSSQVKYLLQEAQWPHGGAASVSPPQQNHLLGNQAHGLPYGLPIMAHPSRQEQV
HLMQLHQQQQQQQQQQQQQQQQQQHHHQQQHHHHHHHHQQHHHHHQPQQQQPPLQQQPQQ
QSQVPDQESYHPLSPRTSAATALHNVDEYEPRGPGRPLYQRRISSSYPEESSPANAHNAL
SQQQQPCTSDIQDHAHQHIQHHQHPHAPYGYPSHDLWPSNGGGPGSFQNIPCNGAGTLSQ
HRDLLASKALRQSEEQVKAEVTAAQQTHPHPLNSLQHLGQFPPLMPKNKQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQLQLQQQQQQPPPPPPPPPPPPPQAPTEASQGAPNLSKPPTM
SYASALRAPPKPRAVRPEQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6450 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttagccaggcgg
gagtacgaggcggcagtcagccacagcacggatgccctggtggtccttgcgccgccggcc
ccaccctccggcgcccccgtcccgccgagctccccgtccctcgttgctgctgccggaccc
cttcgcagccgagccctgctctatcgaatttctgccttcttgcagctgaaaaactatgac
gaagcagatgaagactgcaaacatgtccttgcggaggagattgccagaggtgacgggtcg
cttaaggccagcttgcgcttcatgctgttggatggcagcctgcaggaggtggccatcatc
ctctctaaagccctgtatggggagccaatgaatggcattgtcgcaaaagacctcaccaga
ttaaaaatgcttttctcagagattgagttgataaaaagggagatggcgcctgaatacaca
gaagaacaggaggaagagttccaagatggctggcaattccggcctcccccccgaggcgtc
accagcagtgaggagtacaccctctgtaaaaggtacttggagcaaggtctgtgtcggtac
ggggcccagtgtacgtcggcccattctcaggaggagctgatggagtggcagaagcgatac
gcgtcacgcctcatccgcctcaaacagcagcaggagagcaaacacttcaccgagagctac
atggagaccctgatagagaagtggatgaactccctctccccagagaaagtgctaagtgac
tatttagaaggagtgaatgtagaaacgagctccagcctctctgtgaccgtcaccaccaaa
aaatctgcacactcttggaccttctccttcttgtgcaggccgcctagaaagctgttccgc
atcgccctgctctatgatgcgcaccgaccccacttcttcatcacaggtgtgtcatccggg
gagcggctgcaagctctccccaacgggtgccaagagtggactcccggagaggaggtcgca
gcagacaacggccttgaccactgtgtgtacaacgtagcggtgggcttcagcacggaaata
tttgggaccttccgacagaccgttgtttttgactttggctcggagcctgtgctgatgaag
cggatcatggtggatgcggcctctattgaagacttggagcacctgatggcagccaggcag
cagctcttgatcaccgcaaagcgctgggacccgtcctgcaagaccatcgtggaattctgt
ccaaatgaaacaatggccgacctggagcgcagcctcctttctcgctatcagatccctctg
tcggcagatcagctgttcactcagtcagtcctggacaagaccctgaccaaagacaactac
caggcccggctacatgacctgctctacatagaagagattgctcaatacaaggaagttagc
aagtttaacatcaaagtgaatctccagctcgtcaccagcttcatgctgacaggcatctct
gtcggggccaagtatgcccagaacggacagctctttgcacgcttcaaactcactgaaaca
ctgtctgaggacacattggctggacggctcgtgatgaccaaggtgaattcagtcctagtg
ctgccatttggccgtgatgggatcagcaatcatccgcctcctggggtcaaggagcgtgtt
tacgaggctgtgatcgaggagaagaccaaggactacatcttcctgaggatctgcaagaac
tgctgtgatgagctcgggctgctgcccgacagggaactacaggtggagctccagttccag
ctgaacagactgccgctctgtgagatgcattacgctctggatcgcatcaaagataatgga
atccttttccctgacattggactggtccccaccatcccctggagccccaacaggcagtgg
gacgagcagctggatccccgtctgaatgccaagcagaaagaggccatcctggccatcacc
acacccgtctctatccccctgcccccgatcctcatcatcgggccctacggcaccggcaag
accttcacgctggcgcaggctgtcaagcacatcctgcgccaggacaccagcagggtgctg
atctgcacacactccaacagtgcggccgacctttacattaaggactaccttcatccttac
gtcgaagcaggcaacgcgcatgccagacctctcagggtgtacttcaggaatcgctgggtg
aagacggttcacccggtggtccaacagtactgtctcatctccaacacacacgtcaatttc
aagatgcccacaagggaggacatcctcaggcaccgcgtggtggtggtcacactcagcacc
tcccaatacctctgccagctcgacttagagcccgggctgttctctcatatccttttggat
gaagcggcccaggccatggagtgtgaaaccatcatgccttttgctctagccagcaagcac
acccgcatcgtgctggccggagaccatatgcagctcagtccgtttgtgtacagcgaattt
gcgcgtgagcgtaacctgcacgtgtcactgctggaccggctgtatgagcactaccccccc
gagtacccttgtcgcatcctcctgtgcgagaactaccgctctcacgaagccatcatcagt
tacacgtctgaattattttatgatgggaagttaatggcaagtgggaagcagccctcccac
aaggacttctaccctctgaccttcttcacagccagaggagaagatgtccaggagaagaac
agcactgcctattacaacaatgcagaggtattcgaaattgttgagcgggtggaagagttg
cgcaagaagtggccggtgtcctggggtaaactggacgacagcagtattggagtagtgtca
ccgtacgccgaccaggtgttccgcattcgcgctgagctccgaaagaagagaatgcacgag
atcagcgtggaaagagtcctgaatgtccaaggcaaacagttccgggtgctgttcctcagc
acggtgcggacgcggcacacctgcaaacacaagcagacggccatcaaacgtaaagagcag
ctcgttgaggactcgacagaggacctcgactatggattcctctccaactacaagctgctc
aacacggccatcaccagagcccagtccctggttgcagttgtgggagaccccattgcactc
tgctctgttgggcgctgcagaaaattctgggagcactttatctccatctgccacgaaaac
tcaagtctccatggcatcacctttgagcagatcaagtctcagctggaggccctggagctc
aagaagacctacgtcctcaacccattggccccggagttcatcccccgtgccctcaggccg
cagcaaggccaccactcttcatcgcaggccctccacccccaccatcatccacatcctcag
catgctcaggccgcctctaacaagcagggtccgcaacaacaacaacaacaacaacaacag
cagcagcaacaacagcagcagcagcagcaacaacaacagcagcagcagcagcaacaacaa
caacaacagcagtccccccctaagggtaaacatgcaaaccacacagagcatcttccgcct
gaaggatatgcgcaagccaacccagctgtgttgatgggaaaccctattagggcattcacg
ccacccttgggtggcccaccagctgccatgggcaagtcacccagtcctgttcagaggatc
gatcctcatacgggcgccagcatcctctacgtccccgctgtgtacggtggcaacatggtc
atgtctatgcccctgactttgccttggccaggttaccagaatcgattccccgtagaccct
cggatcatgagccacccggcagccatggcctacaacttcaatctgttgcaggcccaaaat
cgaggctcccccatcccatacagtggggtggcccaccccactcatctaggaataggccag
cccagccccgacaaggagctgcaggcagaccccatcagaaatgactttttaggcaaatta
gaaggatgtccaaagtccgaacagagccgtcttcagacaccagagaggaaaagcaccgac
atgaaggaaaagcagggagatttagactcgggccagagccgaagtctagatcctcagcca
gacgggctcgttggatttcccaattcgctgctccatcgaaaagatcccaccgctgctcaa
agacccctcaactatcacctggcaccacccaaccaagctttccctccacaccctgccagt
ggaagggccttccccccacagtacccggtctctaggcttccttatcgggttggccagcct
cagcacccagggatggccccgccgagtcagcagcagcaacagctcagccccgcctacacc
ggaggcacccacaacgcttccttcttcatcggccccataccttctcacagggctgtccaa
tcgcccacattggatgggcccgcgcctggaggggtggaagacatgagtagctccattcgg
actccaatgggccacccggggagtcatcacccggggctgtcacagcataaccgcgtcaac
agctttggggaggacggacaggatgtcggccttggagatagtttggaaaataaatgccgc
caactgactgcaactaatcacactgttccccttttagacctgcagggccccctggcttta
gaggccctgagccagcagcagcaggcagccagactgggccagtggggggaggcggcgggc
ccttttctccagggtagcgtccccttccctcttccccagcagcttgcccaccttgctcag
cctggcatggctcgcttcccccctcagctactccagacagccaattggggcctgagtgcg
aatattgaggatgaagctgtctcttctgcttccacaggaccacctttcaccaggtacccg
ggccttttgagagagcttcccccacaggaacaacctgaacccagggatgcaatcgagatg
cagcccccacctcaatcccgtctccttcagtaccgtcagtcccagtcccgtgcctcaggt
gacccttcatccactttagctgccacccctaatcacgctagtcctttcccatcaggaccc
tattcacatgacgcaggccgcgatctccttagcgacaaccctctcaacaacccagctctg
cagcagcagcatccgggaaaccccctgtataatactggtagctacccacatcagcaacca
acccactctgccggcaacccttcatcccaggtcaaatacctgctgcaggaggcccagtgg
cctcatggtggagctgcgtcagtaagcccaccgcagcagaaccacctgttggggaaccag
gcccacggccttccttatggactgcccatcatggctcatcccagcaggcaggagcaggtc
cacctgatgcaacttcaccagcagcagcagcagcagcagcagcagcagcagcagcaacaa
caacaacaacaacaccatcatcaacaacagcaccatcaccaccaccaccaccaccaacaa
caccaccaccaccaccaaccacaacaacaacaaccaccactgcaacagcaaccacaacaa
caaagtcaagttccagatcaggaaagctaccacccactttcccccagaacatcagcagcc
acagcccttcacaatgtagatgagtatgaaccccgaggtccaggccggcctctctatcag
cgtcgcatctcttctagctacccagaggaatcgtctccagccaacgcccacaacgccctg
tcccaacagcaacagccctgtacgtcagacatccaggaccatgcccatcagcacatacag
catcatcagcacccgcatgccccctacggttacccctcacatgacctctggcccagcaac
ggtgggggtcccggctcgttccagaacattccatgtaatggagccggtacactcagtcag
caccgggaccttttggcttccaaggccctacgtcagtcggaggaacaggtgaaggctgag
gtcacagcagcacagcagacgcacccacaccctctcaactcacttcagcatcttggacag
tttccccctctcatgcccaaaaacaagcagcagcaacaacagcaacagcaacagcagcag
caacaacaacaacaacaacagcaacaacaacagcagcagcagcagcaacaacaacaactg
cagctgcaacaacaacaacagcagccaccacctcccccgccgccacccccaccacccccg
ccgcaggctcccacggaggctagccagggggctccaaatttaagcaagccaccgaccatg
tcctatgccagcgccctccgtgctccacccaaaccccgagctgttcgccctgaacaggtc
aaaaagaacagcgaccctctctccctcttacaagagctgagtataggaagctcaaatggt
agcaatgggtactattcctactttaaatga
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integrated database retrieval system
